Gene CND02880 details

Gene Information

• Locus tag: CND02880
• ID: 3257032
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006686
• Strand: +
• Start bp: 778626
• End bp: 780830
• Gene Length: 2205 bp
• Protein Length: 546 aa
• GC content: 51%
• IMG OID: 638256222
• Product: splicing factor SF1, putative
• Protein accession: XP_570209
• Protein GI: 58266106
• COG category: [A] RNA processing and modification
• COG ID: [COG5176] Splicing factor (branch point binding protein)

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.798484
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTCATAACA TAAAAAACAC CAATGTGGAG ACCAGCTGCA AAGACAACCG GCACGAACGA 
CGTGAGTTAT ACAACCTCAT TACCCCGCCA AGCTCACACT CAGCAGGTCC CTCTCGCAAA 
CAAGCGACGC TTCGGTCTCC CCGAAGAAGG TCCTCCCTCT AATTCACCTT CCTACGCACC 
TCGTCCTGCT GCCGATATTC AGTATTTCAA CGGCCGACAA GAGCGCGAAC GTGATGCTCG 
GGATGACAGA GAGAGGCCAA GGGATGATTA CGACAGAAGG AGGGATGATT ATGTGCGAGA 
CGATAGGGAC AGAAGATATG ACGACTACCC TAGGGATGGA CACAGTGACA GACGAGACGA 
GAGGTCGAAG TGGGATGAAG GGGATAGGAG AGAGGCTCCC AGAGGCCGTG AGCGTTCTAG 
GGATCGAGGA GACTCAAATG AAGGTACGTC GTTTTTCGTC TTAATTTGCC GTCCGTACTG 
CTGACTCACC CGACGCAGAT GGCCCGCGGA AGCGTCGATC TCGATGGGGC GACGCTTCAG 
CCAAAGTCAA TGTTCCTGGA ATGCCTGTCG CTGTCATGGG TAATGTTTCT CAGACAGAAC 
TTGACAATTA TGCTATTCAC GTCCGTCTCG AGGAGATCAA TCGCAAACTG AGGACCGGTG 
ATGTCGTACC CCCCGAGGGT CAGCGTTCTC CATCTCCAAC TCCTCAATAC GATGCCTACG 
GACGCAGGAC CAATACAAGG GAATTGAGAT ATCGCAAGAA ACTGGAAGAT GAGCGTACGA 
GATTAATTGA TCGAGCGGTC AAGTCAGACC CCAATTTCCG ACCCCCTGTG GACTTCCAGC 
ATAAACGAGG TTCTCGACCT CAAGACAAAG TCTACATTCC TGTCAAAGAA TTCCCTGAGA 
TCAACTTTTT CGGTTTGCTC GTTGGTCCTC GTGGTAATTC TCTCAAAAAG ATGGAAAGGG 
AAAGCGGTGC CAAAATCAGC ATCCGGGGTA AGGGAAGCGT CAAGGAGGGT AAGGGAAGGG 
CCGGTAACTT CCCCCAGGAT GAGGAGGATG AATTGCACTG TTTGATCACC GCCGACGATG 
AGAGCAAGGT CAAGACTTGT GTCGCCCTGA TCAACAAGGT TATAGAAACT GTGAGTATTT 
TTTTGAAGCC AAATTGTATT GTAAACTGAT TCGATGCTCA AGGCTGCGTC CACCCCTGAA 
GGCGAAAATG ATCATAAGCG AAACCAGCTT CGAGAATTGG CTTCGCTTAA CGGTACTCTT 
CGAGACGACG AAAACCAGCT TTGCCAAAAC TGTGGCGAAA AAGGCCACAG GCGTTGGGAA 
TGCCCACAAC AGAGAGTGTA TAGCGCCAAT GTCATCTGTC GTATTTGTGG CGGAGGTACG 
TCGTATTCTT ATTTCTTCAA TCCAGCCCGT TTCTCATTGT CTTTTAGCCG GCCATATGGC 
ACGAGATTGC CGCGGTCGTG GTGATCCAAG CCTTACTCAG AATAAACAAA CTGCTTTCGA 
TTCAGAGTAC ACTGCACTTA TGGCAGAGCT CGGCGAAGGT GGTGGATCCA CGCCAGGCTC 
CGCTCCTGCT GCTGCCATTG GCGCTCCTGG TGCTATTCCA CCCCAGAGTA GGGTCCCCCC 
TTGGAGGCTT CCCGAAAATT GGCAGACCAG TATGTTATCG TCCACCATTT TTTATGTGTC 
TTACTAACCT TGGGATAGAC TCTGGTGGTT TCCGTGGTCC CCCCAATTTC CAAGCTCAGG 
GCTACCAGCA AGCCGCCCCA GGTGCTGCTG CCTACGGTCA ACAAGCTTAC CCGGGTTACG 
CCGGTTACCA GACTGGCGCC GTGAGTGGAT ATGGAAGTCC CGCCACCGGT GGTGCTGACG 
CCTATGCCGC GTAAGTGTTT TGACAAGCGT AAGAGCGTCT TTAAGCTGAC ACCTGATAGG 
TACTATGCCT CTATGGGGCA ACAAGCTCCT GCCGCTGCTG TCTGAGTTTC CTAACAATGA 
TTCGATAGCA GAGAGTTTGT TTACTCATGA TGTGATCTCA AACTGAGGCA GAGCGGCCCA 
GGAAAATGAC GACAGAGTAT TGAGGAAAAC CTGAAGAAAA GTTTTTGCAA TTGTGACTGA 
ACATACTTAT ACCCTTCTTT ATCCAGCGAT TTGTATATAC ATGACCCAGG TGACTGGGAG 
TGTGGGCGGC ACTTGTCTGG CGCGAAACTG ATGTATTGAC TCCTC 

 

Protein sequence

MWRPAAKTTG TNDVPLANKR RFGLPEEGPP SNSPSYAPRP AADIQYFNGR QERERDARDD 
RERPRDDYDR RRDDYVRDDR DRRYDDYPRD GHSDRRDERS KWDEGDRREA PRGRERSRDR 
GDSNEDGPRK RRSRWGDASA KVNVPGMPVA VMGNVSQTEL DNYAIHVRLE EINRKLRTGD 
VVPPEGQRSP SPTPQYDAYG RRTNTRELRY RKKLEDERTR LIDRAVKSDP NFRPPVDFQH 
KRGSRPQDKV YIPVKEFPEI NFFGLLVGPR GNSLKKMERE SGAKISIRGK GSVKEGKGRA 
GNFPQDEEDE LHCLITADDE SKVKTCVALI NKVIETAAST PEGENDHKRN QLRELASLNG 
TLRDDENQLC QNCGEKGHRR WECPQQRVYS ANVICRICGG AGHMARDCRG RGDPSLTQNK 
QTAFDSEYTA LMAELGEGGG STPGSAPAAA IGAPGAIPPQ SRVPPWRLPE NWQTNSGGFR 
GPPNFQAQGY QQAAPGAAAY GQQAYPGYAG YQTGAVSGYG SPATGGADAY AAYYASMGQQ 
APAAAV