Gene CNF03480 details

Gene Information

• Locus tag: CNF03480
• ID: 3258054
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006691
• Strand: -
• Start bp: 1029903
• End bp: 1033445
• Gene Length: 3543 bp
• Protein Length: 998 aa
• GC content: 48%
• IMG OID: 638257466
• Product: general RNA polymerase II transcription factor, putative
• Protein accession: XP_571421
• Protein GI: 58268530
• COG category: [K] Transcription; [L] Replication, recombination and repair; [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG0515] Serine/threonine protein kinase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.537283
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCGAC TACAGCGAAC AAGGTCGCAA CACTTTGTCA GTTCACCTCG TAAGACCGCA 
TCGCCTCTTA TAGCCAGGCA TACTTTATAC CCTCGTCATC CACCAAAGAA ACGCCGTTTA 
GGCGTTACGA CCTTCGTGGC GAGCCATAAT GAAGCTGGGC AAAACTATTC TAATGAGCTG 
GAAGATGATC TAGAAAAAGC CATTATGAAA ACGGGCGAGT CTTCTAGCGC ACCGGCTCGC 
AGAACCAGTC GATCGCGTTC ACAATCGAGA CCTGTCAGAC GAAAAAGTAA CGACAAGGTT 
TGGGCCGACT CACTACCAAA TGGGCAGGAC GGTGAAGATG CCGCTAGCCC AAAAAAACGA 
AAGCGGTCAA GAGCCGGGTC ATTGTCGACG GAGGACAGCT GGGTAGAAAC TAGTGGAGAT 
GAATGGGAGC CAGACTTTAT CGCCGAGAGT GAGTCGTTAT ATCGACATAC AGCGACTCTA 
TTAACAATTG CCTATCAGGT GACCGAAATA TGATCCATTA TGCACCATCA ACGGCATTAC 
ATAGATTACG GAAGGCTGAA TTGGTAAGAT TATGGAGAGT AGCCGGTATG TGGGATAGTG 
AAGACATTCC CGACGACATG AATGAGGATG AAACGATTGG TGATATGGGT AAGAAAGAGC 
TTGTTGATGG TCTTATCTCT GCCGTATGTC CATCATGCCG AGATTTTCTG CCTTCATGAC 
TAACTGGATC ATAGCGAAAG CATCAAACAG GGCGCCTTAT TTCCCCGCTT CCCTCATCCC 
CAAATCGTCT TATTCGCCGA CAGTCTACAC TTTCCCCTAT CCCAGCCACC CCTCCCCCGT 
CCTCTCCACT TGCAGAATCA TCATCCCCAG ATGTGACTCC AAAACCGCGA CCTCGTACAA 
GGTCACGCGT TCGATTAGAA ACGCCCGTCG TTCGTCGGCA GCCACGCCCC TCACGTCCAA 
CTCGCACTTT GACTAAACGC CATACCAAGT CGGAGGCAAG GTCCAGACGA GTAAGAGCCC 
AGCTGACAAA AAAAGTCAAT GGCAAAAGCG AGAACGGTGA CGAGATTGAG CTTACTGAGT 
CATCTGATTC TGATGACGAT GTAAACGGAA TAGAATCCAC GCCCATAGTA AAACGACTAC 
GACCTAGAGG GGTGGGAGAA AGGAAAAGCT TCATGAAAGA GCCCTCAACG GACATCACGG 
ACTTTGAAGA TGATGCCGAA GAGGCTGATG CGGAAGCCAC TGAAGTGGAA GAAGAGCCCC 
AGCCAAAAGA AAGGAAGTTG CGACGCAAAT CCATTTCTCA GGCGAGCCTT TCGAAATACG 
GTGGCGACAT TGATATGGCC CCAACGAGCG AGCAAAGGTC GTCAAAAAAT CTTCCTACAA 
GGGGAGCCAA GAAGAAGGCT ATCCAACGGA TGCAGGGTGG TGAAAGCGGT ACGGAAGATG 
AAGACATGGA AGTCGATGAG GAAAGGGATA TTGGCATGAA AGAAGGGACG CCTACGCCAC 
AACCGGCAAT TCCTCCACGG AGGGGCCGCG CTTCTCGCTC ATCGACCCCT AAACTTGACG 
AGGATTCTGC TATGGTCGGC TCGCCCACCC CATCCGTCGC AACCGAGACG GAAGCATCTA 
CTCCTCGGCC AGTACACACT ACTCGCTCCG GCAAGACTTT CGGTGCAATC CAGAATCGTC 
GTCGCCAACT TCTTCAGGAA GCGAGGAATG ACCCCGACAT GGATGAAGAG GACGAAAGCG 
ACGAGGAAGA TGGAGAGCCT GAACTGGATA TAGATTTGAG CGAAGCTACG GTGGCGAGCT 
TGATAAGGCT ATTGCGAGAT GAGTTAGTGC AGATGTGCGA AACTCGAGGG ATTGAGGTTG 
GAGGCACCAA GCCGCAATTG GCAAAGGCGC TATTAGAATG GGTAAGTAAA TTTTCCATTA 
TGTTCAGGAA TGAAGGACTT ATCAACTTTA TTTAGCGCGA TGAGCAAAAG GGCTCTTATC 
CATCTTCAGC CTCAACCGCT CGACCTTCTC CTCCCCGTAC TGCTATGCCT CGACGCAAGT 
CTAAATCTAA ATCTAAAACC AAATCCAAGT TCAAGTCCAA TAAGCATGTA CCCGCTATCG 
GCACCGCCGC TCACGCACCC GGTAAACCCA CACCAGTTCT TCTTCGCTCA CATATTCATG 
CCAACGATCC TGAAACACCA CCTTTATCCA AAGGTGAGGA AGGTGATGTA GAAGAGGAAA 
AGAAGGGGAC AGAAGCAGAG TTGAACTTGG ATCTGCAAGA GTTGGGATTG GAAGATTCAG 
TTATTAAACC GAGCCAGTTG ATAAAGCTGG AGAAGATAGG TAGTGGTGGC TTCAAAGAGT 
GAGTTGGCAT TTTCAAAATC ATGAGCAAAC AGAGTTGACT GGTTCGGTAG TGTATACGTT 
GGGAAGTTTA GAGGCAGAAA GGTGGCAATC TCTGAGTTTA GAAGCCATTT GAGTGAAAGT 
AGGTGATTTC AGTTTTAGAA GCAAAAAGTA GCTTACAGTC GGTAGTGGAC ATAAGGGAAT 
TGAAGCTGCT TGCCGAATTC AGTCACCCAA ACATCGTTCG CTTTGTAAGT CCCTTTTTAT 
CCAGTGAGCG CATCATTGCT TATATCGAAC AGAGGGGTAT CTGTATTCCC GAAGACTCTA 
CCCACGTGCC ATGTATGCTC GTTAGCGAGC TGTGCGAGAA CGGCGATCTG TTCGACTATA 
TTGTAAGTCT TATTTATTAC CCATCCCGTT GGAACTAATA AGTCACTTAG CGTAACGTCC 
CGTGCCCCAC TCTGAAACGT CTTCTGAGTC TTATGCTCGA CATCGCTCGG GGCCTGGAAT 
ATTTACACAC CCGCAAACCA TCTATCATCC ATCGAGACTG TAAATCTTCC AACATCCTCA 
TCAATCGTTC TGGGGTGGCC AAAGTAGGGG ATTTCGGCTT AGCACGTGTG AAGAACTCGA 
CTAGATCTAT GATTAGAAGT CTGGTGGGAA CAGTGAACTG GCAAGCACCT GAACTTTGGC 
ATCCGACGCC AAGGTATGAC TATAAAGTAG ACGTGTTTTC GGCCGGGATG GTGTATTGGG 
AAATGATGTC AGGATGGATT GGAGAAAAGG TATGTTGTTT CTATTTATCA CTTGCTCAGG 
TAATCACTAA TATATCATCT GTAGAAATAC CCCTGGGAAG GACATAACGA ACATTACATT 
TATGATGCTG TTGGAACGAA GCATCGCCGT CCACCTGTGA CAGGCATGCG CAAGCATTGG 
GGATCTGAGC CAGTGAACCT GATGGAGAGG ATGTGGCACC AAGACCCTGC GGAGAGACCG 
ACCATGACTG ACGTTGTGCA CGATCTTGAG AGCATATTAG CAGAGCTCAA GTGAGGATTC 
GATGGGCAGC TTTTGGAGTA TGCGTTTTGG AGTTTGTGGA TACGACGAAG ATGATGGCTT 
AGTAATCTGA CTTGTAACGA TAGGGCGAGT AGTAGGTGTA TAGTAGTGTC CAATCAACCA 
CAGCTATCTT TCATGAGCAC ACATTCGGCA TGTTTTTTTT GGTGTTGGGA AAAAAAGTGA 
ATG 

 

Protein sequence

MDRLQRTRSQ HFVSSPRKTA SPLIARHTLY PRHPPKKRRL GVTTFVASHN EAGQNYSNEL 
EDDLEKAIMK TGESSSAPAR RTSRSRSQSR PVRRKSNDKV WADSLPNGQD GEDAASPKKR 
KRSRAGSLST EDSWVETSGD EWEPDFIAES DRNMIHYAPS TALHRLRKAE LVRLWRVAGM 
WDSEDIPDDM NEDETIGDMG KKELVDGLIS ARKHQTGRLI SPLPSSPNRL IRRQSTLSPI 
PATPPPSSPL AESSSPDVTP KPRPRTRSRV RLETPVVRRQ PRPSRPTRTL TKRHTKSEAR 
SRRVRAQLTK KVNGKSENGD EIELTESSDS DDDVNGIEST PIVKRLRPRG VGERKSFMKE 
PSTDITDFED DAEEADAEAT EVEEEPQPKE RKLRRKSISQ ASLSKYGGDI DMAPTSEQRS 
SKNLPTRGAK KKAIQRMQGG ESGTEDEDME VDEERDIGMK EGTPTPQPAI PPRRGRASRS 
STPKLDEDSA MVGSPTPSVA TETEASTPRP VHTTRSGKTF GAIQNRRRQL LQEARNDPDM 
DEEDESDEED GEPELDIDLS EATVASLIRL LRDELVQMCE TRGIEVGGTK PQLAKALLEW 
RDEQKGSYPS SASTARPSPP RTAMPRRKSK SKSKTKSKFK SNKHVPAIGT AAHAPGKPTP 
VLLRSHIHAN DPETPPLSKG EEGDVEEEKK GTEAELNLDL QELGLEDSVI KPSQLIKLEK 
IGSGGFKDVY VGKFRGRKVA ISEFRSHLSE MDIRELKLLA EFSHPNIVRF VSPFLSSERI 
IAYIEQRGIC IPEDSTHVPC MLVSELCENG DLFDYIRNVP CPTLKRLLSL MLDIARGLEY 
LHTRKPSIIH RDCKSSNILI NRSGVAKVGD FGLARVKNST RSMIRSLVGT VNWQAPELWH 
PTPRYDYKVD VFSAGMVYWE MMSGWIGEKK YPWEGHNEHY IYDAVGTKHR RPPVTGMRKH 
WGSEPVNLME RMWHQDPAER PTMTDVVHDL ESILAELK