Gene CND02040 details

Gene Information

• Locus tag: CND02040
• ID: 3257422
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006686
• Strand: +
• Start bp: 550121
• End bp: 552078
• Gene Length: 1958 bp
• Protein Length: 488 aa
• GC content: 47%
• IMG OID: 638256138
• Product: 4-aminobutyrate transaminase, putative
• Protein accession: XP_570223
• Protein GI: 58266134
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases
• TIGRFAM ID: [TIGR00699] 4-aminobutyrate aminotransferase, eukaryotic type

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0278782
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAACCA GATCGCTTCA CACCACTATT CGGATTTCCG GCAGAAGGCA ATACGCTACC 
GCAATTGCAG CTGCTCGCTT GGTCCCAAGT CAGCCGCAAA AGCCTAATGT GGTGACAAAC 
ACTATCCCAG GACCGAAAGG GTGAGTTCGA TAGGGCGAAG CAATTCACGA AGATCCTCAT 
TTATGTTGCC ATAGGAAAGA GCTCTCTGCG GCTATTGGCA AATTCCAAGA TCCTCGGGCT 
CATACCTTGG TAGCTGACTA CAACAAGAGC TGTGGTAACT ACTTGGTTGA TGCCGACGGC 
AATGTTCTGT TGGATATGTT CGCTCAAATT GGTAAGTTTC GCAGTTCATG CCAATATGCT 
AACCTCTAGC CTCCATTGCC ATTGGTTATA ACCACCCGGA TTTGATCAAA CTCGCCAAAA 
CGGATAAGTT TGCATCTGCT GCCATGTCCC GCCCCGCTCT CGGATCTTAC CCTCCTGTTG 
ATTGGGCCGA TACGGTCAAT GAAGGAATAC TGAAGGTTGC ACCCAAGGGC TTGAACCAGG 
TTTTCACCAC ACAGTAAGTT ATAAAGCGTG ATCCACAGGC TAACGTTCTA GGGATGGATC 
TTCGGCGACT GAAGGCGCTC TTAAGGCTTC CTTCCTGTCG TACCAAGCCA AGCGAAGAGG 
GAATAGACCC TTTTCGGATG AAGAGATTGA GAGCGTTTTG GAAAATCAAT CCGTAGGTCA 
TTCATTCAGC TGTTCAATCA AATGCTATGT CTAATGAAAG ACACCCAGCC TGGCTCTCCG 
GAGCTGAGTG TGCTTAGTTT CAAAGGTGGA TTCCACGGCC GAAACTTGGG GTCTCTCAGT 
TTGACCCGAA GCAAGCCCAT TCACAAGGTA AGCTTGTCGA GTGTACTCCA ATCGCTTATT 
TGACTTTGAA TTAGCTTGAC ATGCCTGCCT TCGAATGGCC AGCATGTCAA TTTCCCGACA 
TTAAGTACCC TCTAGCAGAG AACACTGAAC ACAATCAAAA GGCTGAAGCA GCAGCTTTGG 
CTCACGTGGA GGAGACAATT CGAGTCTGGT CTAACAAGAA ACCGATTGTG GCAATGATTA 
TTGAGCCCAT CCAGTCAGAA GGCGGTGATC GTCATGCCTC TGCCGACTAC TTCCGAAAGC 
TTCGTCAGAT CGCCAAGAAA CATGACATCT ACTTCATTGT GGATGAGGTC CAAACTGGGG 
TAGGAGCCAC CGGCTCATTC TGGGCGCACG ACAAATGGGA ACTTGAGGAG CCTGCGGACT 
TTGTGACCTT CAGTAAGAAG ACCCAGGCCT CTGGCTTTTA CCATAACTTG TCTACCCGAG 
CACCTTTTGC CTATCAGGCT TACAACACGT GGATGGTGAG TAAGAAAACA TTGAGGCTGG 
GCTAACAATT TAGGGTGATC CTATTCGAGC CCTTCAAGCG CGAGAGATGT TCAAGGTGAT 
CGAGCGAGAT GGTCTCATTG AGAATGTTGC TCGTGTGGGA GATTATATCT ACAAGAACCT 
GGAGCATTAC GAAGCTAGTG GGAACATCCT CAACCTTCGA GGTAAAGGGT AAATCATCGC 
ATTTGTACTT TTCCTGTCAA CTTCTGACGC TAACGTCGTC TTTTAGGCAA GGCACCTTCA 
TCGCTTTTGA CCTGCCATCA CCAAAGGAGC GTGACCAGTG AGCTTAACGA ATGATGTTGT 
GAAGGCTACA GCATTGATTA TTGTAGATTC ATTTCCCAAA TGCGTCTTCA AGGAGTAAAT 
CTTGGTGCTT GCGGTTCGCA ATCTGTGAGA TTAAGGCCTA TGCTGTAAGT AATCAGCTTA 
GTGTATTAAG TATTGTCGTT TGCTGATCAA CAAAAAGGGT GTTTGAGCAA TCTCACGCCG 
ACCTCTTCCT TGAAAAGCTG AGAAACGTCT TAAAATAGTC ATCTTTTTCA AATCTTATTC 
ATTTTCTGGA TATGCGCAAT GCATCAGTTT TTGGCTTG 

 

Protein sequence

MLTRSLHTTI RISGRRQYAT AIAAARLVPS QPQKPNVVTN TIPGPKGKEL SAAIGKFQDP 
RAHTLVADYN KSCGNYLVDA DGNVLLDMFA QIASIAIGYN HPDLIKLAKT DKFASAAMSR 
PALGSYPPVD WADTVNEGIL KVAPKGLNQV FTTQDGSSAT EGALKASFLS YQAKRRGNRP 
FSDEEIESVL ENQSPGSPEL SVLSFKGGFH GRNLGSLSLT RSKPIHKLDM PAFEWPACQF 
PDIKYPLAEN TEHNQKAEAA ALAHVEETIR VWSNKKPIVA MIIEPIQSEG GDRHASADYF 
RKLRQIAKKH DIYFIVDEVQ TGVGATGSFW AHDKWELEEP ADFVTFSKKT QASGFYHNLS 
TRAPFAYQAY NTWMGDPIRA LQAREMFKVI ERDGLIENVA RVGDYIYKNL EHYEASGNIL 
NLRGKGQGTF IAFDLPSPKE RDQFISQMRL QGVNLGACGS QSVRLRPMLV FEQSHADLFL 
EKLRNVLK