Gene CNE01880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCNE01880 
Symbol 
ID3258011 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameCryptococcus neoformans var. neoformans JEC21 
KingdomEukaryota 
Replicon accessionNC_006687 
Strand
Start bp511393 
End bp513846 
Gene Length2454 bp 
Protein Length493 aa 
Translation table 
GC content47% 
IMG OID638256778 
Producttransmembrane transporter Liz1p, putative 
Protein accessionXP_570819 
Protein GI58267326 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.810548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CCAATTTAAA ACTCGCAGGA CCTCCTTCGG CGCCCCTTCG GACTTGGTGT CGCCTTCCAA 
TGGCAGCGAA GGATCGAGAG AATCGGGAAA GAACGAATCC GACAATTAGC CAGCTCGCCT
AAATATTCTC CAAGTTATAC GACGAGGAGA TTCAACGCGA AAGCGAAAAG CCGAGGTCTT
CTGTTGACGG ACGGCGGACA GATACGATAG CCACGAGAGA TAAGGGTGTG AACAGGCTCA
AACAAGATTG GGTAGCGGGG AAAGCATATA CATATTACAG GACGTTCTCC TGTGTAAACG
ATCACCCAAT CTCAACTTTT GTAACCGTAC AGCCTCTAAC AGTCGTTCTC TGATTGACAA
GAAACAAGAG GCAAGCCAAC ATTAGAGGCA TATTCACCCA ATGAGTTCAT TGAGCAAATT
CCAGGTCAAA CTGGAGACAA TATTTTGGGG GAAGCCTCCT GCAGACCCAA AAGAACGTAA
GCTTTTGCTG AAATTGGATC TGGTTATCTT GACCTATGTC TGCTTGTCTT GTGAGCCTTT
TCTACGTGCA ATGGAGATAG CGACTGATAT CAGGCCTTCC CAGATTTCTG TAATTGTGAG
TGGGACGAGC CGATCCACTG AAACCTTCGT GCCACTGCTT ATCGGGAGCC ATACCAGATC
TGGACAGAGC GAATCTTGCC AATGCGGTAC GCCACAAGTT TGACTTACTG TTAATATAGA
CTGACAAACA CATCTAGTAC ACTACCGGCA TGAGAGAAGA TGTAGGCTGT GAGTGCTGAA
TCCGTGACAC AGAAGGACAT GATCATGATT GACAATTCTG CAGTCAAAGG TAACGACTAC
ACCTACGCGA ATTCCATGTT CACGGCTGGC TATATTATTG GTCAATGGCC CTCTGCGCTC
ATTCTCTCTT CTGGCCGCAT TTCACCAAGA TTCTGGTTCC CTTTTTGCAT GCTAGCTTGG
GGGCTGTGTA CTCTTGGTTT GACCTGTGAG CGTCCATCCA AATTCGGGTC AAACAAGCAC
TGAAATCAGC AGGGGTCAAA ACTCCTCATC AGGTTTGGGG CATTCGATTT GTGCAAGCAT
TGTTTGAAGC ATCCACGTTC AGTGGTACCC ATGTATGTGC TTTTCCTGTA TAAGCGTGCA
TGGGGCAACC GGCTCACCTA TGCAGTATAT TCTTGGCTCC TGGTATAAAA ACGGGGAGCT
GGGTAAGCGT TCCGCCGTCG TGAGCCCTAT TCCTCATGAA TAAGCCTCCT CAGCTAATAA
TCATTAGTTC GCAACTGCTG CTCAATGCGG CACCTTGTTT TCTGGCATTA TGCAAGGTGC
AATCATGACC AATTTGGACG GCAAAAACGG GTTCAAAGGT TGGCAATGGC TGTATATTAT
TGACTTCATT ATTACTATTC CAATTGGTAA GTAGACACTT TACGGTGCGC CCACTGCATG
CTGACATTTG TGTAAGCTAT CTACGGTTTT TTGATGTTCC CTGGTACCCC CCAAACTACC
AAGGCTTGTT AGTGCAATTG TTCGCATTAT TCAACGGGAT GAACTAACCT GACAATGCAG
TCTGGCTTAC TGAAGAAGAA CGAGAGCTCT GTGTTCAACG TTTGCCTCCC GCCGAACATC
ATAAAATGAC TCTTAAAAGC TTAGGCAAAT CCGTCAAGAG GCTCGTTACC ACGTGGAGGT
GGTACCTATT CACTCTTTTA TTTACCGTGT CAGCCACAGC ATTCGAGAAG GTCGGGGTAT
ACACAGAGTT TAACTTGTGG CTTAAGGCTG CTGGATACAA CGCTAGCCAG AGTATGTCAC
CATTTTCAAG TTAACAGTAA TTTGAACACT AACCGAAAAG TAGTTTCTTA CTATCCCTCT
ATCTTTACTG CAACTGCCAT TGTATCCACT TATTTCCTCA CTGTTATCTC CGATGTTACC
CGCAATCGCT TCGTCATTAA CCCTATAATG TATCTGGCCG TCTTCATCTC ATCGGTGATG
CTCCTCAACT GGGACCACCT CAACAAAGGT GCTCATTGGT TCGCCTACAT CATCGGAGGC
TTTGGCTACG CGGGGCAAGC AAGCAATTTT GCTTGGGCGA ATGAGATGTG TAGGGATGAC
GATGTGGTGA GGTCGTTGAC TCTATTTTCC ATGAACTGTA AGCATATCCA ATTTCAATTC
CTGGCTTAGC TGATCCGCAT ATTAGTGTTC TCTAGCGTTT GGAATCTGTG GTATCAGATT
GTGGCCTGGC CTGTTGTCGA AGCACCCCGT TTCCGAAATG GCCAAATTGC CACTTTGGTC
ACGGGTGCCG CATCCGTTGG TATTGCCGTC ACCATTGTCT ACTGCTCCAA AAAGTGGCCA
CCTGCTATTG CCAATGCGGA ATTGGATCAT GAACGTGAAA GTGTAGCTGA AGGCGAGAAG
AGTACAAGTA AGGACGAAGA GGCAGGAGTC AGCGTTGAAG GCGTCGCTCA TTAG
 
Protein sequence
MSSLSKFQVK LETIFWGKPP ADPKERKLLL KLDLVILTYV CLSYFCNYLD RANLANAYTT 
GMREDVGFKG NDYTYANSMF TAGYIIGQWP SALILSSGRI SPRFWFPFCM LAWGLCTLGL
TWVKTPHQVW GIRFVQALFE ASTFSGTHYI LGSWYKNGEL GKRSAVFATA AQCGTLFSGI
MQGAIMTNLD GKNGFKGWQW LYIIDFIITI PIAIYGFLMF PGTPQTTKAF WLTEEERELC
VQRLPPAEHH KMTLKSLGKS VKRLVTTWRW YLFTLLFTVS ATAFEKVGVY TEFNLWLKAA
GYNASQISYY PSIFTATAIV STYFLTVISD VTRNRFVINP IMYLAVFISS VMLLNWDHLN
KGAHWFAYII GGFGYAGQAS NFAWANEMCR DDDVVRSLTL FSMNLFSSVW NLWYQIVAWP
VVEAPRFRNG QIATLVTGAA SVGIAVTIVY CSKKWPPAIA NAELDHERES VAEGEKSTSK
DEEAGVSVEG VAH