Gene CNE01860 details

Gene Information

• Locus tag: CNE01860
• ID: 3257728
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006687
• Strand: +
• Start bp: 506036
• End bp: 508167
• Gene Length: 2132 bp
• Protein Length: 513 aa
• GC content: 49%
• IMG OID: 638256776
• Product: SCR1 protein, putative
• Protein accession: XP_570817
• Protein GI: 58267322
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2814] Arabinose efflux permease
• TIGRFAM ID: [TIGR00880] Multidrug resistance protein

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCGCTTCGTA TCATTTGTTT CCTATGAGCA GGTATAAATA CTCATAGCAT GACAATCAAA 
ACAGGATTCT TGATGTCTCA TGCTCGTTGA CGTTCTTGTT GAACTTCGCA TACCGGCGAT 
ATCATGGACA TCTTACTTCG CGAAAGCCTC TTTGGCCGCA TTCTGAACTC CCTTACAAAC 
GAGAGGATTT TTCCCCATCC CCAAGATTTG ACTTGGGGGA AAGGTGTTGT TTGCGGCCCA 
TGCTCAGATC CAAGACAGCA GGCAGCCCTC GACTTCACGG GACCCGATGA TCCGGAAGCC 
CCAAGGAACT GGCCAACCTT GACAAAGTCA TTTGTCATGG CAGATATAAT GTTCCTCAAC 
TTCAGCTTCT ACGCGGCATC GGCAATCTTC ACTCCCAGCA TTCCACTAAT TGAAGAGAAG 
TTTGGCGCCA ACGCTAGCAA AGGCACTCTT GGGCTCTCGC TCTTCGTCAT TGCGTATGGC 
ATTGGCCCTC TGATTGTATG TTCGAGTTCT GCCCAATCTC TGGGCCAACG GCTTCTCCCT 
GTTGACTTCA ACACTGACAC GCCATGTCTT TACCAGCTTT CCCCACTGTC GAACCTTCCA 
TCCATCGGAC GCACGCCTGT TTATGTCGCC GGATCCCTGG CATTCTGCCT GGTGAACATC 
GGCACAGCTC TTGCAAAGGA TATCACTACG ATCTTGGTGC TTCGTTTTAT CGGTGGTTTT 
GTTGGAAGTG CACCTATCAG TATTGGAGGT GCAACTCTGA TGGAAGTTTA CGGACCTACT 
GAGGTTCCGT ATGCGATCGC CTTCTATGCA GTCAGCGGAC TGTGTGGACC AATACTGGGA 
CCCGTAAGTC GCTCTCCATG ACCTGAGGTG TCGTAGTCCG CTCGCTGACA ATGTCTGTCA 
TGGCTAGACG TTTGGGACTT TGGCAGTGTC AGTATCCCAT CAATTTTAAC TTGTAGCTTC 
TATCAAGCTT GACTTACTGA CCACTTTGTA CAGCACGCGT TGGAACACCT GGGCGGCAAC 
CCTATGGTTA CTGGCTGGAA TCACAGCATT TACCACCGTC TTCATATTCT TCTTCTTGCC 
AGAAACGTTG TCCTTCAACA TTCTGCGTCG ACGAGCACGG CGTCTTCGAG TTCAATGCGA 
CAGACCCCAT GACCAATATC CTGCCGAGCC GGATGCAAAG GCGCGCAATT TCTTCCTGGA 
TATCGTGTAC CAGACGGTTG ATGACTTCAA GCTGTCCTGC ATGGACCCAG TCATTTTGTT 
TGTCAACGTA CACACCATGC TTATTTACGG CGTACTCTAC TTGTGGTTCG AGTTCTTCCC 
ATTTGGTAAG TAACTTCAAC TCATCGTACC GCGCTTCTCA GTATTAACGC AGCTTTGCAG 
TGTTTGGGGA GATTTACTGC TTCAGCGCTA TTCAGCAAGC TTGTCAGTTC CTCGCCCGCG 
TTTACCTTGG AGCAGCTACA GCTAATCAAG ATTTCTCATA ACTTGACAGT GGCTTTTTTT 
GGCATCCTCG CTGGCGCAGT GATTTCAGTC ACAGTGTATC TCCTCTGGCT TTACTTCTTC 
TATCAACCGC GAGTGGCAGA CTCAGAGGTC ATCGTACAGC CTGAAGATCG TCTGCGCCCC 
GGACAAATTG GAGCGATCTG CATTCCCATC TGCCTCTTCA TTTTCGCCTG GACATCTCGA 
GAAAGGTATT CTTTTAAAAT CTTCATCTTG CCTTGCAAAG AAATTATCGT TAACGATAGC 
GCAGTGTACA CTGGATTGCG CCAATCATTG GAACCGCCTT CTTCGCCCCG GGATTCTACC 
TTTCCTTCCA ATCAGTTCTG AACTACCTTG GTGAGTCATA TCCGAGGCAT GTGGCAAGCA 
TTTTTGCTGG CAACACATTC TTTCGAAGTT CTTTTGGAGG AGCGTTGCCC TTGGCTGCTT 
CTCGGATGCT CCAGTCCCTG AGTATCGGAT GGGCATCGAG CACTTTGGGC TTCATCTCCA 
TCGCCATGGT TCCTCTTCCA TTTATTTTGG AGCGAGTAAG TTCAGTTACG GATGTGTCTA 
CTATCATCGA CTAATATCTT CCTTATAGTA CGGCGAAAGA CTGCGTTCCT GGAGCAAATA 
TGCGAACTAA TAGAAGAGCT GTCGGCGGAC CA 

 

Protein sequence

MDILLRESLF GRILNSLTNE RIFPHPQDLT WGKGVVCGPC SDPRQQAALD FTGPDDPEAP 
RNWPTLTKSF VMADIMFLNF SFYAASAIFT PSIPLIEEKF GANASKGTLG LSLFVIAYGI 
GPLILSPLSN LPSIGRTPVY VAGSLAFCLV NIGTALAKDI TTILVLRFIG GFVGSAPISI 
GGATLMEVYG PTEVPYAIAF YAVSGLCGPI LGPTFGTLAV TRWNTWAATL WLLAGITAFT 
TVFIFFFLPE TLSFNILRRR ARRLRVQCDR PHDQYPAEPD AKARNFFLDI VYQTVDDFKL 
SCMDPVILFV NVHTMLIYGV LYLWFEFFPF VFGEIYCFSA IQQALAFFGI LAGAVISVTV 
YLLWLYFFYQ PRVADSEVIV QPEDRLRPGQ IGAICIPICL FIFAWTSRES VHWIAPIIGT 
AFFAPGFYLS FQSVLNYLGE SYPRHVASIF AGNTFFRSSF GGALPLAASR MLQSLSIGWA 
SSTLGFISIA MVPLPFILER YGERLRSWSK YAN