Gene CNF04080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCNF04080 
Symbol 
ID3258149 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameCryptococcus neoformans var. neoformans JEC21 
KingdomEukaryota 
Replicon accessionNC_006691 
Strand
Start bp1179325 
End bp1183522 
Gene Length4198 bp 
Protein Length1193 aa 
Translation table 
GC content50% 
IMG OID638257526 
ProductDNA-directed RNA polymerase i polypeptide 2, putative 
Protein accessionXP_571380 
Protein GI58268448 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0866247 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CCGCCCCCCG CCATGGTCGC TGCTTTCGAC CCCCTCGCCC CCTCGCAGGC ATCCTCGTCC 
ACCAGCCCGG ACAACACCAC GTTCCATACT CTCACCAGAG AGAGGCAGTT CAGACATCCG
CCCGTCAACG CCTCAGATGT TCCTGCCCTC GACGAGCTCG TCGCTCCCCA CATCAAGAGT
TTCAACGCAT TGATAGAAGA TGAAGGGAAC CCAGGTGCAA AGGGTCTGCT GCAGATGGGC
GTGGAGGACA TCGGAGAGAA GGTTGTTTTC GATGGCAAGG GAAGCGAAGG CGGTTTGGGC
ACAAAATTGA GCTGTATGTC GGGCGTCTGC ATTGCCCAAG GCCTTGCTAA TGCCCATCTG
ATCAGACCGA ATCGACCGGG TCGCCCTTAG TAAGCCCCTT GTTCCCGAAA AGGACAAGCT
TGCCGTTGAG CGAAGGGTCT TCCCTACCGA GGCACGTATT CCATGGCACT TCCTTTAGTT
TACCGCTGAC GCTCCTTACA GGCCCGGGAG CGTCTTGCTA CCTACCGTTC AAAATTGACA
GTCAACATCA AGTGGACAGT CACTGACGAG GACGGAAACA GGAAGGAGTT TGAGGAGATC
AAGGAGTGCG GTTTGTTGCC TGTTATGGTT CGAGTAAGTA TTGGCTTGTA CAAGTATGCC
TCGAATTGCT CTTAACAACC TCGGCAGTCA ATAAGATGTA ACCTTCAAGG CCTTCCTGCC
ACCGAACTCA TCAAACACAG CGAAGAGTCT ACCTCTTTCG GTGGTTACTT TATCGTCAAC
GGTAATGAGA AGATTATCCG ATATCTCGTT GTTCCCCGGC GACACAACCC TATCAATCTC
TACCGACCTT CATTCGCCAA GCGTGGTGCT TCCTACACTC CCTACGGCTG TCAGATTCGA
TGTGTCCGAC CAGACGAAAC CGCTTGTACC AACACTATTC ATTACTTGTC CAACGGTGGT
GCTACCCTGC GTTTTGCGTG GCGTAAGGTC GAGTACATGA TTCCTCTTAT GCTCATCCTC
AAGGCTCTCG TCGATGCGAG TGACAAGGAG ATCTTTGAGG GTCTTATCCA GGGCGAGTAC
GACAATACCT TCTTGACCGA CCGTGTGGAG TTGTTGTTGC GAGGCCAAAA GTCGTGGGGT
TTACACACTG GTGCTCAATG TTTGGACTAC TTGGGAGAAA AGTTTAGGGT TGTGCTCAAT
GTTCCCGATG ACTGGAGTAA CGTCCAGGTT GGTGGCTACC TTTTGCGAAA GGTTGTGCTG
GTGCACTTGC CTGCTCCTAG GGACAAGTTC AGGATGCTCC TTTTCATGCT TAGAAAGCTT
TACTCTCAGG TTTCTGGTGC CACTTGCCCC GACAACCCTG ATTCTCCTCA GCACCACGAA
GTTCTCCTTC CTGGTTTCCT CTACGGTATG ATTATCAAGG AGCGATTTGA TGACTGCCTC
AACGCCGTCA AGTCACAAAT CCAACTCGAC CTGAGAGACG GTAAGGCGAG AAGTTTCATG
GATCCCAAGT ACTTTACCAG CGTACTGTCA AAAACGAATT GGGATATCGG TTCCAAGCTG
TCATACTTCC TCGCTACCGG TAACCTTGTC TCACCCACCG GTCTTGACTT GCAACAAACA
TCTGGTTTCA CCATTGTCGC CGAAAAACTC AACTTTTACC GATACCTCAG TCACTTTAGG
TGTATACACC GAGGTGCTTT CTTTGCTGAA TTGAAGACGA CCACTGTGCG AAAGTTGATG
CCCGAATCGT GGGGTGAGTC GTTCTCGTCA AGATTCTTGT AGAATGTTTT CAACTGATTG
TCAATAGGTT TCCTGTGTCC TGTACACACC CCCGACGGTT CTCCATGTGG TCTTTTGAAC
CACTTGTCGC ACACCTGTCA AATCGTCACT TCATCCCTTG ACGTTTCACA CATCCCCGCT
CTCCTTTCGG CCCAAGGCAT GACCCAAGTG TTCGCCTCTT CTATCGACGG TCGTCGCATG
GTTTGCATCC AGCTTGATGG TAAAGTTATC GGTTACGCTT CCCCAATGAA GGCCAAACAG
CTCGCCAATA GGCTTCGAAA GCTCAAAACT GAGGCAGACT CCAAGGTGCC TCTTGATCTC
GAAATCGGTT ACGTTCCCGT TACGAAGGGT GGACAGTACC CCGGCCTTTA TCTCTTCGCC
AGCAGGAGTC GAATGATGCG CCCTGTGACG TACCTTGAGA ATGGCAAGCT TGACCACTTG
GGCTCGTTTG AGCAGGTGTA CATGGATGTG GCGATTACCA AGGAAGAGAT CGAAAAGGGT
GTCTCCTCTC ACGTGGAGCT GGATCCTACC AGCATGTTGT CAGTTATTGC CAACATGACT
CCCTTCTCTG ACTTTAACCA GAGTCCCCGA AACATGTACC AAGTAGGTCA CCAACGGTGT
CATTCTTGAC AGAAAACAAT GCTAATACAT AAATAGTGCC AAATGGGTAA ACAGTCGATG
GGTACTCCTT CAACAGCTAT CAGCAAGCGT ACCGACAACA AGATGTACCG ACTCCAGTCT
GGTCAGACAC CTGTTGTTCG TCCCGATCTT CACAACCAAT ACGGTTTCGA TAACTTCCCC
AACGGTACCA ACGCCATAGT TGCTGTCATT TCTTACACTG GTTATGATAT GGAAGACGCG
ATGATCTTGA ACAAGTCTGC CCACGAGCGA GGTTTCGGTT ACGGTACAGT CTACAAGGCC
GATATCTTTG ACCTAAAGGG TGTGCCCGGA GCGAGTCGAA GCGCCAAGCC TACTTTGCAC
TTTGGTCTCG GTAGGGATGT CAAGGAGGAC CACGACGCGA GGAACATTAT CAGTCAGGAC
GGTTTGCCCA TCATTGGTAC CAGGGTCAAG GCTGGTGATC CTCTGTGTGC CTACATTGAC
GACACCACCG GTCGAACCAA GTTCCACAAG TACAAGGGTG ACGAAACCGC CTTCATCGAC
GAAGTTCGTG TCCTCGGTTC CGATGCTGGT GATGCCGAGC TCCAGAAGAT CCACATCAAA
CTCCGTATCC CCCGTTCTCC CGTCATCGGT GACAAGTTCT CTTCCCGACA CGGTCAAAAA
GGTGTATGTT CCCAAAAGTT CCCTGCGATC GATATGCCTT TTAGCGAGAG CGGTATGCAG
CCGGATGTTA TTATCAACCC TCACGCTTTC CCCTCGCGAA TGACTATCGG GATGTTTGTC
GAGAGTATGG CTGGTAAGGC GGGAGCTTTG CACGGTCTTG CCCAGGACGC TACTCCTTTC
AAGTAAGTCC CCAGTCCTTT TTCTCTTTCA TATTGCAAAA GGGCTGACGG AATATCAGGT
TCTCTGACAA GGACCGACCT GTTGACTACT TTGGCGAGCA GCTCCGAGCT GCTGGTTACA
ATTACTACGG TAACGAGCCC ATGTACTCTG GTATCACTGG TGAAGAATTC CATGCGGACA
TCTACCTTGG TCTTGTCTAC TACCAGCGTT TGAGGCACAT GGTGAACGAC AAGTTCCAGG
TCAGAACGAC TGGTCCAGTT GATCCTCTGA CCAGACAACC TGTCAAGGCA AGTTCTCGTC
GTCCCGCATA CTTTTTGATA TAGTCAGTTA CTGACTGAAG AACTTTTTTG CAGGGCCGAA
AACGTGCTGG TGGTATCCGA TTCGGTGAAA TGGAACGAGA TGCTCTTATC GCGCACGGTA
CTTCCTTCTT GTTGCAAGAC CGACTCATGA ACTGTTCCGA CTACTCTACC GCTTGGGTCT
GCAGGAACTG TGGTTCACTC GTATCGCTCG GTTTCGAAGA AGTCGGTGGC GCTCAGGGTA
TGCAGGAATA CTGTAGGATC TGTGATGGGC ATAAGCATGA GCATGCGGAG GAGATGAGCA
AAGAGAACGG TGTTGGTGTT GTCATGCGCG GTGGAGAGAA GAAGGGAAGG ATGGATGTTG
TCCCTGTTCC TTGTAAGTGA CAATCTAAAT CTAATGGCGC AAGAAGCGGT CGCTTACCGT
CTTCTTTTCT TGTTCTTGCT GATGTCAGAC GTCTTCCGAT ACGTGAGTAT CTCTATATAT
TTGATCATCA TTATTCTTGC AATGGCTGAT TTTCATCTCA TAGCTCTGTG CCGAGATGGC
TTGTATGGGC ATCAAGTTGA ATGTGACTGT GACATAAGCA GATGCTTGTT AAGATGTGAA
GATATTAATT TGAAGGGCTC TTTTTGGATA ACCCTATGCA TTATACCTTG GTTTTCGA
 
Protein sequence
MVAAFDPLAP SQASSSTSPD NTTFHTLTRE RQFRHPPVNA SDVPALDELV APHIKSFNAL 
IEDEGNPGAK GLLQMGVEDI GEKVVFDGKG SEGGLGTKLS YRIDRVALSK PLVPEKDKLA
VERRVFPTEA RERLATYRSK LTVNIKWTVT DEDGNRKEFE EIKECGLLPV MVRSIRCNLQ
GLPATELIKH SEESTSFGGY FIVNGNEKII RYLVVPRRHN PINLYRPSFA KRGASYTPYG
CQIRCVRPDE TACTNTIHYL SNGGATLRFA WRKVEYMIPL MLILKALVDA SDKEIFEGLI
QGEYDNTFLT DRVELLLRGQ KSWGLHTGAQ CLDYLGEKFR VVLNVPDDWS NVQVGGYLLR
KVVLVHLPAP RDKFRMLLFM LRKLYSQVSG ATCPDNPDSP QHHEVLLPGF LYGMIIKERF
DDCLNAVKSQ IQLDLRDGKA RSFMDPKYFT SVLSKTNWDI GSKLSYFLAT GNLVSPTGLD
LQQTSGFTIV AEKLNFYRYL SHFRCIHRGA FFAELKTTTV RKLMPESWGF LCPVHTPDGS
PCGLLNHLSH TCQIVTSSLD VSHIPALLSA QGMTQVFASS IDGRRMVCIQ LDGKVIGYAS
PMKAKQLANR LRKLKTEADS KVPLDLEIGY VPVTKGGQYP GLYLFASRSR MMRPVTYLEN
GKLDHLGSFE QVYMDVAITK EEIEKGVSSH VELDPTSMLS VIANMTPFSD FNQSPRNMYQ
CQMGKQSMGT PSTAISKRTD NKMYRLQSGQ TPVVRPDLHN QYGFDNFPNG TNAIVAVISY
TGYDMEDAMI LNKSAHERGF GYGTVYKADI FDLKGVPGAS RSAKPTLHFG LGRDVKEDHD
ARNIISQDGL PIIGTRVKAG DPLCAYIDDT TGRTKFHKYK GDETAFIDEV RVLGSDAGDA
ELQKIHIKLR IPRSPVIGDK FSSRHGQKGV CSQKFPAIDM PFSESGMQPD VIINPHAFPS
RMTIGMFVES MAGKAGALHG LAQDATPFKF SDKDRPVDYF GEQLRAAGYN YYGNEPMYSG
ITGEEFHADI YLGLVYYQRL RHMVNDKFQV RTTGPVDPLT RQPVKGRKRA GGIRFGEMER
DALIAHGTSF LLQDRLMNCS DYSTAWVCRN CGSLVSLGFE EVGGAQGMQE YCRICDGHKH
EHAEEMSKEN GVGVVMRGGE KKGRMDVVPV PYVFRYLCAE MACMGIKLNV TVT