Gene CNF00090 details

Gene Information

• Locus tag: CNF00090
• ID: 3258236
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006691
• Strand: +
• Start bp: 24204
• End bp: 26241
• Gene Length: 2038 bp
• Protein Length: 568 aa
• GC content: 52%
• IMG OID: 638257128
• Product: rRNA modification-related protein, putative
• Protein accession: XP_571279
• Protein GI: 58268246
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.0365741
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

AAAAAAAAAG AATCAACAGC AAGAAAAGAT GCTTGTCCTT ACAGAGACAT CCGTCGGATT 
CGTCGTCTTC AAGCTCAGCA GCGATGCCAA GATCGACAAC AAGGACCTTT GGAAGGAGTT 
TGAGACACCC GAGGGTGCCA ACAAGGCGTA TGTCTTTCGC ACACATCTGG TCCAGCTGCG 
AGCTAACCTA CGACGCAGCT TAAAGGTTCA GGCCATTCAG CGATTTACAT CCACCGCGTC 
TGCCGTTGAA GATCTCACCG CTGTCCAGGA CGGACGATTG ACAGACTCAC TCTCCAGGTT 
TTTGCTTGAC ACTGTCGGCG GTGCCGATGA TGGCGAAAAG AAGAAGAAGA AGAAGAAGAT 
TGAGGAGATG TTGGTTGTTT CCGATCCCAA ATTGGGTTAG TCTTGTCCTT ATTGGTGTAT 
TCAATCCGGA TCTGTGCATT ACTGACGCAA TACGCAGCCG GTACCATCAA CAAGGCTCTT 
TCCATCCCCG TCCTCTCCGA CTCCTCTACC CAGGACCTCT ACCGTGGTAT CCGTCAACAG 
CTCGCCTCTC TTCTCGGTGG CGTTGACCAG AAAGACCTCA ACACCATGTC TCTCGGTCTT 
GGTCATTCTC TCTCCCGATT CAAGCTTAAA TTCTCCACCG ACAAGGTTGA CACTATGGTT 
ATACAGGCTA TCGCTTTGCT CGATGATTTG GATAAGGAGA TTAACATATA CGCCATGAGG 
GTTAAGGAGT GGTACGGATG GCATTTCCCT GAAATGGCCA AGATCATTGT CGACAACATT 
GCTTTCGCTC GTGTCGTCAA GGCCATGGGT GAGTAAGATG TTTATGTGTC TCAGCTTTGC 
TAACCGGACC CATAGGTTTC CGAACCAACG CCGTTACCAC CGACTTCTCT CTCCTCCTTC 
CCGAAGACCT CGAGGCTACC CTCAAATCCG CCGCCGAGCT TTCTATGGGT ACCGAAATCT 
CTGATTCTGA CATGACCCAC ATCCACTCTC TCTGTGACCA AGTCATCTCC ATCTCCGAGT 
ACCGCACCCA GCTCTCCGAA TACCTCCGCA ACCGCATGCA GGCCATCGCT CCCAACCTTA 
CCGCCCTTGT CGGTGAGCTT GTCGGTGCCC GATTGATTAG TCACGCCGGT AGTTTGATGA 
ACCTTGCCAA GCACCCCGCC AGTACCGTCC AAATCCTTGG TGCCGAGAAG GCCCTCTTCC 
GCGCGCTCAA GACCAAGCAC GACACCCCCA AGTACGGTCT CATTTACCAC GCCTCCCTCA 
TTGGCCAAGC TCCTCAAAAA CTCAAGGGTA AGATGGCCCG TATGGTCGCT ACCAAGGCTG 
CCCTCTCCAT CCGTGTCGAC GCCCTTTCCG ACGCCGACTC TCGTTCAGAT GTCTCTGCTG 
CCGAGGTTGG TATCTCCAAC CGGGTCAAGC TCGAGTCCAG ACTCCGTGCT TTGGAGCATC 
AAGCTGGTAT CCAAAGTGTG CGCAAGGTCG TGAGTGCCAA TGGCCAGCAA GGAAGGCAGC 
AGCCCAGGTT CGAGATGAGC GGTGTTACTG GTTCATACAA CGCTGCTACC GACAACGTCC 
CTCTCAACGG TGACCTCCTC CCCACCCAAC CTGCCACCGA GGAAGTAAAG GAAGAAAAAG 
ACGAGAAGAA GGACAAGAAG GACAAGAAGA AGAAGAGAAA GAGCGAAGTT GCCGAGGCTG 
GTGATGTCAC CATGGATGGT GACGCGGATC TGAGCATGGT CGCTGGTGAG ACCAAGGAGG 
AGAGGAGAGC GAGGAAGGAG GCTAAGAAGG CTGTAAGTTC ACTCCATCCG TCTTTTAGAC 
CAACGCTAAT CCTGCATAGG CCAAGGCTGC GAAGAAAGCT GCCGAGGAGT CTGGCGATGG 
CGATAAGAAG TCCAAGAAGA GACGAGCAGA CGAGGATGAA GACAGCGAGA AGAAGAAAAA 
GAAGAAGAAG AAGGACGAGT AAATATCTTG ACCGTTCACC TTCTTTCTTC TCAGTTGTCT 
TCATTTGTTC ATTTCCTTTT TATTTTGGGG TCTTTAGATG ACTCTGTGTA TGCACGTA 

 

Protein sequence

MLVLTETSVG FVVFKLSSDA KIDNKDLWKE FETPEGANKA LKVQAIQRFT STASAVEDLT 
AVQDGRLTDS LSRFLLDTVG GADDGEKKKK KKKIEEMLVV SDPKLAGTIN KALSIPVLSD 
SSTQDLYRGI RQQLASLLGG VDQKDLNTMS LGLGHSLSRF KLKFSTDKVD TMVIQAIALL 
DDLDKEINIY AMRVKEWYGW HFPEMAKIIV DNIAFARVVK AMGFRTNAVT TDFSLLLPED 
LEATLKSAAE LSMGTEISDS DMTHIHSLCD QVISISEYRT QLSEYLRNRM QAIAPNLTAL 
VGELVGARLI SHAGSLMNLA KHPASTVQIL GAEKALFRAL KTKHDTPKYG LIYHASLIGQ 
APQKLKGKMA RMVATKAALS IRVDALSDAD SRSDVSAAEV GISNRVKLES RLRALEHQAG 
IQSVRKVVSA NGQQGRQQPR FEMSGVTGSY NAATDNVPLN GDLLPTQPAT EEVKEEKDEK 
KDKKDKKKKR KSEVAEAGDV TMDGDADLSM VAGETKEERR ARKEAKKAAK AAKKAAEESG 
DGDKKSKKRR ADEDEDSEKK KKKKKKDE