| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNE00870 |
|---|
| Symbol | |
|---|
| ID | 3257522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006687 |
|---|
| Strand | + |
|---|
| Start bp | 232034 |
|---|
| End bp | 233674 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | 638256673 |
|---|
| Product | endoplasmic reticulum protein, putative |
|---|
| Protein accession | XP_570818 |
|---|
| Protein GI | 58267324 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.174287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTCACTTCC CATACATTTT CCTCATCCTT ACTTCTATTT TCTATCCCCC TTCCCGGTCC
CCGTATGTGG GAGCAAGTTC TCTACCCAGA GCTACCAGGT ATCCTTGCAT ATGTGTGTAT
CACCAAGTCT CTTGGTCCTT TGTGCGCTCC GCTCACCTCA CAATGGTTTT CCAGTTCCCT
TTCGCCTGTC GTCTGGCCGC TTTCACACTT TTTACACCAC TTGGCGTGTG TATCATCCTT
GATATCGTCG CTTACGGTGA GTTCTTCCCT CGCCAAAGTT ACCCTTTCTT CGCTTGGGAA
CGGGTGGCCG TCGGCCTTCG ATCGGCCATT GATTGGTTAC GAATACCCTC GGCGGAAATG
CTGACCAACG CCACGTCCTC CGTCTTTTCC CGCATATATA GCCATCGCTC GAACACTCCA
TTTGACAATT ACCCCACGCC GTGTCCCACG TTCACCTCCA ACCCTCACAT CTCAAATTCT
CGTTGAAGCA GTACCTGTGA CAGAGGCAGA CTCTGATTCA TCGTCCTCGG CCTCTTCATC
ATCCTGACAT ATACTGCAGC TCGCTAGAAG ATGACGACCC CCACCGCTGT TACTCTTGTT
GGAGCGACTG GTCTTACCGG CTCGCATTCC CTCAACTGCC TCCTCACCTC TCCTCATGCC
TTCTCTATCA ACGCTCTCAC TCGTCGTCCG CTTTCCGACA CTCCATCAGC GGTCAATCCT
CTCACCAAGC TCACCACTCG AATCTACAAC TCACTCTTTG ATGCTCCCAC CGATAAGGAT
GCTCTTGTGC AACAGGGCGG TATTTATGTA TCCTGTCTTG GTACGACCCG GGCCGACGCC
GGTGGAACTG CGGAGCAGGA AAAGGTGGAT TTGGGTTTGA ACAAGGATTT GGCTACTCGT
GCTAAAAAGG ATGGCGCAAG TACTGTAAGC AATTGTCCTC CAACTATTCG TATTTTGAAG
CTAACTCGAA GGCTTTTAGT TGATCCTCGT TTCAAGTCTT GGGGCCGCCT CTTCCTCTTA
CTTTTTCTAC CCACGCATCA AAGGTCAGCT CGAAGATGCT GTGAAAGCCC TTGACTTTGA
TCACACCGTC ATCCTTCAGC CCGCTGTCTT GCTTGGCGAC AGGGCGGAGT CGAGAGGAAT
TTCAGAGATT GTTTTGAAAG GTGTGATCAG GGGGATCAGG AAGGTTGGGC TGCCAGTGGA
TAGTCTGGCT GTCGAAGGCG CTGAGTAGGT TTTTGATCTT TTTGCTTCAT TGTCGGCGAA
TAAACTGACA TTCATTTTAG TATTGGTGCC TGTATCGCAC ATCTTGCTGC CAACCCTCCG
AGCGAGAAGG TTTTGACCAT TGGCGACCAC GAAATTATCG CTTACGCTAA GCAGTACCGC
GCTGCGCAGG CTCAAAGCTC AAAGTAATTG AAGAAACCTC TCCCTGCAGA TTTAATTTCA
TTCAAAGATA TAGGTTTAGA GTGTAAACGA AAATGTGTAC AGTAATTAAT TGTTCAAGGA
AAAGAAGAAG GAGAAGGTGG TTCGTGTTCT GTTTATTAGA TATTTTTTTT TTTCCTTTAT
TCCCACCCTC AAACTTGGAT GTTCAAGAGA GAGATTTCCT ACAAGATGAG GATCCTCCGT
GCTGATGCAT GCTGTGTTGT A
|
|---|
| Protein sequence | MTTPTAVTLV GATGLTGSHS LNCLLTSPHA FSINALTRRP LSDTPSAVNP LTKLTTRIYN
SLFDAPTDKD ALVQQGGIYV SCLGTTRADA GGTAEQEKVD LGLNKDLATR AKKDGASTLI
LVSSLGAASS SYFFYPRIKG QLEDAVKALD FDHTVILQPA VLLGDRAESR GISEIVLKGV
IRGIRKVGLP VDSLAVEGAD IGACIAHLAA NPPSEKVLTI GDHEIIAYAK QYRAAQAQSS
K
|
|---|
| |