Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNF04080 |
Symbol | |
ID | 3258149 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006691 |
Strand | + |
Start bp | 1179325 |
End bp | 1183522 |
Gene Length | 4198 bp |
Protein Length | 1193 aa |
Translation table | |
GC content | 50% |
IMG OID | 638257526 |
Product | DNA-directed RNA polymerase i polypeptide 2, putative |
Protein accession | XP_571380 |
Protein GI | 58268448 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0866247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | CCGCCCCCCG CCATGGTCGC TGCTTTCGAC CCCCTCGCCC CCTCGCAGGC ATCCTCGTCC ACCAGCCCGG ACAACACCAC GTTCCATACT CTCACCAGAG AGAGGCAGTT CAGACATCCG CCCGTCAACG CCTCAGATGT TCCTGCCCTC GACGAGCTCG TCGCTCCCCA CATCAAGAGT TTCAACGCAT TGATAGAAGA TGAAGGGAAC CCAGGTGCAA AGGGTCTGCT GCAGATGGGC GTGGAGGACA TCGGAGAGAA GGTTGTTTTC GATGGCAAGG GAAGCGAAGG CGGTTTGGGC ACAAAATTGA GCTGTATGTC GGGCGTCTGC ATTGCCCAAG GCCTTGCTAA TGCCCATCTG ATCAGACCGA ATCGACCGGG TCGCCCTTAG TAAGCCCCTT GTTCCCGAAA AGGACAAGCT TGCCGTTGAG CGAAGGGTCT TCCCTACCGA GGCACGTATT CCATGGCACT TCCTTTAGTT TACCGCTGAC GCTCCTTACA GGCCCGGGAG CGTCTTGCTA CCTACCGTTC AAAATTGACA GTCAACATCA AGTGGACAGT CACTGACGAG GACGGAAACA GGAAGGAGTT TGAGGAGATC AAGGAGTGCG GTTTGTTGCC TGTTATGGTT CGAGTAAGTA TTGGCTTGTA CAAGTATGCC TCGAATTGCT CTTAACAACC TCGGCAGTCA ATAAGATGTA ACCTTCAAGG CCTTCCTGCC ACCGAACTCA TCAAACACAG CGAAGAGTCT ACCTCTTTCG GTGGTTACTT TATCGTCAAC GGTAATGAGA AGATTATCCG ATATCTCGTT GTTCCCCGGC GACACAACCC TATCAATCTC TACCGACCTT CATTCGCCAA GCGTGGTGCT TCCTACACTC CCTACGGCTG TCAGATTCGA TGTGTCCGAC CAGACGAAAC CGCTTGTACC AACACTATTC ATTACTTGTC CAACGGTGGT GCTACCCTGC GTTTTGCGTG GCGTAAGGTC GAGTACATGA TTCCTCTTAT GCTCATCCTC AAGGCTCTCG TCGATGCGAG TGACAAGGAG ATCTTTGAGG GTCTTATCCA GGGCGAGTAC GACAATACCT TCTTGACCGA CCGTGTGGAG TTGTTGTTGC GAGGCCAAAA GTCGTGGGGT TTACACACTG GTGCTCAATG TTTGGACTAC TTGGGAGAAA AGTTTAGGGT TGTGCTCAAT GTTCCCGATG ACTGGAGTAA CGTCCAGGTT GGTGGCTACC TTTTGCGAAA GGTTGTGCTG GTGCACTTGC CTGCTCCTAG GGACAAGTTC AGGATGCTCC TTTTCATGCT TAGAAAGCTT TACTCTCAGG TTTCTGGTGC CACTTGCCCC GACAACCCTG ATTCTCCTCA GCACCACGAA GTTCTCCTTC CTGGTTTCCT CTACGGTATG ATTATCAAGG AGCGATTTGA TGACTGCCTC AACGCCGTCA AGTCACAAAT CCAACTCGAC CTGAGAGACG GTAAGGCGAG AAGTTTCATG GATCCCAAGT ACTTTACCAG CGTACTGTCA AAAACGAATT GGGATATCGG TTCCAAGCTG TCATACTTCC TCGCTACCGG TAACCTTGTC TCACCCACCG GTCTTGACTT GCAACAAACA TCTGGTTTCA CCATTGTCGC CGAAAAACTC AACTTTTACC GATACCTCAG TCACTTTAGG TGTATACACC GAGGTGCTTT CTTTGCTGAA TTGAAGACGA CCACTGTGCG AAAGTTGATG CCCGAATCGT GGGGTGAGTC GTTCTCGTCA AGATTCTTGT AGAATGTTTT CAACTGATTG TCAATAGGTT TCCTGTGTCC TGTACACACC CCCGACGGTT CTCCATGTGG TCTTTTGAAC CACTTGTCGC ACACCTGTCA AATCGTCACT TCATCCCTTG ACGTTTCACA CATCCCCGCT CTCCTTTCGG CCCAAGGCAT GACCCAAGTG TTCGCCTCTT CTATCGACGG TCGTCGCATG GTTTGCATCC AGCTTGATGG TAAAGTTATC GGTTACGCTT CCCCAATGAA GGCCAAACAG CTCGCCAATA GGCTTCGAAA GCTCAAAACT GAGGCAGACT CCAAGGTGCC TCTTGATCTC GAAATCGGTT ACGTTCCCGT TACGAAGGGT GGACAGTACC CCGGCCTTTA TCTCTTCGCC AGCAGGAGTC GAATGATGCG CCCTGTGACG TACCTTGAGA ATGGCAAGCT TGACCACTTG GGCTCGTTTG AGCAGGTGTA CATGGATGTG GCGATTACCA AGGAAGAGAT CGAAAAGGGT GTCTCCTCTC ACGTGGAGCT GGATCCTACC AGCATGTTGT CAGTTATTGC CAACATGACT CCCTTCTCTG ACTTTAACCA GAGTCCCCGA AACATGTACC AAGTAGGTCA CCAACGGTGT CATTCTTGAC AGAAAACAAT GCTAATACAT AAATAGTGCC AAATGGGTAA ACAGTCGATG GGTACTCCTT CAACAGCTAT CAGCAAGCGT ACCGACAACA AGATGTACCG ACTCCAGTCT GGTCAGACAC CTGTTGTTCG TCCCGATCTT CACAACCAAT ACGGTTTCGA TAACTTCCCC AACGGTACCA ACGCCATAGT TGCTGTCATT TCTTACACTG GTTATGATAT GGAAGACGCG ATGATCTTGA ACAAGTCTGC CCACGAGCGA GGTTTCGGTT ACGGTACAGT CTACAAGGCC GATATCTTTG ACCTAAAGGG TGTGCCCGGA GCGAGTCGAA GCGCCAAGCC TACTTTGCAC TTTGGTCTCG GTAGGGATGT CAAGGAGGAC CACGACGCGA GGAACATTAT CAGTCAGGAC GGTTTGCCCA TCATTGGTAC CAGGGTCAAG GCTGGTGATC CTCTGTGTGC CTACATTGAC GACACCACCG GTCGAACCAA GTTCCACAAG TACAAGGGTG ACGAAACCGC CTTCATCGAC GAAGTTCGTG TCCTCGGTTC CGATGCTGGT GATGCCGAGC TCCAGAAGAT CCACATCAAA CTCCGTATCC CCCGTTCTCC CGTCATCGGT GACAAGTTCT CTTCCCGACA CGGTCAAAAA GGTGTATGTT CCCAAAAGTT CCCTGCGATC GATATGCCTT TTAGCGAGAG CGGTATGCAG CCGGATGTTA TTATCAACCC TCACGCTTTC CCCTCGCGAA TGACTATCGG GATGTTTGTC GAGAGTATGG CTGGTAAGGC GGGAGCTTTG CACGGTCTTG CCCAGGACGC TACTCCTTTC AAGTAAGTCC CCAGTCCTTT TTCTCTTTCA TATTGCAAAA GGGCTGACGG AATATCAGGT TCTCTGACAA GGACCGACCT GTTGACTACT TTGGCGAGCA GCTCCGAGCT GCTGGTTACA ATTACTACGG TAACGAGCCC ATGTACTCTG GTATCACTGG TGAAGAATTC CATGCGGACA TCTACCTTGG TCTTGTCTAC TACCAGCGTT TGAGGCACAT GGTGAACGAC AAGTTCCAGG TCAGAACGAC TGGTCCAGTT GATCCTCTGA CCAGACAACC TGTCAAGGCA AGTTCTCGTC GTCCCGCATA CTTTTTGATA TAGTCAGTTA CTGACTGAAG AACTTTTTTG CAGGGCCGAA AACGTGCTGG TGGTATCCGA TTCGGTGAAA TGGAACGAGA TGCTCTTATC GCGCACGGTA CTTCCTTCTT GTTGCAAGAC CGACTCATGA ACTGTTCCGA CTACTCTACC GCTTGGGTCT GCAGGAACTG TGGTTCACTC GTATCGCTCG GTTTCGAAGA AGTCGGTGGC GCTCAGGGTA TGCAGGAATA CTGTAGGATC TGTGATGGGC ATAAGCATGA GCATGCGGAG GAGATGAGCA AAGAGAACGG TGTTGGTGTT GTCATGCGCG GTGGAGAGAA GAAGGGAAGG ATGGATGTTG TCCCTGTTCC TTGTAAGTGA CAATCTAAAT CTAATGGCGC AAGAAGCGGT CGCTTACCGT CTTCTTTTCT TGTTCTTGCT GATGTCAGAC GTCTTCCGAT ACGTGAGTAT CTCTATATAT TTGATCATCA TTATTCTTGC AATGGCTGAT TTTCATCTCA TAGCTCTGTG CCGAGATGGC TTGTATGGGC ATCAAGTTGA ATGTGACTGT GACATAAGCA GATGCTTGTT AAGATGTGAA GATATTAATT TGAAGGGCTC TTTTTGGATA ACCCTATGCA TTATACCTTG GTTTTCGA
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Protein sequence | MVAAFDPLAP SQASSSTSPD NTTFHTLTRE RQFRHPPVNA SDVPALDELV APHIKSFNAL IEDEGNPGAK GLLQMGVEDI GEKVVFDGKG SEGGLGTKLS YRIDRVALSK PLVPEKDKLA VERRVFPTEA RERLATYRSK LTVNIKWTVT DEDGNRKEFE EIKECGLLPV MVRSIRCNLQ GLPATELIKH SEESTSFGGY FIVNGNEKII RYLVVPRRHN PINLYRPSFA KRGASYTPYG CQIRCVRPDE TACTNTIHYL SNGGATLRFA WRKVEYMIPL MLILKALVDA SDKEIFEGLI QGEYDNTFLT DRVELLLRGQ KSWGLHTGAQ CLDYLGEKFR VVLNVPDDWS NVQVGGYLLR KVVLVHLPAP RDKFRMLLFM LRKLYSQVSG ATCPDNPDSP QHHEVLLPGF LYGMIIKERF DDCLNAVKSQ IQLDLRDGKA RSFMDPKYFT SVLSKTNWDI GSKLSYFLAT GNLVSPTGLD LQQTSGFTIV AEKLNFYRYL SHFRCIHRGA FFAELKTTTV RKLMPESWGF LCPVHTPDGS PCGLLNHLSH TCQIVTSSLD VSHIPALLSA QGMTQVFASS IDGRRMVCIQ LDGKVIGYAS PMKAKQLANR LRKLKTEADS KVPLDLEIGY VPVTKGGQYP GLYLFASRSR MMRPVTYLEN GKLDHLGSFE QVYMDVAITK EEIEKGVSSH VELDPTSMLS VIANMTPFSD FNQSPRNMYQ CQMGKQSMGT PSTAISKRTD NKMYRLQSGQ TPVVRPDLHN QYGFDNFPNG TNAIVAVISY TGYDMEDAMI LNKSAHERGF GYGTVYKADI FDLKGVPGAS RSAKPTLHFG LGRDVKEDHD ARNIISQDGL PIIGTRVKAG DPLCAYIDDT TGRTKFHKYK GDETAFIDEV RVLGSDAGDA ELQKIHIKLR IPRSPVIGDK FSSRHGQKGV CSQKFPAIDM PFSESGMQPD VIINPHAFPS RMTIGMFVES MAGKAGALHG LAQDATPFKF SDKDRPVDYF GEQLRAAGYN YYGNEPMYSG ITGEEFHADI YLGLVYYQRL RHMVNDKFQV RTTGPVDPLT RQPVKGRKRA GGIRFGEMER DALIAHGTSF LLQDRLMNCS DYSTAWVCRN CGSLVSLGFE EVGGAQGMQE YCRICDGHKH EHAEEMSKEN GVGVVMRGGE KKGRMDVVPV PYVFRYLCAE MACMGIKLNV TVT
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