Gene CNF04330 details

Gene Information

• Locus tag: CNF04330
• ID: 3258162
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006691
• Strand: -
• Start bp: 1254485
• End bp: 1261383
• Gene Length: 6899 bp
• Protein Length: 2152 aa
• GC content: 48%
• IMG OID: 638257551
• Product: pre-mRNA splicing factor, putative
• Protein accession: XP_571389
• Protein GI: 58268466
• COG category: [R] General function prediction only
• COG ID: [COG1204] Superfamily II helicase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.743243
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCATGTCCAA AAAAGGCGGT AGGGATCTTT CCCAGTTCAA CTACGGGGCG ATGAGCTCCC 
TCGTAGTGAA TCAAGGTCAG TTTAGCTCTT TTATCGAAAG TGTCAAACTG ACCTTGAGGA 
CATACAGATC GCTCAGTTGT GAGGAACGAC GAACCTACAG GTGCTCCTGA GTCCCTTGTA 
GGACGTATCG ATCCCAAAAC TATGGGTTCA CGCGTACAGG CAACGGCACC TAAAGACCTT 
GAAAAACGAA AAGCTAAATC CAAACTTACT TCTGCCGATG AGGTCGAGCG CTCCATCCGC 
CGAGCTCAAG AGAAATCTCG CGCACAGTTC GGTACACAAG GCGTTCTAGA TACGGTAGCT 
GAAATGGAGG GGTTGAGATA TAGACCAAGA ACAGCAGAGA CAAGAGAGGT ATATGAGTTG 
TTACTTGGGT TAACTCACAC GATTTTGGGC GACCAAACGC AAGAGGTCGT GAGATCCGCT 
GCGGATACAA TACTGGAATC ACTTAAGTCG GAAGATTTGA AGGAGTTTGA CAAACGAAAA 
GATGTCGAAT CAGTACTTGG GCAGATGGAT GAGTCTATCT GGGCTCAGCT TGTCAGCTTG 
GGTAAGAAAA TTACAGATTA TGTAGAAGAA GAGGAGGGTG GGGCAGATGA AAGGCAACAA 
GCAGTAGATC AAGAAGGCGT CGCGGTTCTT TTCGAGGACG AAGATGAGGA AAGCGAGGAT 
GACTTTGAGA TTGGTGGTAA CCCGTCAGAC GAGGACGAGG AAGAGGATGA AGAGGACGAA 
GAAGAGTCAG GAGCGGAAGC TGCTGAAGAT GAGCAAGATG CGCTTGTCCT TGGTGGCAAA 
TCATCGAAAA GGACTGCTAC TACCGATTCC GACAGGGTTT CTCCCCGTGA CATTGACGGC 
TTTTGGTTGC AACGTCTCAT TGCGTCCTAC TATCCTGATC CTGTCCAATC TTCCGACTTT 
ACCTCCCAAG CACTCACTCT CCTCTCTTCG GATGCCGAAC TTCGAGATCT CGAAAACAGT 
TTGGCTGAGA TGTTCGGTTA CGAAAACTTC GACTTAGTCG CCAAGTTAAC GAAGAACAGG 
GACGTCATAG TTTGGTGTAC GAAGCTTGCG AGGAGTAACG AGGATGAGAA GCAGGATGTC 
GAGGTTGCTA TGCGAGAGAA GGGTGTTGGA TGGATTCTCC GAGAGTTGCG TGGTATTGCC 
AAGAAGCCCG ACCACGTGTC TACTTCTGTT GTTATCCCCA AAACCGCCAC CATTCAGCCT 
GGTACCATTG CCCAGCCTCG CAAGACCATC GACATCGACT CCCTCATTTT CAGCGAAGGT 
GGTCATCTCC TTACGGCCAA GAAGGTCCGT CTTCCTGAAG GGTCTTTTAA GCGTCAGATG 
AAGGGCTACG AGGAAATTCA TGTGCCTGAG CCAAAACGAC GTGAGCCTGT CGTAGGTGAA 
TTGGTGCCGA TTACCAAGAT GCCGGAATGG ACATGGCCTG TATGGGAGAG CGTGAAGACT 
AGGGAATTGA ACGTAATTCA GAGCAAGGTG TTTCCTATTG CTTGGGGAAC AAATGAGCCG 
ATGTTAATTT GTGCTCCTAC GGGTGCGGGA AAAGTGAGCA TCACATTCCA CTGTCTTGTA 
ATAGAAATTA ACTTATTCCG CAGACCAACT GTGCTGCCCT GACCATTCTT CGAGCGATCT 
CTCAATTCCG CGACGAGGCC ACTGGTTTCA TTGACAAGGA CGCCTTCAAG ATTATCTACG 
TCTCTCCCAT GAAGGCTCTT GTTCAAGAAC AAGTTGACGC GTTTTCCAAA CGTTTCTCTT 
CACTCGGTAT TCATGTCGCA GAGTTGACTG GTGATAGCCA GTTGACAAAG CAGCAAATCT 
CTGAAACTCA GATCATTGTA ACGACCCCCG AGAAATGGGA TGTCATCACC CGAAAGAGTA 
CTGACACCAG CTACACCAAC CTCGTGAGGT TGATTATCGT CGATGAGATT CATCTTTTGC 
ACGATGACCG AGGACCTGTT TTGGAAAGTA TTCTTTCGAG AACCATCAGA AAGATGGACC 
AGACACACGA TGATGTCCGT GTCGTTGGCT TGTCTGCGAC ATTGCCAAAT TATAAGGATG 
TTGCAACCTT CCTTCGTGTC GATCCCAAAC AAGGACTCTT CTACTTTGAC GCTTCTTACC 
GTCCCGTCGG TCTCAAGCAA CAGTTTATCG GTGTCACTGA GAAGAAGGCA ATCAAGCGTT 
TGCAAACCAT CAACGAGGTC TGTTACGAAA AGGTTCTCAA CTACGCCGGC CGATCTCAGA 
CTCTTGTATT CGTCCACTCT CGAAAGGAAA CCGCCAAGAC TGCCGCGTTC CTCCGTGATA 
CCGCTATGGA AAAGGAGACG TTGACTCAGT TCATTAACCC TGAGGGTGCC TCGCGTGAGA 
TTCTTATCCA AGAAGCCGCT CAATGCAAGG ATGCCAAGCT CAAGGACCTC TTGCCCTTTG 
GTTTCGGTAT CCACCATGCC GGTATGTCTC GAGAAGACCG TACTACTGTC GAGCAATTGT 
TTTTCGAGGG TCACATCCAG GTTTTGTGCT GTACCGCTAC GCTGGCTTGG GGCGTTAACC 
TTCCTGCCCA TACCGTTATT ATCAAAGGTA CCCAAGTGTA CAACCCCGAA AAGGGTAAAT 
GGTCCGAGCT CTCACCTCAA GACGTCCTTC AGATGCTTGG TCGTGCTGGT CGACCACAAT 
TCGACACTTA TGGTGAAGGT ATCATCATCA CCAACCATGG AGAATTGCAG TACTATACAA 
GTTTAATGAA CCAACAGTTG CCGATTGAGA GTCAGTTTGT GAGCAGGATG GTTGATAACT 
TGAATGCCGA GATTGTGCTT GGAAATGTCA GAAATAGGGA CGAAGGTGTA CAGTGGTTGG 
GCTATACTTA TTTGTAAGTA TCGCTCAAGA GTAGCGGAGA GAGGAAATAC TGACAATTCA 
AAAGATATGT GCGAATGTTG GAGTCTCCCA AGCTGTATAA CGTGGGCGCA GACTACCAGG 
AGGGCGACGA CGCGCTCGTT CAGAAGCGAG GTGAGTAACA TTAGCAAAGT GTATATAATA 
CCTCGCTGAT TCTCTCGTAG CCGATCTAAT CCATTCCGCT GCTGTCCTTC TCGAAAAGGG 
AGGTCTCGTT CGCTATGATC GTGCTACTGG TGTTTTCCAG TCTACTGATC TTGGCCGTAT 
TGCCTCTCAC TACTACATTG CGTACTCTTC AATGTCTGTG TATAACAAGC ACCTTAAACC 
TAACATGACC ATGATCGACC TCTTCCGAGT GTTTGCTTTG AGCAACGAGT TCAGGCTGAT 
TCCTGTCAGG CAAGAAGAGA AGCTCGAATT GGCCAAGTTG CTTGAGAGGG TGCCGATACC 
CGTGAAGGAA GGTGTGGACG AGTCTGTGGC CAAGGTGAAT GTGCTTTTGC AAGCATATAT 
CTCACAGCTT AAGCTCTCCG GATTTGACAT TGTCACGGAC ATGGTTTTCA TCCAACAATC 
TGCTGGCCGT ATCATTCGCG CCATGTTTGA AATCTGCCTC AAAAAGGGCT GGGCTCAACC 
CATGCGAGCT GCTCTTGACC TGTGTAAAAT GGTTGAGAGA AGGATGTGGA AGTCTATGAC 
TCCCCTCAGG CAATTCCCAA GGATCAATCG TGAGATTGTT CAGCGTGCAG AAAGGAAGGA 
CTTCCCTTGG TACAGGTACT TTGATCTTGA CGCCGCTGAA CTAGGAGAGT TGATTGGCTT 
GCCCAAGAGC GGAGCGTACA TTCAGTCTCT TGTTCACAAG TTTCCCCGAC TTGATCTTCA 
AGCTCACGTC CTTCCTCTCA CTCGATCTCT TCTCAAGATC AACGTCACTC TTACTCCTGA 
CTTCCAGTGG GATCGCAATG TACATGGCGC CAGCCAAGCC TTTTGGATCA TTGTAGAGGA 
CGTGGATGGC GAGAATGTCC TTTATCACGA CCAGTTCATC TTAAGAGAAA GGTTCGCGGA 
GGATGAGCAT TACGTGACCA TCACCGTCCC CATCTCTGAG CCTGTGCCTC CCAACTACTA 
TCTGTCTGTC ATTTCTGATA GGTGGTTACA GGCGGAGAGC AAGTTGCCCA TCTCATTCGC 
TCACTTGATC AGGCCCGAAC CATTCCCTCC TCACACTCCT TTGCTGGAAC TCCAACCTTT 
GCCGATTACA GCCCTTCACA ACAAGGCTTT TGAATCTCTT TATCCTTTCG AGCATTTCAA 
TAAGATCCAA ACTCAAGTCT TCCAAGCTCT TTTCACTACT GACGACAATG TCTTTGTCGG 
TGCGCCTACA GGAAGCGGAA AAACTATTTG TGCGGAGTTT GCGTTATTGA GGCTTTGGAG 
CAAGAAGGGC AAGGATGTGC CAAGGGCGGT GTGCATTGAG CCTTACCAGG AGATGGTGGA 
TACTCGGGTG GCGGAGTGGT CCAGCAAGTT TGAGGGATTG GAGAAGGTGA TCGTCGCCCT 
CACCGGAGAA TCAACAGCCG ATCTGGCGCT ATTGCGAAAA GCGGATGTTG TCGTCTGTAC 
TCCTTCGCAA TGGGATTTGC TTTCTCGACG ATGGAAGACA AGGAAGGATG TACAGAACAT 
CGGGCTGCTG ATCGCCGATG AGCTTCAACT GATCGGCGGT GATGTGGGTT CCACCTACGA 
AGTGATTGTT TCCAGAACGA GATATGTATC TCAGCAGACG GGAATCACCA CCAGAATCGT 
AGCCTGCAGT GTGAGCTTAA GCAATGCTAG GGATTTGGGT GATTGGATCG GAGCTGGTAG 
CCAAACCGTG TTCAACTTTT CTCCCGCCGC TCGACCTCTC CCTCTCGAGG TGCATTTGCA 
GTCTTTCAAC GTGCCTCATT TCCCCTCTCT CATGCTTGCA ATGGCCAAAC CCGCCTATCT 
TTCTATGGTG GAACACTCTG CTGGCCGACC TACCATCTGC TTCGTCGCCT CGCGCAAGCA 
ATGTAAGCTC ACTGCCAACG ACATCCTTAC GTACTGCCTT GCGGATGACG ATGAGACTCG 
ATTCCTCAAT GTTGAGAGAG AAGATTTGGA GCCGCATTTG GAGAGGTTGA GCGACGAGGA 
TTTGAAGGAG ACATTGAGGT ACGGTATTGG ATATTATCAC GAGGCTCTGA GCAAGTTGGA 
CAAAAAGATT GTCACTACAT TGTTCGAGGA GGGAGCTATC AAGGTGCTTG TGGCATCTAA 
GGTAAGTTCG AATTGATTCT TTTCGACTGA GCATGAACTA AACTAATAAT TTGCTAGGGC 
ACCGCTTGGA GTCTTCCTGC GACTGCTTAT ATGGTCATCA TCATGGGTGT CCAATACTTC 
GATGGCCAGG AGCACCGATA CGTGGATTAT GCCATCGCCG ATATCCTCCA AATGATGGGC 
CGAGCCTGTC GCCCAATGAT TGACACCTCT TCTCGCTGCG TGTTGATGTG TCAGCAGACC 
CGAAAGGACT TCTTCAAGAA GTTTTTGAAT GAGGCATTGC CTGTCGAATC AAGTTTGCCC 
AGCTACTTGC ATGATCATTT CAACGCCGAG ATTGTAGCCA GGACGATCGA GAATAAGCAG 
GATGCTGTTG ATTGGTGTAC TTGGACCTGG TTCTACAGGA GGTTAATGCA GAACCCCGGG 
GTGAGTATTA ATCCTGAGTC ACTAAAAGAA CGATAGCTGA TAACAAAATC AGTTTTACAA 
CCTACAGGGC ACCACGCCTA CTCACATTGG CGAATACCTC TCTGAACTTG TCGAAACCAC 
CTTGAATGAC TTGGTCAACT CGGACTGCAT CATCATCCAA GATGATATGG ACACGCTTCC 
CAACAATTTG GGTATGATTG CATCCTTTTA CTACATCTCA TACATCACCG TCGAAATTTT 
CTCTCAATCC ATCAAGGAAA CTACCAAACT CAAGGGCTTG CTTGAAATTG TCTCTTCAGC 
GCATGAGTTT GAGACCGTTC CGATCAGGCA CCATGAAGAC ACTCTTCTTG AGAGGATTTA 
CGACCGTGTG CCCGTCAAGG TTGCTAAAGT GGATTACAAC TCACCCTACT TCAAGACTTT 
CCTTCTGCTT CAAGCTCATT TCAGCCGCAC GACCCTTCCT CCCGACTTGG CTATCGATCA 
GTCTACCATT CTTGGCAAGG TAACCGGTCT TCTTTCAGCC GCTGTAGATG TTATGTCCAG 
CAAGAGTTTG CTTGGATGTT TGGGTGCGAT GGATCTTAGT CAGATGTGTG TGCAGGCAAT 
ATGGGATAGG GATTCGCCTT TGAAGCAGGT GCCCTACTTT GACGCCGACG TCCTTGGGAG 
GTTCAAGGCC AAGGGTTTGG ACTCCGTGTA TGACATTATG GAGTTGGAAG ATGATGAAAG 
GAATGATTTG TTGAGGATGA GTGACAGGCA GCTGTACGTT TTCTTCTTTT TCCAAAATCT 
AGAAATAAGT CACTAATGGA ATTACAGTGC GCGGGTTGCC AAGTTCGTCA ACTCTTATCC 
TAATATTGAG GTTTCTTACG ACGTCGAAGA CGCCTCTTCT CTTACCTCTT CCGACCCTGT 
CGTGCTCAAT ATTACTCTCG ATCGCGAAGC TGACGAAGGC AATCCTGAAG ACCAAGTGGC 
CGATGCACCA CACTTCCCTC ATAAGAAGAT GGTCTCATGG TGGCTCGTGG TGGGTGACGA 
AAAGACCAAG TCGTTGTACG CCATCAAGAA GGTCACTGTT AAGGCGACAC TCAAGACTAA 
GCTCGAATTC ACGCTCCCCG AGGGAGAGTG GAATTTGAAG CTGTTCTTGA TCTGTGATAG 
CTATGCTGGA GCGGACCAGG ACTTTGATAT CGAGACTCTT AAGGTAGTGG AAGGAGAGAG 
CTCTGACGAG GAGTCATCAG AGGAGGAGAT GGAGGTGGAT AATTAGAGAT GTGTTTTTTA 
TTTGAAATCT GAAGTGAAAA GTGTAATTGA TATCCATTTT CCATGCATGC GTTTCTGAA 

 

Protein sequence

MSKKGGRDLS QFNYGAMSSL VVNQDRSVVR NDEPTGAPES LVGRIDPKTM GSRVQATAPK 
DLEKRKAKSK LTSADEVERS IRRAQEKSRA QFGTQGVLDT VAEMEGLRYR PRTAETREVY 
ELLLGLTHTI LGDQTQEVVR SAADTILESL KSEDLKEFDK RKDVESVLGQ MDESIWAQLV 
SLGKKITDYV EEEEGGADER QQAVDQEGVA VLFEDEDEES EDDFEIGGNP SDEDEEEDEE 
DEEESGAEAA EDEQDALVLG GKSSKRTATT DSDRVSPRDI DGFWLQRLIA SYYPDPVQSS 
DFTSQALTLL SSDAELRDLE NSLAEMFGYE NFDLVAKLTK NRDVIVWCTK LARSNEDEKQ 
DVEVAMREKG VGWILRELRG IAKKPDHVST SVVIPKTATI QPGTIAQPRK TIDIDSLIFS 
EGGHLLTAKK VRLPEGSFKR QMKGYEEIHV PEPKRREPVV GELVPITKMP EWTWPVWESV 
KTRELNVIQS KVFPIAWGTN EPMLICAPTG AGKTNCAALT ILRAISQFRD EATGFIDKDA 
FKIIYVSPMK ALVQEQVDAF SKRFSSLGIH VAELTGDSQL TKQQISETQI IVTTPEKWDV 
ITRKSTDTSY TNLVRLIIVD EIHLLHDDRG PVLESILSRT IRKMDQTHDD VRVVGLSATL 
PNYKDVATFL RVDPKQGLFY FDASYRPVGL KQQFIGVTEK KAIKRLQTIN EVCYEKVLNY 
AGRSQTLVFV HSRKETAKTA AFLRDTAMEK ETLTQFINPE GASREILIQE AAQCKDAKLK 
DLLPFGFGIH HAGMSREDRT TVEQLFFEGH IQVLCCTATL AWGVNLPAHT VIIKGTQVYN 
PEKGKWSELS PQDVLQMLGR AGRPQFDTYG EGIIITNHGE LQYYTSLMNQ QLPIESQFVS 
RMVDNLNAEI VLGNVRNRDE GVQWLGYTYL YVRMLESPKL YNVGADYQEG DDALVQKRAD 
LIHSAAVLLE KGGLVRYDRA TGVFQSTDLG RIASHYYIAY SSMSVYNKHL KPNMTMIDLF 
RVFALSNEFR LIPVRQEEKL ELAKLLERVP IPVKEGVDES VAKVNVLLQA YISQLKLSGF 
DIVTDMVFIQ QSAGRIIRAM FEICLKKGWA QPMRAALDLC KMVERRMWKS MTPLRQFPRI 
NREIVQRAER KDFPWYRYFD LDAAELGELI GLPKSGAYIQ SLVHKFPRLD LQAHVLPLTR 
SLLKINVTLT PDFQWDRNVH GASQAFWIIV EDVDGENVLY HDQFILRERF AEDEHYVTIT 
VPISEPVPPN YYLSVISDRW LQAESKLPIS FAHLIRPEPF PPHTPLLELQ PLPITALHNK 
AFESLYPFEH FNKIQTQVFQ ALFTTDDNVF VGAPTGSGKT ICAEFALLRL WSKKGKDVPR 
AVCIEPYQEM VDTRVAEWSS KFEGLEKVIV ALTGESTADL ALLRKADVVV CTPSQWDLLS 
RRWKTRKDVQ NIGLLIADEL QLIGGDVGST YEVIVSRTRY VSQQTGITTR IVACSVSLSN 
ARDLGDWIGA GSQTVFNFSP AARPLPLEVH LQSFNVPHFP SLMLAMAKPA YLSMVEHSAG 
RPTICFVASR KQCKLTANDI LTYCLADDDE TRFLNVERED LEPHLERLSD EDLKETLRYG 
IGYYHEALSK LDKKIVTTLF EEGAIKVLVA SKGTAWSLPA TAYMVIIMGV QYFDGQEHRY 
VDYAIADILQ MMGRACRPMI DTSSRCVLMC QQTRKDFFKK FLNEALPVES SLPSYLHDHF 
NAEIVARTIE NKQDAVDWCT WTWFYRRLMQ NPGFYNLQGT TPTHIGEYLS ELVETTLNDL 
VNSDCIIIQD DMDTLPNNLG MIASFYYISY ITVEIFSQSI KETTKLKGLL EIVSSAHEFE 
TVPIRHHEDT LLERIYDRVP VKVAKVDYNS PYFKTFLLLQ AHFSRTTLPP DLAIDQSTIL 
GKVTGLLSAA VDVMSSKSLL GCLGAMDLSQ MCVQAIWDRD SPLKQVPYFD ADVLGRFKAK 
GLDSVYDIME LEDDERNDLL RMSDRQLARV AKFVNSYPNI EVSYDVEDAS SLTSSDPVVL 
NITLDREADE GNPEDQVADA PHFPHKKMVS WWLVVGDEKT KSLYAIKKVT VKATLKTKLE 
FTLPEGEWNL KLFLICDSYA GADQDFDIET LKVVEGESSD EESSEEEMEV DN