Gene CNE03720 details

Gene Information

• Locus tag: CNE03720
• ID: 3257911
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006687
• Strand: +
• Start bp: 1056851
• End bp: 1063467
• Gene Length: 6617 bp
• Protein Length: 1786 aa
• GC content: 49%
• IMG OID: 638256955
• Product: DNA-directed RNA polymerase ii largest subunit, putative
• Protein accession: XP_570943
• Protein GI: 58267574
• COG category: [K] Transcription
• COG ID: [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTCCTACCT ATCACCTATT CCCTGTTATT CCCACAGGTA GACAGAGAAT TGGGGGAAAC 
CACTCATCCG GAGACACGGC CACAAGTCTT GCTAACTCGC CTCAAAAACT CGCCAACCCG 
ACTTTGGCTC CGATTCCATC CTATCCCCGC CATATTCATC TCGCCATCCA TCTGTCCGAC 
ATTTTGAATC CGGCACACAA ACCGAAATCC AGCTTCTTGT TGTAGTATTG TCAAGGGAAA 
AAATCCAAAA ATAGAGAAAG AAAGGGACAG GAGTGAAAGT GGAGAATAAC GAGGCAATCG 
GCAAACAAAA CGACAGCACG CCACCATGAC GGTCACATTT CCTTACTCCT CTGCGCCTGT 
CAAACAGGTC AAGGAGATCC AGTTTGGTAT AATGAGCCCA GAGGAGATCG TGCGTTGTTA 
TTTCAAGCCT TGCCACCTCC AAAAAAGCAA TGGGAGTGAC ATCCGCTAAT GTTTGCCACA 
GAAAGCCTTT TCTGTCGCCA AAATCGAATC CACCGAGGTC TTGGATGAGA ATGGGAAGCA 
AAAAGTTGGA GGTCTGATGG ATCCCAAGAT GGGCAGTAAG TCGTCCCGCC TTGCGCGGTG 
ATGACCTTGT TTACCCTTTT TGTGTTTTCT TTGCAGCCAT CGACAGGAAT TTTAAATGTC 
AAACATGTCT CGAAGGCATG TCCGAATGTC CAGGTCACTT TGGTCATATC GAACTTGCTA 
GACCGGTTTT TCATCAAGGT TTCATTGTCA AGGTGAAGAA GATCTTGGAG TGTGTTTGTT 
ATAGCTGTGG AAAGCTCAAG GTCGACATGG TGTGTTGATT CTTTTATTTC TAGTTTGAGT 
TGGCGCTGAT TGCTTGGTTG TTTCTCTAGC GAGATCCGAT GGTAGCGAAT GCGGTTCGAC 
GTATCAAGGC TCAACACCGA CTCAAAGCCA TTTGGGCCCT CGCCAAGGAC AAGAAGCACT 
GTGAACCTGA TGAGCTAGAT GAAAAGGACA ACGGCGATGC CACATTTGAG GACGAATATC 
TGCAGGAACA AAAGGCGGCA ATGAAGGGTC ACGGTGGTTG TGGTCACGAA CAACCCGTAT 
GGAGAAAGAA GGGATTAAAA TTAATGGGTG TCTGGAAGCC TACCGACAAG GGAGAGGTGA 
GTTTATTTTC ATTATTTTCA TCCACGGGTC ATTCTAAATG TTAGCAGGAT GAGGCTGCCG 
AGCCAGAGGA ACGCAATATT TCTCCAGGGG AAGTTTACAA TATCCTTAAA AAGATCACTC 
CCGAGGACCT GCACATCATG GGTCTCAATG CCGACTATGC CCGTCCCGAT TGGATGATCC 
TTACTGTTCT TCCTGTACCT CCCGCAGCTG TCCGACCTTC GATCGCTGTC GACGGTGGTG 
CCATGCGCAG TGAAGATGAT TTGACCTACA AGCTTTCACA GATCATCAAG TTCAACGGTG 
TCGTACGTCG AATGGAGGCG GAAGGTGTAC CACCTAGTGT CGTGAACGAA CAGTTCGACT 
TGCTTCAGTA CCATGTATGT ACATACATGG ACAACGACAT TGCCGGATTG CCTAGAGATC 
AACAGAAGGG AGGTAGGGCC ATCAAGGCTA TCAGGGCGAG GTTAAAAGGA AAAGAAGGTC 
GTATGAGAGG TAATCTGATG GGAAAGCGTG TCGACTTTTC AGCGCGAACA GTTATTACCG 
GAGACCCCAA CTTGCAATTG GATCAGGTCG GTGTGCCCAA GAGTATCGCC ATGACTTTGA 
CATACCCAGA GCGAGGTGAG TTCACTGAGT ACTTTCTGCC CTCGCATCCA TTGATTCACC 
TAAAATTTAG TTACTCCATA CAACATTGTC TATCTTCAAA CGCTTGTCAA CAATGGTCCC 
GCCACCTATC CTGGTGCTCG ATACTACGTC AAAGACACTG GAGAACGAGT CGATTTGAAG 
TACCGCAAGT CAGGTGAACC GATCAGTTTG CAGTTTGGTT GGATTGTGGA AAGACATTTG 
AAGGATGGAG AGTGAGTTCA ATTTGTACGA ATGGAAGAAG AAAGAATCTG AATTGACAAA 
CGACAGTTAT GTCTTGTTTA ACCGACAACC GAGTTTGCAT AAAATGTCCA TGATGTCCCA 
TCGAGTCAAA TTGATGAATT ATTCAAGTAA GTGGATTCAG TGCGCACATT TGGACACGCG 
CTAATTCGTC TGTTTAGCTT TCCGTTTGAA CCTTTCAGTG TATGTTCCGC AAGTACTTTC 
TCAAGGCGTT TTACTGACAA TAATATAGTA CTTCGCCTTA TAATGCTGAT TTCGACGGTG 
ATGAAATGAA CTTGCAGTAA GTACAGAAAA AGTGGAGCAG CATGGGTCGA GATTGACAGA 
TCTGCAGCGT TCCGCAGAGT GAAGAAACTA GAGCAGAGTT GAGTCAGATT GCTTGGGTTC 
CCAGACAGGT ATGTGATACG TCAAGCGCAT TCAAATCTAA GCTGATGACG GAGCTAGATT 
GTCTCGCCCC AAGCGAACAA GCCTGTTATG GGCATTGTCC AGGACACTCT GTGTGGTATT 
CGTAAATTCA CTCTCCGAGA CAATTTCCTC GATTGGCTTC AAGTCCAGCA CATTCTTCTT 
TGGCTTCCAG AATGGGACGG AACCATCCCC CCACCCGCCA TTTTTAAGCC TAAACCCATG 
TGGACCGGTA AACAGCTTTT ATCGATGACC ATTCCTAAGG GAATCAACAT CACCTACAAA 
AACAACGAAA AGCCTTCGCC TATCGACGTG ACGGATGAGA ATGTGTTAAT CGAGAATGGA 
GAGTTGGTGC ACGGAACGAT TGTCAAGAAC ATGGCGGGTA GCGCCAACAA CGGTTTGGTG 
CACGTCATCT TCCGAGAATT GGGCCACATC GCGGCTCGAG ATTTCTTTTC AGCGGTTCAG 
AGAGTTGTCA ACTATTGGTT ATTACACTTC GGTTTCTCCG TCGGTATCGG TGACACGATT 
GTCGATAAGG CAACTATGGC GGGTATCACC AATCGAATGG TGGAGGCCAA GGAGGCTGTC 
CAAAAATTGA TCCAAGAAGC TGAAGCGAAC CGAATGAAGC CCAAGCCCGG TATGACAATC 
CGAGAAACCC TCGAAGCGTC TATCGCCGCA GAGCTCAACA AGGCTCGTGA TTGGACTGGT 
AAGACGACTC AGGATAACCT CAAAGCGGAC AACAATGTCA AGCAAATGGT GGTGTCGGGT 
GCCAAGGGTT CGTTCATTAA CATTTCCCAA ATGAGTGGTG TTGTGGGTCA GCAGTTTGTT 
GAAGGAAAAC GTATCTCGTT CGGGTTCCGA CACCGCTCAT TACCACACTT CTCAAGGGAC 
GATTATGGAC CCGAGTCTCG AGGTTTCGTT GAAAACTCGT ATTTGCGTGG TTTGACTCCT 
CAAGAATTTT GGTTCCACGC TATGGGTGGC CGAGAAGGTT TGATTGATAC CGCTGTCAAG 
ACTGCCGAGA CTGGTTATAT CCAAAGAAGA TTGGTCAAAG CGATGGAGGA CTTGAAGGTT 
GCTTATGACG GTACTGTGAG AAATAGTGTG AATGAGGTCG TGCAGTTCTT GTATGGTGAA 
GACGGTATGG ACGGTGCTGC GATGGAGAAG CAGGTGAGCA TGATCATCTA TGAGAAGAGG 
AAGGCCGCTA ACATAAAACA GAGTCTGGAT ATTATCCGAC TCTCTGATCA AGCATTTGAG 
AGGCGATACA AGATTGATGT TCTTGGAGGA AGTGGCTTCT CCAAGGGGAT CCTTCAAGCC 
GGTATCGACC AATCATCCAT CTCTCTCCAA AAGCTCCTTG ATGAAGAGTT TGCTCAAATC 
TCGGAGGACC GTCGTATCCT TCGTTCCGAA ATCTACCCGG ACGGTACCCC CGGTCATCCC 
TTACCTGTCA ACATCCAACG TGTCATCCAA AATTCTCAGC AAATTTTCCA CATCGACCCT 
CGTGTTCCCT CCGATCTGGA TCCCGTTTAC TTGCTCGAAC AAAGAGATGC GTTGGCTGAT 
AGACTGCTTG TGGTGCGAGG TGACGACAAG CTTTCAAGGG CTGCCCAAAA AAATGCTACT 
CTTGTGTTCA ACATGCTTTT GCGATCCCAT CTTGCTACTC GTCGAGTTCT GGAAGAGTAC 
CACCTTAACA GGGAGGCTTT CGATTGGGTC ATTGGAGAAG TGGAACAAAT CTTCAACAAG 
GCTGTTGTCA ATGCTGCCGA GATGGTTGGT ACTCTTGCTG CTCAGTCTAT TGGTGAACCT 
GCCACTCAGA TGACACTCAA CACGTTCCAT TATGCGGGTG TGGCGAGTAA GTCTGTTACT 
GGTGGTGTTC CCCGTCTGAA GGAAATTATC AACGTCGCTG TCAACATTCG AACTCCTGCT 
TTAAACGTCT ATCTTGAACC CGAGTACAGC AAGACCGAAG AGGATGCGCA CCAGATCATG 
CGGAAATTGA CATACACTCG ATTGAGGGAT ATTACTGCCA CTGTTGAAAT CTTCTACGAC 
CCCAAGCTTG ACTCTACGGA TATTGAAGAA GACAAGGACT TTGTGGACGC GTTCTTTGCG 
ATCCCCGATG AAGACATCAG ACTGGAGCTC CATTCCCCTT GGCTATTGCG TCTTGAGCTT 
GACCGAGCCA AGGTGCTTGA AGGTGGTTAT GAAATGTCGC AGATCGTTGA TGCCATTGCC 
GAGACCGTGG GCAAAGACGT CTTTGTTATT CACTCTGAAG ACAATGCTCC CAAGCTTGTT 
ATTCGTATTC GAGTCGTTGC TGAGAAGGAG GATGAAGAAC TGTTGGGTGA CGAGGACATG 
TTCCTGAAGA GGATTGAAGG CACCTTGCTT GATCAGGTTG AGCTTGGTGG TATCACTGGT 
ATTACTCGAG TTTTCATCTC GGAAGGCAAG CAGGTTGTTG TCTCCCAGAA CGGTGAATAC 
GATCAGGAGA AGGAATGGTT CCTCGAAACG GACGGTATCA ACCTGAAGGA GGTTATGGCT 
GTCGACGGTG TCAATGCTTT CAGAACCTAC TCCAACAACT GTTACGAAGT CTACGAGACT 
CTTGGTATCG AAGCTGCCCG AAACGCTCTC TACAAAGAGC TCAACGGTGT TATTGAGATG 
GGTGGTTCTT ACGTCAACTA CCGACACCTT GCGCTGTTGT GTGACCTCAT GTGTAGCAAG 
GGCGCTTTGA TGAGCATCAC TCGACACGGT ATCAACCGAA CCGATGCTGG TGCTCTTTCA 
AGAGCGGCGT TCGAAGAGAC AGTGGAGATC TTGCTTGAAG CTGCGGCTGT GGGTGATGTG 
GATGACTGTA AGGGTGTTGC GGAGAATGTG TTGTTGGGTC AGATGGCTCC TATGGGTACT 
GGTGCTTTTG ATGTTTCACT TGACATGAAT ATGCTCAAGG ATGTCATTGT TGACCACCGA 
TTGCCGGTGC AAAACATGAT GGCTGGGGGC ATGGCTGGTG GAATGACTCC AGGAGGTGCG 
ATGACTCCTT ACGACAACCT GTCGCCCATG TGGGGTGGAG ACAAGGGAGC TTTGGGTCAC 
GCGGCATTCT CGCCTATCCA AAGTTCAGCG AACGACGAAG GTGGCAACTT TGCTTACATG 
GGCTATGGTC AGTCACCGAT GCACGGCGGT ATGTCTCCTG CAGGTTACTC ACCTTCATCG 
CCTGCTGGAT ACTCGCCCAC TTCACCATTC GCTGTTACAA GCCCGGCCTA CAGCCCTACA 
TCTCCGTTTG CGGGTGCGGC AGCCGGCGCA GCATCCCCTT GGGTTGGACG AGGCGGGTAC 
GGCGCTACCA GTCCTGCTTA CTCTCCGACA TCTCCTCAAT ATTCTCCCAC TTCTCCCCAG 
TTCTCTCCTA CATCACCATC CTTCTCTCCA TCTTCACCCA CTTACTCGCC GGCTTCTCCA 
GCTTATGGCG GTGCGGGTGC TGGAAACAGG GCGTCACCTT ATTCTCCCAC ATCTCCAGCT 
TACAGCCCGA CAAGCCCAAT GGGTGGTATC ACATCTCCGC AATACAGTCC TACGAGCCCC 
AGGTACAGTC CGACAAGTCC GGCGTTTTCA CCTACAAGTC CGTCATACAG TCCAACAAGC 
CCTGCGCCCT TCCAGGCTAC CAGTCCGAGG TATTCGTATG TTGGATATCT CGTCAGTAGA 
ATCATAATCA AGCTAACATA TATGATAGTC CCACCAGTCC TCAATTCTCT CCCACTTCGC 
CTACCTACTC TCCTGCCAGT CCAGCTTACT CGCCTACAAG CCCCCAATAT TCACCTACTA 
GTCCTGCCTA CAGGTGGGTC TTTCCTTCTT CCCATAGTGG GCTTATAGCT GATTTTCATA 
TAGTCCGACG TCGCCGGCTT ACAGCCCGAC ATCTCCAGCG TACGGCGGTG CTGCCCCCAA 
CGGCGGTACA GCTCAACAGC AAAACGGTCA GGCGAGACCT GGATGGGGAA ATACCGGAGG 
GTACGGTACA TCGCCTAGCT GGAAGAGCTA AGTTGAGAGT GGGACAATTT CGAACGTGCG 
GTGAAGCATG GGTACATGGG GGGGGGGGGA AGTTGTACTG TATCAGAACA AAAATAGGGG 
TTTAATCTTA TTTCTTGGTT TGCGCGTTGT TACCTTTTGT TTATCGGATG ATGGGTTAAC 
CGAACGTTGA AGCGTATCGT GCGGGCGTAA TCGAATAACT ACAAACAGCC ATGTTCAAAA 
TGCATTGTCT TAGAAAC 

 

Protein sequence

MTVTFPYSSA PVKQVKEIQF GIMSPEEIKA FSVAKIESTE VLDENGKQKV GGLMDPKMGT 
IDRNFKCQTC LEGMSECPGH FGHIELARPV FHQGFIVKVK KILECVCYSC GKLKVDMRDP 
MVANAVRRIK AQHRLKAIWA LAKDKKHCEP DELDEKDNGD ATFEDEYLQE QKAAMKGHGG 
CGHEQPVWRK KGLKLMGVWK PTDKGEDEAA EPEERNISPG EVYNILKKIT PEDLHIMGLN 
ADYARPDWMI LTVLPVPPAA VRPSIAVDGG AMRSEDDLTY KLSQIIKFNG VVRRMEAEGV 
PPSVVNEQFD LLQYHVCTYM DNDIAGLPRD QQKGGRAIKA IRARLKGKEG RMRGNLMGKR 
VDFSARTVIT GDPNLQLDQV GVPKSIAMTL TYPERVTPYN IVYLQTLVNN GPATYPGARY 
YVKDTGERVD LKYRKSGEPI SLQFGWIVER HLKDGDYVLF NRQPSLHKMS MMSHRVKLMN 
YSTFRLNLSV TSPYNADFDG DEMNLHVPQS EETRAELSQI AWVPRQIVSP QANKPVMGIV 
QDTLCGIRKF TLRDNFLDWL QVQHILLWLP EWDGTIPPPA IFKPKPMWTG KQLLSMTIPK 
GINITYKNNE KPSPIDVTDE NVLIENGELV HGTIVKNMAG SANNGLVHVI FRELGHIAAR 
DFFSAVQRVV NYWLLHFGFS VGIGDTIVDK ATMAGITNRM VEAKEAVQKL IQEAEANRMK 
PKPGMTIRET LEASIAAELN KARDWTGKTT QDNLKADNNV KQMVVSGAKG SFINISQMSG 
VVGQQFVEGK RISFGFRHRS LPHFSRDDYG PESRGFVENS YLRGLTPQEF WFHAMGGREG 
LIDTAVKTAE TGYIQRRLVK AMEDLKVAYD GTVRNSVNEV VQFLYGEDGM DGAAMEKQSL 
DIIRLSDQAF ERRYKIDVLG GSGFSKGILQ AGIDQSSISL QKLLDEEFAQ ISEDRRILRS 
EIYPDGTPGH PLPVNIQRVI QNSQQIFHID PRVPSDLDPV YLLEQRDALA DRLLVVRGDD 
KLSRAAQKNA TLVFNMLLRS HLATRRVLEE YHLNREAFDW VIGEVEQIFN KAVVNAAEMV 
GTLAAQSIGE PATQMTLNTF HYAGVASKSV TGGVPRLKEI INVAVNIRTP ALNVYLEPEY 
SKTEEDAHQI MRKLTYTRLR DITATVEIFY DPKLDSTDIE EDKDFVDAFF AIPDEDIRLE 
LHSPWLLRLE LDRAKVLEGG YEMSQIVDAI AETVGKDVFV IHSEDNAPKL VIRIRVVAEK 
EDEELLGDED MFLKRIEGTL LDQVELGGIT GITRVFISEG KQVVVSQNGE YDQEKEWFLE 
TDGINLKEVM AVDGVNAFRT YSNNCYEVYE TLGIEAARNA LYKELNGVIE MGGSYVNYRH 
LALLCDLMCS KGALMSITRH GINRTDAGAL SRAAFEETVE ILLEAAAVGD VDDCKGVAEN 
VLLGQMAPMG TGAFDVSLDM NMLKDVIVDH RLPVQNMMAG GMAGGMTPGG AMTPYDNLSP 
MWGGDKGALG HAAFSPIQSS ANDEGGNFAY MGYGQSPMHG GMSPAGYSPS SPAGYSPTSP 
FAVTSPAYSP TSPFAGAAAG AASPWVGRGG YGATSPAYSP TSPQYSPTSP QFSPTSPSFS 
PSSPTYSPAS PAYGGAGAGN RASPYSPTSP AYSPTSPMGG ITSPQYSPTS PRYSPTSPAF 
SPTSPSYSPT SPAPFQATSP RYSPTSPQFS PTSPTYSPAS PAYSPTSPQY SPTSPAYSPT 
SPAYSPTSPA YGGAAPNGGT AQQQNGQARP GWGNTGGYGT SPSWKS