Gene CND04120 details

Gene Information

• Locus tag: CND04120
• ID: 3257040
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006686
• Strand: +
• Start bp: 1141992
• End bp: 1145564
• Gene Length: 3573 bp
• Protein Length: 902 aa
• GC content: 51%
• IMG OID: 638256347
• Product: Pol II transcription elongation factor, putative
• Protein accession: XP_570584
• Protein GI: 58266856
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG0553] Superfamily II DNA/RNA helicases, SNF2 family

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGCGA GACGCCTCCG CCCAGTGATC GAGCTCGCGC CCCTCCCCCC CGCCGTCCGC 
GCCCTCTACG CCCGTCCCCC CTCCGCTGCG CCCGCCCACA CGCAGCACCG CACAGTGAGC 
CGCCCCCACC CGCCTCCACC CGCGATTCAC CACTCACCAC TCCCAGTTCT GCGAAAAATG 
CCGCCGGCCG CCCGCAGCCC TCATCCTCGA ATCCCTGCAC AGCCGTCCCA AGAAACGCCC 
CAGAACGAAG AGGCCGTCCC CGGAAGACGA CGATCTGCTG AGTGACAGCG AGCTCGTCCA 
TATCCTTCAG GGCTGGGTCA CCGTGAGCCC GCCCAGCTTT TCCAGAGAGC GCAGATACTA 
AGCACAATCC CATAGTGCAG ACGGTGTGTC GTCGCCTCCC ACTATGGCTG TCTGTCGGCC 
AGCCAGAAGA AGGCAGTCCT CGAGTCACTC CGCTCGCAAG ACCTGGCTGC GCTTGGAAAC 
ATTGACCCTA CCACGCAGGC ATCAGACGTT CCTCTCCGGA AGACTGTGCC TATTCAACAA 
GAGGCGGACT TTCTGTGCGC GAAATGCGGC GAAGGAGTAC CCTGTTTTGT TTGCTGCAAA 
GACGAACTTC TAAACGTGGA TCCAGTCACA GTGGGCCGGA GAAAAGACGA TGACGCCGGG 
GTAGTGGACG TTGGCAAAGA GGACAGCATG ACGGACATGG ATTCATCAAA GGCCCCCCAG 
CTTCCACCCT TGGCGGAGGC AGTCTCTGAC AAGGAAATCG GTTCACCACA GCCCAAAAGC 
ACTCGACCTC TTTTCAGGTG TTTGCGATGC AGACAAGCAG CTCATTATGA ACACTGCAAG 
TAGCTCGGAT TGTTCCCCGC ACGACTGGCC ACTAATGTCT AATGTCTATT TGACGTACAG 
TAAAAGTTCC TGAACCGCTT GGCGAAAACC CAGACCTGGC AGAGATAGCA CACCACTATC 
AGACTCAAAC GGACGACGGT GATGCCTGGA CGTGCCATCA ATGTCGTGCA TCACCATGGG 
GTATTGATAT CGTGCGTCAT TCTTTCGCTT CGCAGGTCAC ACCTTGCGAG ACCCTCTTCT 
TATGATGCAA CCCGACGTAG GTGATCGCAT GGCGTCCTCT CCCTGCCACA TCTCCTTTCC 
ACTCTTTGCC CCCTCCTCCA CCCAAAACTC CACTATACAA GACCGTCCTC CCCAGAGAAT 
ATCTCATCAA ATACTCCTCT CGATCGTTCC GCCATGTCGA ATGGGTTCCC CACGCCTGGC 
TCTCCGGCAT CGCCCCTATG AAACTCCGAC GATTCCTGGA AAAAGGGCCC CTACTGGACT 
TGGTAACAGA TGAGACATTA GAAGCCAGAG GTGATGAAGT GGTCAGGCCT AGTATCGCGG 
ACATTGATAA CCGTGCTCAC GGAAAAGATG TACATCATGA AAAAGGGGTG GGGCTGATAG 
TAGATGCGGA AGAGGATGCG GAGAGTGGTT TGCCCATTTT ATGGAGTGTA AGCGGTTTGC 
CATGATCGAA CAAGGCTGTT ATAAAAAAGC TGACAGCTGG GTGAATAAGA CAATTGACAG 
AGTCTTGGAT GTCTTGCTGA TTCGACCTAC CGCTGCCCAA ATCAAGGGGA AGAGCAAAAA 
GTCTCAATCA GGAAATGACA GGCGGAATCA GCGACGTATC GTCTCTCTGT CTCCTTCTCC 
ATATGACGGT GCCGCCCCAT TTCCACCCGA TTCCAGTCCC AATGCACAAG CAGTAGCTGT 
CAAGACGCCT TTTGAACAGC TTCAGGCAGA TCTCAACATC CCGGACGGCC TTCCATTACC 
TGACGACGAG CTCATCGAAA TTGAGGAATG GGAAATACTT ACGGGAAGAA GGCTGCTCGA 
GACAGATGTA GAGGAAGTCG CAGGATTGGT AGGATGGGGC CTGTTCAAAT GGCAAGATTT 
GCAGTATGAT CAAGGTAAGA CAACCCGGTG TAACTTTTGG CGAACGAACT TGCAAAGCTC 
ACCCGCGGAC CGAAAAAGCA TGCTGGGATA CACCTCCACC TTCGTCATCA CCGCTTTACA 
CTGCTTATAA GCACGGTCTT TCCAAATACC TTGCAGCCCG GCACATCACC ATCCCCGTCC 
TGACCCCAGC CCAAATTCGC GCCAGGGATA ATGATCCCGC AAGGGGCTTT GTGCCCCCGC 
AAGAACAGCC GGATTGCATC GCCGGGGGCA ATTTGATGCC CTTCCAGATG GAAGGGTTCC 
AGTGGTTGTT GTACAAATAT TTCAAAAGAG AGAGCTGTAT TCTGGCGGAT GATATGGGTT 
TGGGCAAGAC GTAGGTGGTG TTTGCACAAG ATGGTGGCGC CCGTGCTGAT GGGTTGTTTG 
CTTTCTTGTT TATACTTGCA GTGTGCAGAT CGCCTCTGTC TTGGGTTATC TGGGCTCTGC 
CGAACATGAG ATCTATCCCT GTCTAGTAGT CGTGCCGAAT TCGTACGTGT GGCAAGACAA 
AAACGTGGAA TCTGAGGCGG GTAGCGTCAT ATACTGACAA ATATGGTTGC TATCGCTAGA 
ACAATCACCA ATTGGGTCAG AGAGTTTGAA AAGTGGAGTC CGCACTTACG AGTTGTGAGT 
TTTTTTTTTT TTTTTTTTCT TTGCGTTCTG TGACACTCCA CCTGTTCTAT GGCTGATAAA 
TCGCGCCTAG GTTCCCTTCT ATGGTGAAGC GGCTTGTAAG TGTTTCCCTC CTTTCAATGA 
AAACTAGAGA GTTTAATCCT TGCTGATGGC CATCATTAGC ACGCGAGATT ATTTCAAAGT 
ATGAATTATT TCATAAAGGG ACGCAAGGTA AACCAGTGGG CCTCAAAGCG TGAGTCTGTC 
GATCACACTC TTCCAAAAAA AAGAAAGAAA AAGCTGCTGA CTGGCAAGCA CCCGGATCAG 
CCACATCGTC TTGACAACAT ATGATATGAT AACTTCTTCA GAATTTCGTG TTTTCTCTGC 
CATCCCTCGA TGGGAGGTGC TATGCGTGGA CGAGGGGCAG CGACGTAAGA TAATAACCGT 
TCTTTTCTGC ATTTTTGCCT CACCACGCTA AATGTTTATC AGTCAAATCT GATAATAGTA 
AAATATTCAA CAACCTCAAA ACTCTCAACT CTGTGCACCG AATACTTCTC ACGGGCACGC 
CGCTGAACAA CAATATCCGT GAACTATTCA ACCTGCTCAA TTTCTTGGAT CAAGATAATT 
TCAAAGACTT GGAATCTATG GAGCAGGAAT ACTCAGACTT GAATGAGGTC AAAGTGCAAA 
AGCTGCACCA GATGATTAAA CCATACATCC TTCGAAGGAT CAAGGCCGAT GTGCTCAATC 
TACCGCCAAA GGTAAGTTCC ATCCATATCA CACAATTACT TTTTTGTCAT TTGACCAGAT 
GTTGAATCCC CTCGGCAGGT CGAAATTATC GTCCCCATCT CACTCGCCCC CTTGCAGAAG 
CAAATGTACA AAGGTATATT CGAAAACCAT GCCGGGATAA TCGAAGACAT TCTCAAAGCG 
AGGCAAAAAA GGCGACAGGC AATAAAGTCT GTTCAGTCCG CAGTGCCAAC CAATTAGTCG 
AGCATAATTA TAATGGAAAG GGTCGGGATA ACA 

 

Protein sequence

MPARRLRPVI ELAPLPPAVR ALYARPPSAA PAHTQHRTFC EKCRRPPAAL ILESLHSRPK 
KRPRTKRPSP EDDDLLSDSE LVHILQGWVT CRRCVVASHY GCLSASQKKA VLESLRSQDL 
AALGNIDPTT QASDVPLRKT VPIQQEADFL CAKCGEGVPC FVCCKDELLN VDPVTVGRRK 
DDDAGVVDVG KEDSMTDMDS SKAPQLPPLA EAVSDKEIGS PQPKSTRPLF RCLRCRQAAH 
YEHLKVPEPL GENPDLAEIA HHYQTQTDDG DAWTCHQCRA SPWGIDIVIA WRPLPATSPF 
HSLPPPPPKT PLYKTVLPRE YLIKYSSRSF RHVEWVPHAW LSGIAPMKLR RFLEKGPLLD 
LVTDETLEAR GDEVVRPSIA DIDNRAHGKD VHHEKGVGLI VDAEEDAESG LPILWSTIDR 
VLDVLLIRPT AAQIKGKSKK SQSGNDRRNQ RRIVSLSPSP YDGAAPFPPD SSPNAQAVAV 
KTPFEQLQAD LNIPDGLPLP DDELIEIEEW EILTGRRLLE TDVEEVAGLV GWGLFKWQDL 
QYDQAHPRTE KACWDTPPPS SSPLYTAYKH GLSKYLAARH ITIPVLTPAQ IRARDNDPAR 
GFVPPQEQPD CIAGGNLMPF QMEGFQWLLY KYFKRESCIL ADDMGLGKTV QIASVLGYLG 
SAEHEIYPCL VVVPNSTITN WVREFEKWSP HLRVVPFYGE AASREIISKY ELFHKGTQGK 
PVGLKAHIVL TTYDMITSSE FRVFSAIPRW EVLCVDEGQR LKSDNSKIFN NLKTLNSVHR 
ILLTGTPLNN NIRELFNLLN FLDQDNFKDL ESMEQEYSDL NEVKVQKLHQ MIKPYILRRI 
KADVLNLPPK VEIIVPISLA PLQKQMYKGI FENHAGIIED ILKARQKRRQ AIKSVQSAVP 
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