Gene CNF03680 details

Gene Information

• Locus tag: CNF03680
• ID: 3258018
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006691
• Strand: -
• Start bp: 1074605
• End bp: 1076721
• Gene Length: 2117 bp
• Protein Length: 531 aa
• GC content: 48%
• IMG OID: 638257487
• Product: rtf1 protein, putative
• Protein accession: XP_571655
• Protein GI: 58268998
• COG category: [K] Transcription
• COG ID: [COG5296] Transcription factor involved in TATA site selection and in elongation by RNA polymerase II

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.176479
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTTATTGCA AATCATCATG TCTGACCTCG AGAACGAGCT TTTGGGTCTC GCAGAGGATG 
ATCCTACCCG CCACAGGAAG CGTCACGGCT CAAATGATAG GAGTAAAAGA AATAGCAAGG 
CGTTGTACGT TATCCCCATC TGACTGTTCT TCCCTACAGA CTATAAAAGG TTGACTAGGA 
GTGTTTTTTA GTATTGAAGA TTCGGACGAT GATGGAGAGG AGGAAGATAT GGAGATGGAA 
TCTGAAGATG ATGAACCAGC TCTTCAGAGA TCAAGAGGGC CGTTGAAGAA CCCTTATCCC 
TTGGAGGGTA AATATGTGGA CGAGGCGGAC AGGGAGGCGT GAGTATCCTT TATTTTATTT 
ATTTTGTTGA GTGTGATGGC TAATACAAGG TATAGTCTTG AGAACCTCCC GGAAATCGAG 
AGAGAAAACA TCTTGGCGTC ACGATTGGAA GAAATGCAAA AGTTCAAAGA CTCTCAAGCG 
CTTGATGCGA TGTTCAAGAC TGCTCATGGT GGGGATGATG AGGAAGAAGA TGATTCGAGA 
GCGAGAAAGA GACGTGAGCC GAACCATTCA GAACCATATA GAAGCTATGT GCTGATCGAT 
CCACAGGCAA GCACACTAGT GTGAGCGAGA AGGCTTCTAG GGCACTCAAC GTTTTGAAGA 
ACAAGCGGAA AGCGAAGGAT GAGCGTATGC AGCGCCGGGT AAGACTGCTC TCTATGGCAA 
ATCGTTGGCC GACCTGACAA ACGCAAAGGC TGCACGTCGT CGACATTCCC GATCTGCCTC 
TGCATCTTCC GAAGAAGAAG GCCAGATCAC CCGCAGATCG CCGTCATACT CCCCTGAACG 
ATCGCTTTCC CCTCAACCCA AAAACGTCCA GCCCAAGCTT AGCAAAGAGG AGGAAATGGA 
TGCTATCGCG CCCAACAGGG CCGAATTGGA GAGTGCGAGG GTTAGTAGGT ACGAGTTGGT 
GGATATGATG CACAAGGATG GCTTCGAGGA CGTTATCACT GGTGAGTGCA CAGCCATAGA 
CACCTGGATG GGACTTAAAC AGATGCCGCA GGTGCATACG TGCGAATTAT CTCTCCTGAT 
AGGGACGAGC ATGGTAGGCC AAAGTACAGG CTTTACAAAA TTGCGGATGT GGACGAGTCT 
GGACAGTTCG GATCGTATTC TATCGAATAC CAGGGTCGAC AAATCCGAGA GACTCGGGCT 
TTGCTTGTCA AATACGGTTC AGCATCGAGA CTGTTCAGAA TGGCGGATGT TTCTAATGGT 
GTGATTGAAG AAGTAAGTAT AGGATCTTGT CGATTACTGA CTAGAGTTAA TTTTGTTCAG 
TCTGAGTTTC AGAGGTTTTC TATGACAAAC CAAGCAGATG GTGTAAAAGC CCCTAAGCGG 
TCATTTTTAA AGAAGAAGCA CGATGAAATA AAGGCTCTGA GAGAAAGGCC GATGACAAGC 
GTACGTCTTG TAACACTCAT CCACTTATAG AGCTAAATTT CCATCGCAGG CTGAAATTGA 
TCGCCGAGTT GACTCTCGTA AATCTCAAGA ATCATCATTT ACTCGAGTTA GCCTCCTCAA 
AATACATCAA CTTATGAACA CACGTGACCT CGCCCTCCGC CGAAACGACC ACGTCATGGT 
CGAGAAGCTC AACTCCGACA TTATCGCCCT CGGTGGCGAT CCCAACACCG GCAGGCTTGT 
TGCAGAAAAG GAAGGGGAGA AGGATGACTA CGATATGAAG ATTCAGAAGA TCAATGAAAA 
CAATAAGAGG AAGACAAAGG AGGCAATGAT GAGAGCTCAT GCAGCTGCTG TGGCGAGGAA 
GAAGGCTGAA GAGGCCGTTG TTAAGGCGAA GCTGTACGGT TTATCCTCTC CGACTCCAAC 
GAGCCTATAC TAACCTTGTA ATCTGATCCA ATAGGGCTGC ATCCCAAAAC CCGTCTACAA 
CAAGTACACC AGCAACGGAT GTTCCCAAAC CCGAGGTTCC ACCGCCATCA GGTCAACGCA 
AGGGAGAGAC TCCTCAACAA TACGTGGCGA GGACGGTCCA GCTGGATCTA GATTTGGGAG 
ATTTCTGATG TGTTCTCTCG ACGAGTGGTG GGTGGAGCTG GGTTCTCTGC TATAGTCAAT 
GACGAAGTTG GGATATG 

 

Protein sequence

MSDLENELLG LAEDDPTRHR KRHGSNDRSK RNSKAFIEDS DDDGEEEDME MESEDDEPAL 
QRSRGPLKNP YPLEGKYVDE ADREALENLP EIERENILAS RLEEMQKFKD SQALDAMFKT 
AHGGDDEEED DSRARKRRKH TSVSEKASRA LNVLKNKRKA KDERMQRRAA RRRHSRSASA 
SSEEEGQITR RSPSYSPERS LSPQPKNVQP KLSKEEEMDA IAPNRAELES ARVSRYELVD 
MMHKDGFEDV ITGAYVRIIS PDRDEHGRPK YRLYKIADVD ESGQFGSYSI EYQGRQIRET 
RALLVKYGSA SRLFRMADVS NGVIEESEFQ RFSMTNQADG VKAPKRSFLK KKHDEIKALR 
ERPMTSAEID RRVDSRKSQE SSFTRVSLLK IHQLMNTRDL ALRRNDHVMV EKLNSDIIAL 
GGDPNTGRLV AEKEGEKDDY DMKIQKINEN NKRKTKEAMM RAHAAAVARK KAEEAVVKAK 
LAASQNPSTT STPATDVPKP EVPPPSGQRK GETPQQYVAR TVQLDLDLGD F