Gene CNE00190 details

Gene Information

• Locus tag: CNE00190
• ID: 3257600
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006687
• Strand: -
• Start bp: 38780
• End bp: 45692
• Gene Length: 6913 bp
• Protein Length: 2076 aa
• GC content: 50%
• IMG OID: 638256601
• Product: structural constituent of nuclear pore, putative
• Protein accession: XP_570713
• Protein GI: 58267114
• TIGRFAM ID: [TIGR03174] CRISPR-associated protein Csc3

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.357579
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAGGAG ATATGATGGC GGGCTTATCG CAACCGCTCG TCGCCCAACT TTTTATGTCA 
CGTGCTTTAA TTTGGAATTG TTACGTAAAA CTCATAAAGA AGCTGCACGA GAATTGGGCT 
CCTAAACATT CAATCACTGT AAGACTCTTG AATCCTATAT ATTCTTCCTT TATCACTTAC 
GATTTCTTCC CCACAGGACA TCATGTCCAC CCTACCCATA CAACAGTGGG ATCCAGACCA 
GTTCTCGGAT CTGCAACATA TACTCGCCCG CGTACTCACA CAGCCTACCA CTTCCTCCTT 
GCGAAAACTG TACGCAACTC TTGAGCAGGC GAGACCATGG TTGTTGAACC TCACTGCTTT 
GCCGGGCGTT AATGACAAGG ATAAGCAGTT TGTTGAGAAA AGTGAGTCTC TATTGCGCGC 
GCAGTCACAC TGGAGTGAGT GAGTGATGTG TTGAGCTGAC ATGCGCTTCG CCCAGACCCA 
ATAGAGCTTG CCAACGGGAC GTCAATAAAC GTCACCGGCG ACCTCCTCAA CGCAACAAAC 
GCCCTCTCAT CCTTCCTCTC TCTTTCGCAC CTCTTCTCCT CCATCCTCTC TCTTCAAGCA 
GAAACACACC GCGCCGTCTA TCCTTCACGC TCCACCCCGG AGATTTCGAT CTACTTGTTA 
CATAGATGGC AGACCGATTT ACTCGATTTT TTAAAGGAAC TGTTGAAGGT AGTGTTGGAG 
CAGGGGGATA TGATGGGGAG TGGGTGGGAG GGGTTGAAGG AATTTGTGGA AGATTTGTTG 
GGAGCGAAAG TGACCCTTGC AGATGGCGGT GGGAAAGAGG GGACCTTGGT AGACCAGATA 
CTCAGCCAAC TATCTATTCT TCAGACGAAA ATCTCTTCCC TCCTGTCCAC TTCGTCTTCG 
GGACAGGGAT ATGAACTCCA ACAATTCCGG CTTACAGCTC TCCGAGCTGA GCAGAATAAG 
TTGGCAGGGA TACTTGCGTT GATTGCGGAA GGAGGCAGAT TGGGGAGGGG CCAGGTTATA 
AGGGTTTTGA AATGGTTGGC CAAGGTGGAA AGGATGGATG CTGTGGTGGG TTTGGTGGCA 
GCGAGCGTTT GGGCGGCGTG GAAGCCCCTG GAAGTGCTGG ATGCGTCGGA CGCGAGGTAT 
GATGTGAGTT TGTCTTTTCG TGTTTCAATA CGTATGAGAA CGGAGCTGAT GGAGGAGGAA 
AAGGTTGCCG AGGATTGGTG TCACGATATC AAGTTCCTCA AGCTTGCCTC GAGTCTTGCC 
GTGAGTACTG CCATCATTCA CTAAGCCAGC CAAACTAACA CATGTACAAT GATGTAGCTT 
CAAGAACGGT GGGCGATCCC TCGTCTTCGA GAATCCATCA AACTCTCCTG GTCCCTTTTC 
TATCTATCCT GCATCAAACA CGACCCCAGC GTCATCCAGA CAGGTATTGA TCAACATGAA 
ATGGAAGGAT GGTTGCTTGA CTCTATCGCC AACGGCGCAT TCCAGTTCCT GCACGAGCTA 
GTCATCTCCA TTCGCCAAGA AAGGGGCTGG GATGAGCCTG ACGAGGTGAA GGAGGCTGGC 
ACGGATTCGC TTGTCAAGGT TGCACTTGCG TCGGATAAAG GGAATGACGA GTTTTTGTTT 
AGGCAGTTGC AGGATTTAGT TGATATCCTC GCCGGGAAGA AGCAGTTTTT GCGGAATCTA 
CGGAATAGGG AGGAAGACGC TTTGATTCGA CGATCGTCTA TTGCTCTTTC GCACATAAAC 
CCTAATGCCG ACGCCAACGT TTATAATTAC CAAACTTTTC TCCGCCTCTT TGCTTCAATC 
TACCGCTCCC TCCCTCCTGA TTCTGCTCTC GATTTGTGGG GAAATCCGAC GTTCACCGGC 
ACAATTCTCG ATACTCGTGG TGGTTTCCCC GGTCCAGCCT TTTGGGAAAT GTTATCCTCA 
ATTTCCTCTG GTCCTTCCTG CGCTGCCATA AGCTATGAAA GGCTCAAAGA CACCCGTCTC 
CCTTGGACAG CTTTATTCAA GTTTTATCAA CATTACATCG ACATCATGCC CCACGCTTAT 
GAACCTATCA AAACAACACG TAACCCCCCG CCATCGCTAG ACCCTATGCC TATGGAAGAG 
GTGGAGATAT GTAAAGGTTG GACGGAAGTG TTGAGCACGG TGGTGAAATG GTCGCCCGCA 
GCGAGGGGTG CGTTATTGCA GATGAAACCG CACCCACTTG GTGTGCTCTG GGATTTCGTG 
AATTGCGAGA ATGTGCCACT CCATTTGAAG GCGGCCATAC TCAATGCTAT CACTGCTTTC 
ACTTCTCGCC CTTCTCAATC TCAGTCGGAA GGCTCCATTA CCACCCACGA TCCAATGGAC 
GACGAAGTCC TTGTGCAGTC AGTAGGGTTT TACGAAAAGA TATCATACCG CGATCCGAAT 
GCAGATGTGA GGTATCTGGA AGGAGGAAGG ATACCAGCTC CGGTGGGGTG GTTGATTAGG 
ATGGGATTCT TGGAGGGGGA AGCGGGGAGG TACGAGCTGA GTCGTGCTTA CGTCAATTTT 
CTCACTGCAC TTTTACCTTC TCCCTCTTCC TCATCGTCAT CCTCTACATC GGGAACCGTC 
TCAATCTCAT CCACATTAGG GAAACCTACT CTATCGTCTA CTCGTCCCAG GTTGAGCAAC 
ACTCTGAGAC GCGGGACTTT CCAAGTCATC GATGGGATAT TACTTTCACT CAAGATGAGG 
AGGTATACGA GGGATTCAGA GAGATGGGAG GTCCTAGATG GGTTGACAGC ATTTTTGGAA 
AGGGCGGTCC TAGGGTTCGA TATGAGTGAG CTTCTAAACC TAGGCTCTGG GTCTGGTTCC 
AGCTCTAGCG CGAGTTCTGT TGGAGGAACA GGAGGATCAG GTAGGGGAAT CGGACAGATC 
GCCCTGGAAT TGAGTGAAGA ACCCGGCTTT ATCGTCATCC TCCGTCTGCT AAGCGAACGT 
GATATCTTTG CCGTCCTCGC AGAGGTTTTG GACAGTGCCG CTTCTTTGGG CGGGAACAGA 
GAGAGGAAGA AGATTGTGAG CAAGGTTTTG AGGCAGGTAT TGAGGATCTA CCACCGTGTG 
ATGGAACTCC AATTGGTCTT TGCCGACGTA CTCCTACTCG CTCTTACCGA CCCTTCTCGA 
AACCCAGTAC ATACTCTGAA ACGACCGTAC GGCCTTCAGC CGCTGGATAA CCATCTCCTC 
GCACATTTGA CAAACGTGAA CAATATCGCT TTGTTGATAG GCGATGATGA CCCAATGATC 
TCGTACCTTT CCACCAAACT TATCGCGTTG CTCTCCAATT CTCCAGTGTT CAATCGATCA 
GACTTGTTCC AAGGGGAGTA CAAGGGTGAG GTGAATCGGT TGGCGGGGGT GTTGGACGTT 
TCGGATGATT CAATCCGGAT ATTGCAAGGA TTTGTGAGGA GGTTAGATGT GGAAAGTGAG 
GATCCGGAAC AAGGTGTGGA GGCAGTAGAG GAGATAGCGT TGCATGGGGA TATCGAGCAG 
GTCAAGGAAG AATTACCCAT GGTCATTCGT TCGGTTATCC TCGACATCCT GATCGATGGT 
ACATCGTCAT CCAACACCTC ACCTAACATT GCTCATTTCC TTCTCGGATA CGATTTCCGT 
CATCGCCAAT TCTCATTCTC CTCTGAAGAG GGGTGTCTTC AGGTTGTTTT GAAGCAAATG 
CTTGAAGGTG CCGGATTGGC CGGATCGACG GGTGAAGGTG ATGGGATTTT GGAGATACAT 
CCTCAGTTGG GAGCGAAGAG TGCTGAACTA GTGTATCAGC TCTTCTCGGG AGTGTTGACT 
GGAAGAGCGA CGTTGGCGTA CGCAATGTCC GTCACGGGCT ATTCGGCAAG GCAACTCGCC 
TCTTTGCCCC GCCAGTGTCC TGAATGGCAA GGCCTCGTTC CCCAGGGCAG TTCCCTTTCG 
GCCCCCTCCA TTTCCACAAC AGGATTGGGA TGGGCTGTGA CAAGGGATAC AAAGGTAGAA 
ACCAGCTCTG AGACCTTGGT GGCCTACCTT GAATTCCAAC GATGGATCAT CTCAAGTGCC 
TCTCTGGAGA TTTTTACCTA TGACGGCCAT GGCGCATCGG CTTCTCGTAT CGCCCAGATC 
CTTTTCAACG GCCAAACACA AGCCCTTTCC GATAGTGGCG ACGTAGGCGA TGGTGAAGGG 
GAAAACCGGC TCCCTCCGCT TTTGATCGAC CTCCTCAACT CTGTTGATGT ACAATGGGTC 
GAAGAACCTA TCGATAACCG CCAGCTTGAA TTCTATGCGT CATTTGATTT CGATGCTTAC 
AAACGACCGG ATGTGGATTG GTGGGATATT AAGGGCCTCG GAGCTGGTTT GACGGCGTTC 
AAGAAACAGC TCGAGGGGCA GGGAGCGATC ACTCAGGCGT CGATCCCAGG TGTAGATGCC 
GAGGCAGAAT ACGTGCTTAG GCGTTTGGGA GGAAAGAACA GGGAAACCGA CGTAGCGATT 
GCAAAGGGCA ACTTCCTTGC CGCTTGGAAC GAATTGCTCA AGGTGGGATT AACCTTGCTC 
TTCGCTAGGC ACATCACAGA AGATCACCAA GAAGCTATTC TCTTCGACCT TCTTGAAGGT 
TTACTTGCTC GACTTGACGG AGAGATTGAC CTTGCTCCCG GTGTGGAGGA TCTGTTATGT 
GAATCGAGCT TGGTGGTGAT GACAACATTG GTCGGCGTGC TCCAGAAGTT TGAAGGAGTC 
AATCTTCCAG TAGAACAGCT CGGAGCGGTT TTGGCAAAGG TTGTAGATGC TGCTACGAGG 
CCGGGATCGA CAGAAACTGC AAGGGGAAAC TTGTATGCCG CGATCACACA ATACCTCCAG 
CTCATCATCC CAGCCAACTC TAACATCCCT GATGATCGAT CCATTTCCGG TTCAACAGTT 
GACCCTCTCG CTTCCTTTTC CAGTACTACC ATGCTTCAGC GCATAACGCT TCAAATATTT 
GCGGCCAAGA AGGAGAGACT CGTACCCGGG CTTTGTAGAG ACGCCATGGA TGATCGGGAT 
GTGTGGAAGA CGCAATGCTT TGCGTTATTG GGTGGTGTCG TCAGCATTTG CCAGGGAGAG 
AGGGATAGGC ACGTTGTGGC GCCGTTAATT AGCAATGGGT ACCTGCCCTT GTTTGTGAGG 
AGTGTTAAGG AAAGGGAAGG GGCATTGATG GAATGTCTTG CACCTGATGC TGGTGAGTGT 
TTATGTCATC CGATAGAGAT ATGTAATAAC GAATTTGTAA CAGAAAACCT CCACGCTTAC 
TGGGTGTTTG AGGCCAAGAT CGCCTTTCTA ATCGCTCTCG CATCCACTCG CAAGGGTTCC 
GAAGACCTCC TCGACGCCGG CATCTTCGAG ATCTTTGCCA CATGCGGCTT CATCAATATC 
CAGCTGAACG AGGGCATGCT GGATGAGTAC GCTGGGGGAG AGATTGTCGA GAGGCAGCAT 
CGAGTACTGG TGGCCAGTCT ACAATTGCTC ACCCGAGTGC TGTCGAGCTT GCACAAGTCT 
GCAAGGTCAG GAGCTGGTCA TGTGAGTCCC CTCCTTAAAT TTCTGACACA TTATTAGTCA 
ACTGATTGTG TCTGTGTACT GGTAGGCCAT AAGTTTCCTC AACGCTCACC GCGAAGCGAT 
TCTTGCGCTC GTCCGTGAAC CTCAACGAAA CCTTACAGTG ACCGCACTTG ATGAATGTCG 
ATTGGTGGTA TCTATTTTGG CCATGGTTGT GCACAAGGTT TCTCCCGAGG ATCTGGTGAG 
CCAATGCTGA TTCTGCTACT ACCTGCGCGA TATTGACTAG TATCGGCGTA GTATTCCCCG 
TCAAGTTTTG GCGCTTTCCA CCTTGCTGTG TTGTCTGCCG CTGCTCACGC TTTTGACAAA 
AACACTTGGG TCGAAATCGC CGAGGAGAAT AGCAAAAGTA CGCCGTGCTC ATTTCTTATA 
TTGGCCATTC ATCTGCTTAC TATCGTCGAC GTCAGTTGAG TCGCAGATGG TACTTCTTAA 
CCAAGTCCTG CTTGCCTTCC TCACCGCCGC CACAAATGGC TTGAAGGCTG GATCTGGGAA 
TCCCGTGTTT ATCACCGGTG TACAGAGGAG TCATGGTAGC GCTGTCAAAT ATATCGGTGA 
GTTTCTTTCC TCCCCATTTC TTTGAAACCT GAACTTATGA CCTTCCAAGC CTCTGCTCCT 
TCACTACAAA TGGCCGTCAA CCTTCTCTCT GACCTTGCCG AGACGACGGA AGAGGTGTCT 
AACCAGTATG AGGTGATCCT TGATCGAATG CAAGACGGAA GCGATTTGGA AGAAGAGGAC 
GTCGAAGTGA GTCATTCGCT AGACATTGAT TGTTGGTATT GACACCTCAA CAGAAGCTTC 
GTAACGAGTT CATTGGCGAT GCCCCCTTAT CAGATGATTT AATCAAGGTT GCCTTTATTG 
CAAGAAGCCA GATGTTGTTC AGTATGTCAT CCTACACAGT CATGTATGAA TGAACCCAGC 
TAATTGGGCA CCACAGATAT GATTGAGTCG CTCCTTCTTC TCATATGGCG ACATCTTTTA 
TTCTATGCCA ACGACGTTCG GGGATCTCTT GCCCCTATCC GGCCAGAGAA CCTCTCTCCT 
TCACTCAGCT CATTCGCCAT GTCTCAACAA GCACAGATGG AAGCTTCGAG GTCAAATGCA 
GGGACAATGA AAATGCTGGA AAGAGTAGCG GCGGGTCTGA GAGGGACGCT GATACGATTA 
GATGATATGG AAGTGGTGAG TCTATCGTTC GGCGGTGTTC GCAATTCTGT TAACGTTTAT 
CATGTAGAAC CTTGAATTGA GGAGACTCGC GACGGGCGGA GGTGCAAGAG GTGATGCATA 
TTCTGGCATG CTTGTAAGGA GGTTAAAAGA GATAGTTGGG GGCCTAGTTG GTGAAAGGGA 
AATTATGGAG GAGGATCAAC AGTAATAAGA ACATTGTTTG GTACGATTCC ATATGAAAAG 
GCATATATAA ATG 

 

Protein sequence

MRGDMMAGLS QPLVAQLFMS RALIWNCYVK LIKKLHENWA PKHSITDIMS TLPIQQWDPD 
QFSDLQHILA RVLTQPTTSS LRKLYATLEQ ARPWLLNLTA LPGVNDKDKQ FVEKKLANGT 
SINVTGDLLN ATNALSSFLS LSHLFSSILS LQAETHRAVY PSRSTPEISI YLLHRWQTDL 
LDFLKELLKV VLEQGDMMGS GWEGLKEFVE DLLGAKVTLA DGGGKEGTLV DQILSQLSIL 
QTKISSLLST SSSGQGYELQ QFRLTALRAE QNKLAGILAL IAEGGRLGRG QVIRVLKWLA 
KVERMDAVVG LVAASVWAAW KPLEVLDASD ARYDVSLSFR VSIRMRTELM EEEKVAEDWC 
HDIKFLKLAS SLALQERWAI PRLRESIKLS WSLFYLSCIK HDPSVIQTGI DQHEMEGWLL 
DSIANGAFQF LHELVISIRQ ERGWDEPDEV KEAGTDSLVK VALASDKGND EFLFRQLQDL 
VDILAGKKQF LRNLRNREED ALIRRSSIAL SHINPNADAN VYNYQTFLRL FASIYRSLPP 
DSALDLWGNP TFTGTILDTR GGFPGPAFWE MLSSISSGPS CAAISYERLK DTRLPWTALF 
KFYQHYIDIM PHAYEPIKTT RNPPPSLDPM PMEEVEICKG WTEVLSTVVK WSPAARGALL 
QMKPHPLGVL WDFVNCENVP LHLKAAILNA ITAFTSRPSQ SQSEGSITTH DPMDDEVLVQ 
SVGFYEKISY RDPNADVRYL EGGRIPAPVG WLIRMGFLEG EAGRYELSRA YVNFLTALLP 
SPSSSSSSST SGTVSISSTL GKPTLSSTRP RLSNTLRRGT FQVIDGILLS LKMRRYTRDS 
ERWEVLDGLT AFLERAVLGF DMSELLNLGS GSGSSSSASS VGGTGGSGRG IGQIALELSE 
EPGFIVILRL LSERDIFAVL AEVLDSAASL GGNRERKKIV SKVLRQVLRI YHRVMELQLV 
FADVLLLALT DPSRNPVHTL KRPYGLQPLD NHLLAHLTNV NNIALLIGDD DPMISYLSTK 
LIALLSNSPV FNRSDLFQGE YKGEVNRLAG VLDVSDDSIR ILQGFVRRLD VESEDPEQGV 
EAVEEIALHG DIEQVKEELP MVIRSVILDI LIDGTSSSNT SPNIAHFLLG YDFRHRQFSF 
SSEEGCLQVV LKQMLEGAGL AGSTGEGDGI LEIHPQLGAK SAELVYQLFS GVLTGRATLA 
YAMSVTGYSA RQLASLPRQC PEWQGLVPQG SSLSAPSIST TGLGWAVTRD TKVETSSETL 
VAYLEFQRWI ISSASLEIFT YDGHGASASR IAQILFNGQT QALSDSGDVG DGEGENRLPP 
LLIDLLNSVD VQWVEEPIDN RQLEFYASFD FDAYKRPDVD WWDIKGLGAG LTAFKKQLEG 
QGAITQASIP GVDAEAEYVL RRLGGKNRET DVAIAKGNFL AAWNELLKVG LTLLFARHIT 
EDHQEAILFD LLEGLLARLD GEIDLAPGVE DLLCESSLVV MTTLVGVLQK FEGVNLPVEQ 
LGAVLAKVVD AATRPGSTET ARGNLYAAIT QYLQLIIPAN SNIPDDRSIS GSTVDPLASF 
SSTTMLQRIT LQIFAAKKER LVPGLCRDAM DDRDVWKTQC FALLGGVVSI CQGERDRHVV 
APLISNGYLP LFVRSVKERE GALMECLAPD AENLHAYWVF EAKIAFLIAL ASTRKGSEDL 
LDAGIFEIFA TCGFINIQLN EGMLDEYAGG EIVERQHRVL VASLQLLTRV LSSLHKSARS 
GAGHAISFLN AHREAILALV REPQRNLTVT ALDECRLVVS ILAMVVHKVS PEDLYSPSSF 
GAFHLAVLSA AAHAFDKNTW VEIAEENSKI ESQMVLLNQV LLAFLTAATN GLKAGSGNPV 
FITGVQRSHG SAVKYIASAP SLQMAVNLLS DLAETTEEVS NQYEVILDRM QDGSDLEEED 
VEKLRNEFIG DAPLSDDLIK VAFIARSQML FNMIESLLLL IWRHLLFYAN DVRGSLAPIR 
PENLSPSLSS FAMSQQAQME ASRSNAGTMK MLERVAAGLR GTLIRLDDME VNLELRRLAT 
GGGARGDAYS GMLVRRLKEI VGGLVGEREI MEEDQQ