| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CND04530 |
|---|
| Symbol | |
|---|
| ID | 3257118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006686 |
|---|
| Strand | - |
|---|
| Start bp | 1244986 |
|---|
| End bp | 1248625 |
|---|
| Gene Length | 3640 bp |
|---|
| Protein Length | 996 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638256388 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | XP_570104 |
|---|
| Protein GI | 58265896 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5535] DNA repair protein RAD4 |
|---|
| TIGRFAM ID | [TIGR00605] DNA repair protein rad4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.008171 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AGCTCGCTTA CCCGTACCAT AACAGATGAG CGCTTCCAGA CCGAAATCTT CAAGAGTCAT
TCAAAAACCA CGAGGAATAT CAGCTCTCGC CGCTAGGATC CCCACTTCAG AATCCACAAA
GCAACAGTCC AATGTCGGTG GCAAACGTAA AGCCCCGACT CCTGCGACCC GCAAAGGTGT
GTGCTCTATA TCATCTCGCT CCCTGATTCT GTTTATATAC TAAGTGGCGA TAGGCACCCG
ACCTGCCTCC CCGATATCAG TTGCTTCGAC AGTTTTATCT GTGTCAGATA ATGATGAGGA
TGATGAAGAT GAGCTCGAAG AAGTTCCTAT ACCTATTGTT TCTAACGAAG TCCAAGGCGG
TGACGAGGAC GAAGACGAAC AAGATGGTGA GGATGAAGAG AGTGAAGATG ACGATGGCGT
AATTCATCTG GAGATTGGTG GAGAAACTGC GGAAGAGAAG GCAAAGCGCA TGGTTTTGGC
TAAGAGGAAA AAACCATTGA CAGCAAGAGA TAGAGCACTG AGGTTAGAGG TCCACAAAGT
GCATGTTATA GCTCTATTGG CTAGTGCCAG CGTAAGGAAT AAGTGGTGTA ACAACTCCCT
CTTAAAAGTA GGTAATCAAG GCCACAAAGA ATTTGTCTAA CATCATGCAG GCCCGTTTGC
TCTCTCTACT GCCGCATCCG CTACAAGCAG CTTTCAACAT TCCTCCTTCC CGCTTCCCTG
ATCGTGCACA ACGCTCTCGC CTATTTTTCG AGGCTTTACA GTCTCTGGTC ACGTGGTGGT
CTCAGACATT TTTCGATGTG TCGGACTATG CTCTAGGCTT GCGAACTCGT CCTTGGGACG
AAGTCCAAGG CATTATAGAG TCAATATCCA AAGTACATAC TCCCTTTAGC CGGTCGCCTT
CGGGTCATGG TGACGGCGAA AAGATCAATA AAGCTGCAAG CAAGGGAAAA GGCAAAGCTG
CTGCAAGTGA AGAACTGTCA GAGCAACTTG CCTTTGGATC GGGTGCGGAG CGTCTTCGAT
CGGTCAATAG CCTTATGAAG AAAGCGTTAC AGCAAGAAGG ATCTCGGGAT GTTTCTGCTC
AACTATTTGT AGCTCTTGCT CGGGCATGTG GGCTAGGTGT CAGACTTGTT ACCTCACTTC
AGGCAGTGCC ATGGAGAGCA GAAAAGGGTG CGACTAAGAA GAAGGCTGTA GGAGCTGGTA
GAGGAGGCAG AACGTTAGCG AGCAGGCAGG GTTTAGGAGA TGAAGATGAG GATGACGACG
AGGATGAAAT GGAAGAAGTT CGCATACCAG ATGACGTGGG AAGATCCGTA GGAGGGGCTA
AGAATAATTC ACGAGAAGCT GGCAGTAGGC GATTGAAAGA TCCAGCAGAT CTCTATAGAC
TACGAAAATA CAAGCCTCCG GCTCGAAAGA TTGGGTCGCC AACTAAATCC AAGCCGAAGG
CAAGTCAGAG TGAGTTGTGA ATTGCCCGTG GTTTTCTTTA TTTTATCTGA CCATATATAG
GCCTTGCGGA CCAGCCGCCT GTCTTTTGGG CAGAAGTGTT CAATAGATCG GACCAACGTT
GGATACCTGT CGACCCTGTG AGAGGCATTA TCCGAAAGAA ACGCGACTAT GAGCCGCCAA
CGGACAGCGG GCCGGTTAGA ATGCTGTATG TTGTTGCTTT CGAGGAAGGT AAAGATATCG
TTCCCGTACA ATGCGTATTT TTCTGCTAAT GGTTGCGTAG ACGGTTACGC CCGAGACGTG
ACCCTTCGAT ATACCAAAAA CTTCTATGCT AAAACCAGTA AATTACGAGT CCCTGCGAAA
CCAAACGAGC CTCAGTGGTG GAGTGATATA GTTATGGGTT TCCTACGGAG ACCGTATCAT
TTAGTGAGAA TTTCTGTTTT CGACTATAAC AAATGCTAAT GTATTCCACA GAACCGAGAC
GATATGGAAG ATGCAGAGCT CGAGATGAGT CAGATGACAG AGGGTATGCC AATGCATATG
AGTGGCTTCA AGGATCACCC AATGTGAGTA TGCTGTAGCC CATAGTATTA CCTATGCTCA
TACTTGCATC AGTTATGTTC TTGAACGCCA CCTCAAGCGG GATCAAGTGC TTAACACTGC
CAATCCCGTA GGTCGCTTCA AAGGTGAAGC AGTTTTTCGT CGTTCTTCAG TTCAGAACTG
TAAAACGGCT GAGAACTGGA TGCGTTCTGG GCGCAAAATA AAAGAAGGGC AAGAGCCCCT
GAAGTGGGTC AAACAGAGAG CCGTGACGCT ACAAAAGCGA AGAGCGCAGG AGCTGGCAAA
GCAGGAAGGC GAGGAAGTAA CTCAAGGACT GTATGCGGAG TGGCAAACAG AGATTTACAG
GCCTCCGCCC ATTAGAGATG TGAGTTCTAT CAAGATCATC ACAGATTGAA GATTTCTAAC
GCCATGTAGG GCATAATACC GAGAAATTCG TTTGGCAATA TTGACCTCTA TGCACCAACT
ATGCTGCCCC TCGGTGCAGT CCATCTACCT TGTATGTACT CGATGAACTC TGTTTACTCA
GTGTTATGCT GATGACCATA TAAGACAAGG GTATTGCCAA AGTTGCCAAA GGCCTCGGAG
TAAGCTATGC AGAAGCTTGC GTAAGTTTTT ATTAGGTCTT GTTCTTGTCA GTAGTACTGA
AATTGCCTTA AGACTGGTTT CGAATTCAAG AAGCAACGAG CGGTGCCTAT CATTAAAGGC
ATCGTAGTAG CAGCTGAAAA GAAACAAGAA GTCCTTGATG CCTACGAAGA ATCTACCATC
GCTGCTGAAG AGCGCGAACG TATGAAGCGG GAAGATCGCG CTTTGAAACG CTGGTCCAAG
CTTGTCAACG GTCTCAGGCT TCGTCTACGT CTTCAGCAAG AGTATGGCTC GAAGGACAAG
GTGAATGAGA CACCTTCGAA TCTTTTCGAA GGAGCCGGGG ATGAGGGCGA AATGCGAATA
AATCTCCGGG GAAAGAGTGC AAGAGAACTT TTGGCAGCTG CGCAGCATCA GAGCACCAAA
GATTGGGAAG AGAGAGTTCG GAGAGAAGAT ATCAGCATGG AGGAGGAGGA TGGTATGATG
CCTGCCATGG CCGTTGAGCG CGAGTCAAAT CAGATTCTAC TGGGCGATTT CCGCGCTCCT
AGTAGTGCCA TTTCGGAAGT CACTAACGTC ACTCCCTCGG CGGAAACACC GAGGATCATG
CTTCGATTTA AAAACACCTC CTCTCCACAA TCAGCCGCTC ACGCCGCTTC CGAAAGTCGA
AGTGGACTCA CTTCTTCTCA AAAGAGGAAA GCGATGATTT CGGGGACGAT TGAAGCTGTT
GACGATGAAC AGTTTGAGGA TCCACGGACA ACAAAAGGGG ACAAAACGAT GGCATTACCG
GAGCCTGTGG CGAGTACGAC TAATATGCGG ACGTTGAGGA GCACAAGAGC GAGGACAAGA
GAGCAAATGA AGGCCAACCA GGCAAGGGAG GATAAAATCA GACAAGCTTA GAAGAGTGAC
ACTGAAAATG ATATATAATA ATGTTGATTT ATAATAATGT TGATATATAA TAGTGTTGAT
ATAAACATTT AACTTGGCGA AAGCTCAGCT TTTATGTCGT GGTTAGTGTA AAGGGATTAA
TGGGTATTAG TTTGGCAGAT TCACATTTAC ATGGCTATTA
|
|---|
| Protein sequence | MSASRPKSSR VIQKPRGISA LAARIPTSES TKQQSNVGGK RKAPTPATRK GTRPASPISV
ASTVLSVSDN DEDDEDELEE VPIPIVSNEV QGGDEDEDEQ DGEDEESEDD DGVIHLEIGG
ETAEEKAKRM VLAKRKKPLT ARDRALRLEV HKVHVIALLA SASVRNKWCN NSLLKARLLS
LLPHPLQAAF NIPPSRFPDR AQRSRLFFEA LQSLVTWWSQ TFFDVSDYAL GLRTRPWDEV
QGIIESISKV HTPFSRSPSG HGDGEKINKA ASKGKGKAAA SEELSEQLAF GSGAERLRSV
NSLMKKALQQ EGSRDVSAQL FVALARACGL GVRLVTSLQA VPWRAEKGAT KKKAVGAGRG
GRTLASRQGL GDEDEDDDED EMEEVRIPDD VGRSVGGAKN NSREAGSRRL KDPADLYRLR
KYKPPARKIG SPTKSKPKAS QSLADQPPVF WAEVFNRSDQ RWIPVDPVRG IIRKKRDYEP
PTDSGPVRML YVVAFEEDGY ARDVTLRYTK NFYAKTSKLR VPAKPNEPQW WSDIVMGFLR
RPYHLNRDDM EDAELEMSQM TEGMPMHMSG FKDHPIYVLE RHLKRDQVLN TANPVGRFKG
EAVFRRSSVQ NCKTAENWMR SGRKIKEGQE PLKWVKQRAV TLQKRRAQEL AKQEGEEVTQ
GLYAEWQTEI YRPPPIRDGI IPRNSFGNID LYAPTMLPLG AVHLPYKGIA KVAKGLGVSY
AEACTGFEFK KQRAVPIIKG IVVAAEKKQE VLDAYEESTI AAEERERMKR EDRALKRWSK
LVNGLRLRLR LQQEYGSKDK VNETPSNLFE GAGDEGEMRI NLRGKSAREL LAAAQHQSTK
DWEERVRRED ISMEEEDGMM PAMAVERESN QILLGDFRAP SSAISEVTNV TPSAETPRIM
LRFKNTSSPQ SAAHAASESR SGLTSSQKRK AMISGTIEAV DDEQFEDPRT TKGDKTMALP
EPVASTTNMR TLRSTRARTR EQMKANQARE DKIRQA
|
|---|
| |