| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNE00530 |
|---|
| Symbol | |
|---|
| ID | 3257914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006687 |
|---|
| Strand | + |
|---|
| Start bp | 142222 |
|---|
| End bp | 144557 |
|---|
| Gene Length | 2336 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | 638256639 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | XP_570762 |
|---|
| Protein GI | 58267212 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0364167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCT CTATCTCCCT TTCCACTTCC TATGCCTGGC CGGCACAAGC AACACACTCG
CCTATACTTG TCGCCAGGCA GGACGCAGGT AACGGTACCA CAGAACCATC CGCCGAAGCT
TCTCAGGAGG CAGCACCATC CTCCGCCGCC CCCGCACAGT CGTCCGATGC CCAACAAGGT
AAGTTCTCCT CCCCTGCATA GCATCAAAGT CGACGTCTTC GTTGATTTGA CTCATACTCT
GTCTCTTCGT CTGTGTATTG CCATTGACGT AAAGATTCCT CTCCTGCTGC TTCTGCTTCG
CCCACTCAAA CATCTGAATT ACAACCATCG CCGTCCTCGG ATGATGCTGC CCAATCTACA
TCGCCTTCCC CTACACCCAC ATCCGACGCT CAAACGACCA CTTCTGAAGC CTCTGCAGAA
CCTCAACCGT CATCAGCGGC ACCAACTTCG GATCCTGCAC CCTCATCCGA AGCCCCAGCG
TCATCTGCAC AGCCCACCTC TGAAGCTCAG CCTACAACAT CAGAAGCACC ACCCAGTTCT
GCACAGGAGT CACAATCCGC CTCGCCTTCT CCGTCGCCAT CGCCGTCTGT CACTACCACA
GCTAGCCCAA GTGAAAGTCC CAGTGCCTCA CCGACTCCTA GTCCCAGTCA AAGTGCGAGT
CCAAGTGCAA CAGAAAGTGC GAGTCCTAGC GAGCAAGCAA GCAGTCAGGG CGTGACGACC
ATTTACTCTA CCACGCAGCC TGTCTCTAGT CAAGCTGCTC AATCAAGCGC CGCACAAGCC
TCCAGGCGAG TCTCACATTA TCTTTACAGA CAACGTCGCT GACGTACTCG CAGCGCAACC
CCATCAACGA CAGAAGTCAC AACGGTGGTC GTCGGCGGCT CCACTACTGC ATCTTCTACT
GCTCAACAGT CATCCGCAGA CAATTCATCT CGAGCTGGTA CCCTGTAAGC TTTTCCTTAT
ATACGTGACG CCATCGTAAT TAATATCATC CAGAACCTCT ACCATCGTCA TTTCCGATAC
ATCCTCTAGT CAAAGTACCG CGGCAGAATC AGCATTTGTC GCAACCACCA CAGACTCCGC
CGGTCATTCT ATCACAACCA CTCCCGCTTC TTACACCTCC TCCTATGTGA CCACTTCCGA
TGGCGAAGTC TACACCGTCA CCCAAATTGT CCACAATCCC ACTGGCGCCC TCGACACCGG
TAGTTCGTCA TCTGACTCTT CCACCAATAC CTTTTTCAGC AACAAAGGTG CCGTTGCTGG
AACGTTCGTT GTGGTCGGTC TTGTTGTCAT CGGATTAATT CTCGCCTTGA GTCTGTTATG
TTTCAGGAGA CGAAGAAGAC AGAGACTCGA CAGGGAGGTC ACAGCGGCTG CCATGGCCGC
CCCTGCAGGT GCCACTGGAC GACCCCCTCT CGATGAGGAT AAAGGCTACA ATCCCTCTTC
TGGCCCCCAA ACTAGCGAAT CGTACCCTTC TACCGCCAAT CAGACACCCA TGGGCCAGTA
CGATGGATAC GGCGCAACTT ACGGCGACCC TCATGGAGGT TACGACCCGT ACGCAGCTGC
AGCGGCCGGA TATGGCGCGA CGGGCGGATA TGAAACCATG CAACCCGGCG GACAAGGGTA
TTATTATGAC CCTCACGCTC CTCCAGAGCA GTATAGCGTC CCTGAGCAGT ACAGTGATGC
CCCAACGCAT TCTGGTGAGG CGTATAGCGA TGTACCGCTC AATGAAGAGG GGCAGCATTA
CTACTTTGAC CCAAGCCAGG CGCATGCCTA CGCACCGGAA GGAGAAGGTT ATGGAGATGC
TTATGGAGGG TACTCGGGAA CAGAGGGAAG TGTTGGGACG CCGCAGCATG AAAGGGAAAA
CCCGTTACAT GTAAGTGTAG GGAGTGTGAC GGAAGTAAAA TGATTTGCTG ATCGAGACGT
AGGTTGCGAA CCCTTCTCGG CAATAAATGG CATATGTAAT ATATCGATCT TTTACAATTT
TTTTGCAAGT CATTTGTTTC CAACCATCTT GTTCTTCAAC TGACCCCCCC TTCTCAGCCA
AACATCCATT TCACAACAGA TATCATATAC GTCCCAAACA CTCTTTTAGA ATAAAGTTAC
GGACTCTCGG TAGGGATTAT GTGGGTTTCA GCATGAGCCT GTTTTTCTTT TTTTTTGTGA
TTTCTCACTA CTATTCGCAC TTTCCTTTCT TTTGCTTTTT CGCTTCTTTA TAATTCAAAA
AGCCAGTCCC TGGATCAAGC CCCAGGCTGA GCTAGTCCTT CCATCTGAAT GCTGCACTCG
CATCCGTGTC CGTTCCTTTC TGTAGCCTCG TACTTGTAGC TTATCTATCA GCTGAT
|
|---|
| Protein sequence | MPASISLSTS YAWPAQATHS PILVARQDAG NGTTEPSAEA SQEAAPSSAA PAQSSDAQQD
SSPAASASPT QTSELQPSPS SDDAAQSTSP SPTPTSDAQT TTSEASAEPQ PSSAAPTSDP
APSSEAPASS AQPTSEAQPT TSEAPPSSAQ ESQSASPSPS PSPSVTTTAS PSESPSASPT
PSPSQSASPS ATESASPSEQ ASSQGVTTIY STTQPVSSQA AQSSAAQASS ATPSTTEVTT
VVVGGSTTAS STAQQSSADN SSRAGTLTST IVISDTSSSQ STAAESAFVA TTTDSAGHSI
TTTPASYTSS YVTTSDGEVY TVTQIVHNPT GALDTGSSSS DSSTNTFFSN KGAVAGTFVV
VGLVVIGLIL ALSLLCFRRR RRQRLDREVT AAAMAAPAGA TGRPPLDEDK GYNPSSGPQT
SESYPSTANQ TPMGQYDGYG ATYGDPHGGY DPYAAAAAGY GATGGYETMQ PGGQGYYYDP
HAPPEQYSVP EQYSDAPTHS GEAYSDVPLN EEGQHYYFDP SQAHAYAPEG EGYGDAYGGY
SGTEGSVGTP QHERENPLHV ANPSRQ
|
|---|
| |