Gene CND02940 details

Gene Information

• Locus tag: CND02940
• ID: 3256924
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006686
• Strand: +
• Start bp: 797479
• End bp: 799470
• Gene Length: 1992 bp
• Protein Length: 503 aa
• GC content: 48%
• IMG OID: 638256228
• Product: centromere/microtubule binding protein cbf5, putative
• Protein accession: XP_570199
• Protein GI: 58266086
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0130] Pseudouridine synthase
• TIGRFAM ID: [TIGR00425] rRNA pseudouridine synthase, putative; [TIGR00431] tRNA pseudouridine 55 synthase; [TIGR00451] uncharacterized domain 2

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.701159
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTGGGTCTCA CGGGCACTTC CATATACCTC AAAATAACAA TAAAAATGGC TGTTGCCAGC 
TCATCCACCC TCACTGACAG CCAGGTCAGC AAGATCCAGC AAGATTCCGA CTTCTCCATC 
AAGAGCGAGT CCGTCACCCC CAAGCTCGGT ACGCATCTCC CCTCCTTTTC AGAGAGTGGG 
GCTAATGTTT GGCAGACACT TCTCAATGGC CTCTTTTGCT TAAGAACTAC GATAAGTTGC 
TTGTTCGATC TTCTCATTTT ACTCCAATCC CCTCCGTGAG CATATTTTCG CTTTTTATTC 
AAGGCCTAAC TAAACATCAT TCAACTAGGG TATCTCACCT CTCAAACGCG ACCTCCAAAC 
TTATGTCAAG TCTGGTGTCA TTAACCTCGA CAAGCCTTCC AACCCGTCTT CTCACGAAGT 
TGTTGCTTGG TTGAAGCGAA TTCTGCGAGT CGAGAAGACC GGCCACTCAG GTACCCTTGA 
TCCCAAGGTC ACTGGTTGTT TGATTGTCTG TATCGACAGA GCTACTCGAC TGGTCAAGTC 
CCAGCAAGGT GCAGGAAAGG AATACGTGTG TGTGGTTCGA TTCCACGACA AGTTGCAGGA 
CGAAAAGGCT TTGCCTCGAG CTTTGGAGAC CCTCACTGGC GCCCTTTTCC AACGACCGCC 
CCTCATCTCC GCCGTCAAGC GTCAGCTTCG TGTTCGAACA ATCTACGAGT CCAAGTTGAT 
TGAATACGAC AATGAAAGAA ACCTTGGTGT ATTTTGGGTG TCTTGTGAGG CTGGTACTTA 
TATTAGGACT CTGTGTGTCC ACTTGGGATT GCTCTTGGGT GTCGGTGCCC ACATGCAAGA 
ACTCAGACGT GTAAGGAGTG GTATCACTGG CGAGAATGAT GACATCGTGT CTATGCACGA 
TGTATTGGAT GCCCAGTGGT TGTACGATAA CACTCGTGAC GGTGAGTCCT TTTTTTATCC 
TTATTTTGTA TGTGCTCATA CGAGGATTTA GAATCCTACC TTCGTCGAGT GATTCGCCCT 
CTTGAGTCTC TTCTCGTCAA TTACAAGCGT ATCGTCGTTA AAGATTCCGC CGTCAACGCC 
ATTTGCTATG GTGCCAAGCT CATGATTCCA GGTCTTTTGC GATACGAAGC AGACATTGAA 
GTCAATGAAG AGGTTGTTCT CATGACCACA AAGGGTGAGG CTATCGCCAT TGGTATCGCC 
CAAATGTCCA CTGTCGACCT TGCCTCTTGC GATCATGGTG TGGTAGCCAA GGTGAAGAGA 
TGCATCATGA ACAGGGATCT TTACCCTAGG AAGTGGGGAC TTGGTCCCAA GGCTCAAGAA 
AAGAAGAAGA TGATCAAGAA GGGAGAGTTG GACAAGTATG GCAAGCCTAT CGAAGGTGTT 
ACCCCTCAAC AATGGTCCTC GGGTTATATT GACTACAATG ACCCTGATGC TGTGCCTGCT 
TCTGGATCCA ACGATCTCTT GCCCACCCAA CCTCCCACTG CAGAAGATGT GAAGATGGAG 
CCGGTCGAGG TCAAGGTTGA GGCGGACGAG AAAAAGCGCA AGCGCGAGGA AGAGGAAGTT 
GGATCACCAA AGGCTGAGGA GAAGAAGAAA AAGAAGAAGG TGAAGACTGA GGATGGTGCG 
GAGCGAGAGG AAACTGCTGA GGAGAGGGCG GCAAGGAAAG CTGCCAAGAA GGAGAAGAAG 
GAGAAAAAGA AGGCGAAGGA GGAGTAGGTC TGGGTTTTTT GCGTCTTATA GAGGGCTCTT 
GGATTCTGTA TGTACCGTAT CTGCATTTCA ACATCCCATA CCATTGCCTA TATGCCTACA 
GTAGTTCATC TACAATACTC ATTGCTTACT CAGTGCCAAT CAATTCTCAA TTCCCTGTCA 
ATCTCTCCGA AACCTTGGAA AAAAATCTTG AAGAAGTTGA TATAATGCCT GACATCGTGG 
CTACCCGCTG TCTCCCTAAT GGAGTGCATG GACAGTTGGG CGAGACCAAT GTCAACCGTG 
CGGACGTGTG TA 

 

Protein sequence

MAVASSSTLT DSQVSKIQQD SDFSIKSESV TPKLDTSQWP LLLKNYDKLL VRSSHFTPIP 
SGISPLKRDL QTYVKSGVIN LDKPSNPSSH EVVAWLKRIL RVEKTGHSGT LDPKVTGCLI 
VCIDRATRLV KSQQGAGKEY VCVVRFHDKL QDEKALPRAL ETLTGALFQR PPLISAVKRQ 
LRVRTIYESK LIEYDNERNL GVFWVSCEAG TYIRTLCVHL GLLLGVGAHM QELRRVRSGI 
TGENDDIVSM HDVLDAQWLY DNTRDESYLR RVIRPLESLL VNYKRIVVKD SAVNAICYGA 
KLMIPGLLRY EADIEVNEEV VLMTTKGEAI AIGIAQMSTV DLASCDHGVV AKVKRCIMNR 
DLYPRKWGLG PKAQEKKKMI KKGELDKYGK PIEGVTPQQW SSGYIDYNDP DAVPASGSND 
LLPTQPPTAE DVKMEPVEVK VEADEKKRKR EEEEVGSPKA EEKKKKKKVK TEDGAEREET 
AEERAARKAA KKEKKEKKKA KEE