| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CND04580 |
|---|
| Symbol | |
|---|
| ID | 3257248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006686 |
|---|
| Strand | + |
|---|
| Start bp | 1262269 |
|---|
| End bp | 1264686 |
|---|
| Gene Length | 2418 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | 638256394 |
|---|
| Product | chaperone, putative |
|---|
| Protein accession | XP_570099 |
|---|
| Protein GI | 58265886 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACCAC CACATCTCAC AATACCGTCC CCAAAACATG TCAGTTGCAC CCACCAACTT
CACAGGACCA GAAAGCTCAC TTCATCTCAT CCCAGCTGTA TGCTCACCTT TCTAAATATG
TCGTGGGCCA GGAGAGAGCG AAACGCATAC TATCAGTTGC GTTAGTAGAA GATAACATTG
CCGTAAAGGA ATTTGGCAGC TGACAGTGCA AAGCGTTCAC AATCACTACC AGCGCATTGC
ATCCCTACTG CCGCCCGTAA CAGAACAAGA ACCGTCACCT CCCAAACCTC CACGGCCACA
GCCACCACCT ATTATTCTTG AATCCCCTAT CCCTTATCCG CCCACATCTA GCATTTCCTA
CTTTTCAGGG TCACACGCTT CCAATTTCAA GAAAAAGGAG CGCGCTTCAT ACAAGCCATC
GGATCCCGCT TCTTCTCACT GGGATCCTAG CACAGCTGGA ATGTCCCCCC AAGACCCAAC
TATAACACAT GACCTTCTAA CTCTGCGCTC GAGAGAGGGC CAGTGGGGTG AGTAAACCTT
GACCCTTTGG ACAAGTGACA CTGGCTGATT AAATTTAGCG CGTAATGGGT ATTTTGAGCC
ACTCCAGCCA TCCACTCCTC TCCCGACTTT ATCAGGACAG GTAACCAAAC GTCAAAGAGT
TACAAGTGAA CACGATAAAT CACTCTCTAA TGAAAAGACT GCTAAATCCT ACAAGGGCAA
AACCTATGCG ACCCATAACG AATCTATAGG TAATGGATCC GAGACCCCAG AACACGATGA
TACCAGAGTC GTAGAGGGCG AGAGTGTGAT TATTGAGAAA AGCAACGTCC TCATGATGTC
GGTAACTCCT TCCCTTGTTT TCCCTTTGCT GATTTGACTA CAGTGGTCCG ACTGGTACTG
GAAAAACCTT GATGGCCCGA ACGTTGGCTC AGATGCTGAA TGTTCCGTTT GTGTGAGTCC
TTAGTGTAAG CACTAATACC ATTACTGATT GTCGCCTTTT TTCCTATTTG ACTTAGAACT
TGCGATGCCA CTACTTATAC TCAGGCAGGG TGTAAGCTCG GCAGATCAGT GTCTACGCAG
ACCTAGCTGA CGTACTTCAG ATGTTGGGGA AGACGTAGAA AACTGTGTTC TTCGTTTGCT
GCAAGCTGCC AATTACGATG TGGGCAAGGC AGAGTAAGTC AGACTCCTTT CCAGCCGTCT
CTTCCTACTT ACATATACTA TTAGGATCGG CGTCATCCAT ATAGATGAAA TCGATAAAAT
TGCTAAGCGT GGGGGTAGCG ACGTCGGAGG AGGCGGGCGC GATGTAGGGG GGGAGGGTGT
ACAGCAAGCC CTCCTCCGCT TGTTGGAAGG CACATCACTA ACGCTATCCG CAAAAGCCCC
AGCAATTTCA TCTTCCACTC ACAATTCTTC CGTTTCTCCA TTTCCACCCC CACTTGGAGG
AGGCATGGGA TCAGGAAGTC CTTCCAATAC ACCGAAAGCA ACTAATCGAG CGGTATTTGG
AGACCCTCCT GGATGGGATT TCAACAATTC TTCAAACAAA GGGCTTGGAG GAAAGCGGAG
TGTGAGGGAA GGCCTACCTG GATATAATAG CAATGGGGGC GGAACTCCTG GTTTGTCTAT
GGTTCAAAAC TCACTGTGAA GTATGGCTGA CTTCGTGCAG CTAAAGGTGA TACTTTCGTT
GTAGATACTT CTAATATCCT TTTTGTTCTA TCTGGAGCAT TTGTTGGTTT GGAACAGATT
ATCAACCGCC GCATTGGCAA GGGTGTAGGT GTAGTCTCAA CTGTACCTGC TGTATTATCG
TTGATACTTT TACAGTCAAT TGGTTTTGGC GCTCCCCTTC CTCAATTAAC CACCGACTTT
TCTAACCAAT CTTCGCCCTT GAAAGGACTT TCAACTGTCG ATCTTACCAA TTACGGTCTT
ATTCCGGAAT TCCTGGGTCG TCTTCCCATC CTCTCTACAC TCCATCCGTT ATCAATCGAT
GACATGGTTC GTATTCTTGC TGAACCGAAT AATGCTCTAT TGAAGCAATA TATCAAGTTG
TTTGAAAACT ATGGCAGTGA GTTGTGTTTC ACCGACAAGG CTGTAAGGGA GATAGCCCGG
GAGGGGCTCG ATAGAGGTGG GGGCGCCAGA GGTTTGAGAG GAGTCTTAGA GGAAGTCCTT
CTAGACGCCA TGTTTGAGGT ACCTGGATCT GTACGTGATT CTTGTGTGAC AGCGGCTCTG
GAACTGACCA TCAATCCAAT GAGAAGTCTG TGAGGTATTG CCTAATAACA GAGGCCGTGG
TTCGTAAGGA CTGCGCGGCT CATTATTTCT CTCGCGGACA GAATGTAGCA TTTTTGGAAG
CGATTGAGAG AGAACGGTTG CCTTGAGGAA TTAAGGCATA TCAATGAGTA AAGGAGGTTC
CGCGTGTAGA AGATTAGA
|
|---|
| Protein sequence | MPPPHLTIPS PKHLYAHLSK YVVGQERAKR ILSVAVHNHY QRIASLLPPV TEQEPSPPKP
PRPQPPPIIL ESPIPYPPTS SISYFSGSHA SNFKKKERAS YKPSDPASSH WDPSTAGMSP
QDPTITHDLL TLRSREGQWA RNGYFEPLQP STPLPTLSGQ VTKRQRVTSE HDKSLSNEKT
AKSYKGKTYA THNESIGNGS ETPEHDDTRV VEGESVIIEK SNVLMIGPTG TGKTLMARTL
AQMLNVPFVT CDATTYTQAG YVGEDVENCV LRLLQAANYD VGKAEIGVIH IDEIDKIAKR
GGSDVGGGGR DVGGEGVQQA LLRLLEGTSL TLSAKAPAIS SSTHNSSVSP FPPPLGGGMG
SGSPSNTPKA TNRAVFGDPP GWDFNNSSNK GLGGKRSVRE GLPGYNSNGG GTPAKGDTFV
VDTSNILFVL SGAFVGLEQI INRRIGKGVG VVSTVPAVLS LILLQSIGFG APLPQLTTDF
SNQSSPLKGL STVDLTNYGL IPEFLGRLPI LSTLHPLSID DMVRILAEPN NALLKQYIKL
FENYGSELCF TDKAVREIAR EGLDRGGGAR GLRGVLEEVL LDAMFEVPGS SVRYCLITEA
VVRKDCAAHY FSRGQNVAFL EAIERERLP
|
|---|
| |