Gene CND01200 details

Gene Information

• Locus tag: CND01200
• ID: 3257376
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006686
• Strand: +
• Start bp: 344259
• End bp: 346414
• Gene Length: 2156 bp
• Protein Length: 491 aa
• GC content: 49%
• IMG OID: 638256056
• Product: homocitrate synthase, putative
• Protein accession: XP_570408
• Protein GI: 58266504
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0119] Isopropylmalate/homocitrate/citramalate synthases
• TIGRFAM ID: [TIGR02146] homocitrate synthase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.742854
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCTTCTTCCC ATTTCTTCAC TAAAAGCTTA CATCCATATC AAAAATGTGC CCTCCTGCAG 
ACGAGCCCAT CAACGCCGGC GCTGACCAGG ACATGGTCGC CATCGAAACC AACACCCCCC 
ACATCTCCAC GTCCTCCGCC AACCAAGTGA ACGGCACCAC CGGTACCGCT GAGGCGCAGC 
CCCCTGCTGT CAAGACCCAC AAGGGCTTGT ATGGTCGTGC TTCCGACTTC TTGAGCAACA 
CTTCCAACTG GAAGGTGAGT AACCGTGGGA TCCAACGTTA TGGAACTCGG ATAAATCGTT 
ATCAGTTGTT GGGTATGAAT GGAAGCTGAT GGTTACGTTC AATAGATCAT TGAGTCCACA 
TTGCGAGAAG GAGAGCAGTT TGCTAATGCT TTCTTCACCC TCGAGACCAA GATCAAGATT 
GCCAAGATGT GCGTTGCTTT TTTGACTTCT CTGATTGGAT CGTGTCTCTG ACATCATCGA 
TATAGGCTTG ACGAGTTTGG TGTCGAGTAC ATTGAGCTTA CTTCCCCTGC TGCCTCTCCC 
GAGTCCCGTG CCCACTGTGA GGCCATCTGC AACCTTGGTT TGAAGAGGAC CAAGATTTTA 
ACCCACATTC GATGCCACAT GGACGATGCT CGATTGGCTG TTGAGACTGG TGTCGACGGC 
GTTGACGTTG TCATCGGTAC TTCTTCTTTC TTGAGGGAGC ACTCTCACGG TAAGGACATG 
ACCTGGATTA CCAAGACGTG AGTCGTCTCT TGCCATTGTT TCCGGACATA TCTGATTATA 
TCATAGCGCT ATCGAGGTTA TTGAGTTCGT CAAGTCCAAG GGTATTGAGA TCCGATTCTC 
CTCTGAGGAC TCTTTCCGAT CCGAACTCGT CGATTTGCTC TCTATCTACC GAACCGTCGA 
CAAGATTGGT GTCAACCGTG TTGGTGTTGC CGATACTGTT GGTTGTGCCG ACGCTCGACA 
GGTTTACGAA CTGGTGAGGA CATTGCGAGG TGTGGTCAGC TGTGACATTG AGACTCACTT 
CCACAACGAC ACCGGTTGTG GTACGTTGTC TGACTTTCTG TATATTGATC CTGTGTTGAT 
TTCATCTTTT ATAGCTATCG CCAACGCCTA TGCCGCCCTC GAAGCCGGTG CTACCCACGT 
CGACACATCT ATCGTAAGTA TATCATTAAT GCGAATGTGC AATCTCTTGC GCCTTACTAA 
TAAGGTTTCA GCTCGGTATT GGTGAGCGAA ATGGTATCAC CCCTCTTGGT GGTCTCATTG 
CTCGAATGAT GGTTGCCGAC CCTGAGTACG TCAAGAGCAA GTACAACCTC ACTATGCTTC 
GAGAGCTCGA AAACTTCGTT GCCGAAGCCG TTGAGGTTCA GGTTCCTTTG TAAGTTCACT 
GCGATCCTTG TCTATGGTTA AAAGCTGATA ATCTGTTTAT CAGCAACAAC TACATCACTG 
GTTTCTGTGC CTTCACCCAC AAGGCCGGTA TCCACGCCAA GGCCATCCTT GCCAACCCCT 
CCACCTACGA GATCCTCAAC CCTGCCGACT TCGGGATGAC CCGATACGTC TCTATCGGTC 
ACCGATTGAC TGGTTGGAAC GCCGTTAAAA GCCGGGTTGA GCAACTCAAC CTCAAGCTTA 
ATGACGAACA GGTACGTGCT ATCTTTGATG AGGATATCGT ATTTCAGCTG ACCAGTATTA 
TACAGGTCAA GGATGCCACT GCCAAGATCA AGGAGCTCGC CGACGTTCGA ACACAGTCTA 
TGGAGGACGT TGACATGATC CTCCGTATTT ACCACACTGG TATCCAGAGT GGTGACCTCA 
AGGTCGGCCA GTCCGCCGTC CTCGACCGAT TGCTCGAGAA GCACATGCCC TCAAGAGATA 
ACTCTCCCAG CGGCAGGTCC TCCAACGCTG ACGGTACTCC CGCCAAGCGT CAACGAGTCG 
GAGAGCCTTC CGCCTAAATC TAATACCATT CTTACACAGA GGGGTTTTGG ATCTGTGGTC 
TAGAGACGCG AAGAATGTAT GAATTTAAGG ATTCGAAGAG ACCAGTCACA AGTACTACTG 
TATTTAGGAA AATGTAGACG AGGAGATCAG TTCAAAAAAG GCGTTTATCG TTTTCTTTTT 
TCTTCTTTCG TCTTTGCCGT TATGTTACGC TATGCATCAA TTGGATTCTA ATTGTT 

 

Protein sequence

MCPPADEPIN AGADQDMVAI ETNTPHISTS SANQVNGTTG TAEAQPPAVK THKGLYGRAS 
DFLSNTSNWK IIESTLREGE QFANAFFTLE TKIKIAKMLD EFGVEYIELT SPAASPESRA 
HCEAICNLGL KRTKILTHIR CHMDDARLAV ETGVDGVDVV IGTSSFLREH SHGKDMTWIT 
KTAIEVIEFV KSKGIEIRFS SEDSFRSELV DLLSIYRTVD KIGVNRVGVA DTVGCADARQ 
VYELVRTLRG VVSCDIETHF HNDTGCAIAN AYAALEAGAT HVDTSILGIG ERNGITPLGG 
LIARMMVADP EYVKSKYNLT MLRELENFVA EAVEVQVPFN NYITGFCAFT HKAGIHAKAI 
LANPSTYEIL NPADFGMTRY VSIGHRLTGW NAVKSRVEQL NLKLNDEQVK DATAKIKELA 
DVRTQSMEDV DMILRIYHTG IQSGDLKVGQ SAVLDRLLEK HMPSRDNSPS GRSSNADGTP 
AKRQRVGEPS A