Gene CNE03500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCNE03500 
Symbol 
ID3257816 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameCryptococcus neoformans var. neoformans JEC21 
KingdomEukaryota 
Replicon accessionNC_006687 
Strand+ 
Start bp992281 
End bp993312 
Gene Length1032 bp 
Protein Length268 aa 
Translation table 
GC content50% 
IMG OID638256933 
Productvesicle-mediated transport-related protein, putative 
Protein accessionXP_570916 
Protein GI58267520 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5080] Rab GTPase interacting factor, Golgi membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTACG ACCAAGTTCC TTCCGAATCC CATCAGTTCA TGTACGCCTC CTTTCTCCCC 
TACCTTCTCC TTCCATGCCC CTACTAACGT TCTCGTCCTT AGCCAACCTG ACGAAGACGA 
CCTTGAAGCG CTCTCTTTCT CCCACCCTAA TCCCAATCCG ACCCCTTCCG GTTCTTCATC 
CCAGCAGCAA CCCCAACCCA GCCACGTTGC TGGCCCGTCC AACCCTTCGG GTGTGTCTGG 
TAAGATTGGT CAGGATGGGC CGAGCAATAA ACCTCGAGCG GCGACGAGCA CGACGGGCTG 
GGGAGGCGTG AGGGTTGAAA CGCGGTATAC GGGAGAGTCT ACCTTGGACG AACCAGTATC 
AAAGACCATT GTGCGTATTC TTTGTCCAGA TCATCTTATT TACATGGTAT TGATGAAATA 
CCGATAGATG CGTGACCTCA ACTCGATCTA CGCCAAGCTT ATACTCATAC TCTACCCTCC 
AAAAGGCGGT CACAGCCAGC TTCTTCGAGA CTGGGACCTT TGGGGCCCGC TTGTCATTTG 
TTTGGCACTC GCCATCGTTC TCTCTATCGA TGCGCCGCAA GATCAATCGA TGCAAGTCTT 
TTCGCTGGTT ATCTCTTTGA TCACTGTCGG ATCTGTGGTG GTGACTGTCA ACTCGAAACT 
GTTGGGTGGG AAAGTCTCAT TCTTCCAGAG TTTGGTGAGT GGGCATTAGA GATTGAAAAG 
TGCTCAGGAA TGCTGACACT TTGTTTCAGT GTGTGTTGGG TTATGCAATT GCACCGATAT 
TGATCGCTTC CATTGTCTCC TTCCTCGTTC ACAACATCTT TGTCCGCATA CCCGTAACCT 
TGGCATGTTG GGGCTGGTCC GTTTGGGGTG AATCTTGTCC AAATCATTCA GAAAGATAAC 
ATATGCTAAT TATTCTCAGC ATCAATGAAC TTTTTCAACG GTACACAGCT CCCAGAGAGC 
CGAACATTCC TTGCCGTCTA TCCCATGTGC CTCTTTTTCT TTGTCCTTGC GTGGATGATC 
ATCATCCAGT AA
 
Protein sequence
MSYDQVPSES HQFIQPDEDD LEALSFSHPN PNPTPSGSSS QQQPQPSHVA GPSNPSGVSG 
KIGQDGPSNK PRAATSTTGW GGVRVETRYT GESTLDEPVS KTIMRDLNSI YAKLILILYP 
PKGGHSQLLR DWDLWGPLVI CLALAIVLSI DAPQDQSMQV FSLVISLITV GSVVVTVNSK 
LLGGKVSFFQ SLCVLGYAIA PILIASIVSF LVHNIFVRIP VTLACWGWSV WASMNFFNGT 
QLPESRTFLA VYPMCLFFFV LAWMIIIQ