| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CND05230 |
|---|
| Symbol | |
|---|
| ID | 3257026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006686 |
|---|
| Strand | - |
|---|
| Start bp | 1427658 |
|---|
| End bp | 1431867 |
|---|
| Gene Length | 4210 bp |
|---|
| Protein Length | 1149 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | 638256459 |
|---|
| Product | Nuclear elongation and deformation protein 1, putative |
|---|
| Protein accession | XP_570158 |
|---|
| Protein GI | 58266004 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5083] Uncharacterized protein involved in plasmid maintenance |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.197661 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACCTCTTCC TACCCCTCTG CTCACATCTT CGATCTCCAT CCCCCTGCTC TTCCTTCCTC
CGTGCTGGCG CCACGCAACC CACTCTCTTT CCTTTGGGGA TATTTCCCGT CCCCACTGCT
TGATCTGTCT CCATAATGCA GTATCTCTCC AAAGCTTACA ACTACTGTGA GTCTCAAGCC
TCCTCTGCGT CTTATTCTAC TAACACCAAA ACAGACTCTG GCATAAATCC TGCAACTCTT
TCAGGTGCTA TCGATGTCAT CGTCGTCCGA CATGTCGACA CTGAGGGCAC AGTCACTCTC
TCCTCTTCGC CGTTTCATGT CCGTTTTGGC AAGCTTCAAG TCTTGCGAGC AGCAGAAAAG
CGGGTTACTA TAAGACTGCC GAATAATCTT CCTGCACCTC ATGTGGCTCC GTTTCATATG
AAAGTTGGCG AGACGGGAGA GGCGTTCTTC GTGGTGGAGA CGGACGAACA GGTGCCAGCG
GATTTGTTGA CAAGCCCGGT TGTCATGCCT ACCGAAGTGC GTGTGGTCCA TTAGATCGTA
TGATGTTAGC TGACATGGTA GCAGTCTGAA GTGCCGCCTT CACCGCCCTT GTCGGGTGAG
CATCCTCCGG AAGAAGAACA TCTGGAATCA TTAACGCAAG AGCCGTTTGG CGATACCGAG
CAGAAAGTCC CACATGAATC GCCGCTTGGT GAAGTCGACT TTCTGGATCT CAATGCATCG
CCTCCTGGAA CCCCGAATAA GCGAAGGGGA GATGATCAGC AAGAAAAGCA TACGGCTGCC
AACATCTCAA ACTCTTTGAC CAAGTCCTCT CTCCTCGGTA CCGCTTCGAC TCTCCTCCCT
AGTCCTTTGA AACCCTCACC GTCCAAATAT CCCGATAATA GCCCACCACC GCCTCCTGCC
CGTCAGCCGT CCATTGATGA CGGTATCCCC AATGGCAACG ACGAATCTTT AGCCAAGCAG
TCCTCTCACC CTGTTGTGTC CAATACCAAC GACGAACCAA ACCCCATGCA AGCACGCCCG
GGAGAGAAAA CCAGTCTCCC CCTGCGCGAC CTCAAACTTG AAAAGCTCAA ATCGGATAGT
CACAACGCTA CAGCTAGTGT AAATGCGACG CGAGGGGAAG AAGGCTTGCC AAAAGTCAAG
GCAGGCCAAG GAGAGGGCCC AGAAGTGGTG TATGGCAAGG ATGTGGTTCT CGATATGGAT
GGCTATCATT CTTCAACCAA TGCGGATGGG TCGGCATCGG AGAATGAGCA AGATGGTTCT
GTGGAGGCGT TTATCCAGGA TCTCTTGGCT TCTATCCAGC CGGCAGCATT GGCGATGGAC
GGCCGACCAA AACCTAGAAA GTCCAAATCG GCGGATACAG AGGTGCCTTC CTCCAGAAGC
GATGAAGACG AGGACGAGGA TGAAGATGAA GATGCACATA CCCCTGTAGA ATATTCCCCA
GGACAAGGTC TCTCTTCTGC TCGGCAGCCT TTACCTGTCT CGAACCCCCG TAACCGGCCA
CCCACACGCA GTCGGCTTGA CCGTGGTCAG TCTGAACCGC CCCAATTACA ATCGCAAGAT
GACCTCTCCC GGTCGCCTGA TCGAGGCGCT AAAGCCGCAA TGGAGATGGA GTGGGATTGG
GGACGCCGCA AACCTCTCGG TGGTAACGGT GAGATAGACG AGGGAGGTTC AACCAGTATT
GGAAGGCCAC CACTAGGCAG ATTGAAGAAC GTGGAGGAAA ATCCGTACAT GTTTGTATTA
GAAGTAGGTA AGAGAACGCA CATGTTTGAG CTTGCTCTTT GTGAAGAATG GGGACACAAC
TCTACTGTAC GTGTGTTTCG TTCGTCCACT TTTCGAGCTT TGCAATTGAC TGACTTGTGC
CTTTTTTTTG CAGGAGGCGT CTCAAGAAGC CGCTTTCATC AAGAATCGTC TAACCTTTCA
AACTTTCATC GAATCTCCTA CTGTTGTGGA TGACGTCAAC ATCATCCTAC GATACAATGA
ACTCTTTTTC ACCTGGTCCA CGGGTTATCG CTTGTTATAC GCCCTTGCCA TGTATCGCCG
AGCCCTCGTA CCTCCCTCAG CCTCGCCGAG CTCGCCCACT TTACCAGAAA TGTCGTTATC
AGGCCTGGGC GCTGGGGAGC AACGCAGGCG GTCCGATAGT CGAGTAGAGA CAGGGGAAGG
AACGCAAAGA CAGAGTGGGT ATGGATGGTC GAGATGGTGG AGGAGGGGAC AAAGTTCGGG
CGCTAGTGCT CCGCAAGGAC CACCTTCCGT GCCAGGGCAA GAGCCGCCCC GGGAACCGAA
GACTGAAACC GCACCGGCTC GTACAACACC TGTCCCCGGT ACGCCCGCTA CAGATGTGCA
GGGTCAAGAT AAAGAAGGAG GGGTTCCCGG TGGGACCGAA ACCGAAGCTG GGACCCGTGC
CGGTCTTCAG GGGGAAGATG AAAAAGTTTT ACCAGTTGAA GGGGTAAAGA ATTACGCAAA
GACTTTGCGA CTGTCATCTG AGCAACTTGT AAGTGTTCAT ATCTCCATTT GCCATCCCGC
CATACCTTTT TCTCCCCTTT CTTGATCTTT TAATGCAATA TAAGATTGAT TTTTCGATCA
TGAGCTGACG TAGGGATTGT ATAAAAGCAA CAACTTCATC TCAAGCCTGG ACCAAACACT
GTTCAGTTTT CAGTCACCTC TTCTTACTCT GGCCTGGCCA CGTGCGCTGC GAGGATATTT
TTATGGGAGG AGACCGATCA GATTGTCATC TCAGACATTG ACGGTACGAT CACCAAGTAA
GCCCCTGTTT CCATGTTTCC GTCTTGTCCA TTGAGGTGAT TCCGAAACTG ATTAATCACC
GTTCGTCACA GATCTGACGC CTTGGGCCAC GTTTTTGCCG CCATCGGACG TGACTGGACT
CATCTCGGTA TCGCCAAGCT CTACACTGAT ATTGGCAACA ACGGTTACAA GATCCTTTAC
CTCACTTCGC GCGCAATCGG GCAGGCGGAT ACGACGAGAG AGTATTTGAA GAGCATTGCG
CAGGGGCAGT ATAGGATGCC TGAGGGTCCG GTGTTAATGA GCCCTGATAG GCTAATGGCG
AGTCTACATC GGTGAGTGTG TTCTGTATGT AATATTGAAG CTACTGGCTG ACTAAGATTG
TTGATAGTGA GGTGATCATG CGCAAACCAG AACTCTTCAA GATGGCCTGT CTCCGAGATA
TTCAACGTTT ATTTGGATCC CAAGCTAAAG AAGCATTTTA TGCTGGATTC GGCAATAGGA
TCACCGATGC GATGAGTTAC AGGAGTGTAG GGATCGACAC ATCCAAGATC TACACGATTG
ATTCGACAGG TGTCGTGAGA ACAGAGCTGC TGCAGGCCGC GGGACATAGG GGTAGCTATA
TCCAGCTTGT AAGTTTTTGG CAGGGTTCAT TTGCTGCGAT CGCACGTCTA GAAGTATACT
GACGATATAA ACCCGGTGTC TAGAACGATC TCGTCAATGA AGTCTTCCCC CCTGTATCTA
CCAAATTTAA ACCCGAATAT ACCGATTTTA ATTACTGGCG CGATCCTGTG CCCGACATAC
CTCTACCAGA CTTTTCCCCG CCTTCCCCAG CTCTGTCTGC TAGGTCAGAC ACATCCGGTC
GTTTGAGTGT CCTGGGCAAG ATTGCTGGGA TCGGACGGCG TTCGTCAAGG GCTACGATTG
GGCATGCTCA TAGCCCGAGC TCTGCAAGTA TGAGCGGTGC TTCAGCATCA CAGATAGATG
CTTCCAGCCG GCCATCAAGC CCACTCATAG CCCCGAGCGT GACGAGCGAT GACCTGAGTG
AGGTTGAGGA TGGCGAAGGG GAAGGGGATG AGCAGAGGAG CTTGAGTAAC ATGCCGGGAT
CGTTTGAAGA TGACCGAGGA AAGTACTTGA ATGATCCTTT TTTTGCACCC CAAGATCATG
GCCCGCAATC GCGTTCGTCC CGCTCACCGG GAGGTAAGGA AGGACGACGA GGAAAAGAGG
AGGAAGAAGG CGAGGAGGGG CATGAAGGAG GCGATTCTTA TTCTTATGAT GACGACGCAA
TTTTCGATGA TGACATTCTG GCTGCTGGCG AGATGCAGCA TGTGCCGTTC TAAGGCGAAG
AAAAGAGTTA AAAAGGTTCA TGTAGGTCTC TTAGATTTGT AGATTCATCC TAGGTTACGA
ATGATAGGTG CGTACGTCGA ATCTGAAAAG TTGAAAAGTG GCTGTCTTGT TTGTATCGCT
TTATTATCAC
|
|---|
| Protein sequence | MQYLSKAYNY YSGINPATLS GAIDVIVVRH VDTEGTVTLS SSPFHVRFGK LQVLRAAEKR
VTIRLPNNLP APHVAPFHMK VGETGEAFFV VETDEQVPAD LLTSPVVMPT ESEVPPSPPL
SGEHPPEEEH LESLTQEPFG DTEQKVPHES PLGEVDFLDL NASPPGTPNK RRGDDQQEKH
TAANISNSLT KSSLLGTAST LLPSPLKPSP SKYPDNSPPP PPARQPSIDD GIPNGNDESL
AKQSSHPVVS NTNDEPNPMQ ARPGEKTSLP LRDLKLEKLK SDSHNATASV NATRGEEGLP
KVKAGQGEGP EVVYGKDVVL DMDGYHSSTN ADGSASENEQ DGSVEAFIQD LLASIQPAAL
AMDGRPKPRK SKSADTEVPS SRSDEDEDED EDEDAHTPVE YSPGQGLSSA RQPLPVSNPR
NRPPTRSRLD RGQSEPPQLQ SQDDLSRSPD RGAKAAMEME WDWGRRKPLG GNGEIDEGGS
TSIGRPPLGR LKNVEENPYM FVLEVGKRTH MFELALCEEW GHNSTEASQE AAFIKNRLTF
QTFIESPTVV DDVNIILRYN ELFFTWSTGY RLLYALAMYR RALVPPSASP SSPTLPEMSL
SGLGAGEQRR RSDSRVETGE GTQRQSGYGW SRWWRRGQSS GASAPQGPPS VPGQEPPREP
KTETAPARTT PVPGTPATDV QGQDKEGGVP GGTETEAGTR AGLQGEDEKV LPVEGVKNYA
KTLRLSSEQL QQLHLKPGPN TVQFSVTSSY SGLATCAARI FLWEETDQIV ISDIDGTITK
SDALGHVFAA IGRDWTHLGI AKLYTDIGNN GYKILYLTSR AIGQADTTRE YLKSIAQGQY
RMPEGPVLMS PDRLMASLHR EVIMRKPELF KMACLRDIQR LFGSQAKEAF YAGFGNRITD
AMSYRSVGID TSKIYTIDST GVVRTELLQA AGHRGSYIQL NDLVNEVFPP VSTKFKPEYT
DFNYWRDPVP DIPLPDFSPP SPALSARSDT SGRLSVLGKI AGIGRRSSRA TIGHAHSPSS
ASMSGASASQ IDASSRPSSP LIAPSVTSDD LSEVEDGEGE GDEQRSLSNM PGSFEDDRGK
YLNDPFFAPQ DHGPQSRSSR SPGGKEGRRG KEEEEGEEGH EGGDSYSYDD DAIFDDDILA
AGEMQHVPF
|
|---|
| |