Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CND00580 |
Symbol | |
ID | 3257276 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006686 |
Strand | - |
Start bp | 165297 |
End bp | 167663 |
Gene Length | 2367 bp |
Protein Length | 739 aa |
Translation table | |
GC content | 52% |
IMG OID | 638255993 |
Product | alkylbase DNA N-glycosylase, putative |
Protein accession | XP_570311 |
Protein GI | 58266310 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5574] RING-finger-containing E3 ubiquitin ligase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.308073 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | CCCTTACAAT GCCACCCTCA ACCCATCCTC AATCTCGCTC CAAACCTCTC CTCAACATGG ACTCCGACCC GGCGTCATGG CTGAACTTCT CTCTTCCGCC ACGCGCAAGA TCAGGCGCGG GTGTCCCCGG CTCTGGCGTC CCTGGTCCAC CACGCAGGAG CAGGAAAGGT GGCGAGGGCT GGCGAGGTGG GGTATTGAGT AGAGAAAAGT ACCTCAATGC TTCATTCAAG TTTGTCTTAA AACCGAGCGA GGCGTTGTCT TATGGAGCGC ATTTCGCTGA TCCAGATATG TAAGTTGCCA CTTGGCTGTA GAACGTAGTC TCACGTGTAT GGTAGATCGT TACACTGGCC CAACATCTTG CAGATACTTG TCCCGACGTT CAGCGCGCTG TCAGTAGCTC AAGGGTATGT ATCCGAGCCG CATGCTGAAG GTGGTTATAC ATCACATGAT TTGGAGGAGA TGGGCGAGGA AGCAGCAGAG CGGCGGCGGC GGATGGAGGA GGAGAAGCGG GGGAGGATGT GCCCTATTTG CTTGGGCAAA CCAGTGGCAG GGAGGATGAC GAAGTGTGGA CATGTAAGTG TTGTTTATTT CTAGAAGGGG TTACGCTGAC ACCGATCAGA TCTTCTGCTT TCCCTGTATT CTACACTACA TCCAACTCTC TGACATTCCG AAATCTGCGA AATGTCCGAT ATGTGGAGAT ATGGTCCAGT CAAATGCGCT CAAGAGTGTA AAGTATCTCG ACGCAGAGGC AATGTTAGAG TCTTCCACGC ATGCCACCAG TGACGCCTTC GAAGCTTCAC TCGAAGAAGC CAAAAGGCTC GATTCGGGAG ATCGTCATGA CAAACGACAT CGACTTCACA TGCGCTTGAT TCAACGTCCC CAGATGACTA CTCTTGCTTT GCCTTCCTCT TCGACCTGGC CTTCCGACGC TGTACCCCCG CACACCGCAC CGTGGTATTT CTTGCCCGAT ATTATCACTT ATAGCCGGTA CATGCTGGCT ACACCTGAGT ATATGGGCAA GGAACTAGAA CGGGAGATGA AAGAGTTGGG GGGAGAGTGG GAACTGCTAA GAGGGGATGA GCTGGGAAGG GTGTTTGTCA AGGCTGCGAT GGACAAGGTT GAGCGGCAGA TGATCAAGGT GAAAGAAGAG CTTGAGACGG AGTTGGTTAG AAGGTCTGAG AGAAAAGGAA GAGAGGCGTG GAGTTCGGCG ATCGGCGGGG ATAAGAAAGA GAAAGAGCAA CAGAAGGAGA GGGAAAGGAA AGAGCAAGAA CGGATGAAGC GAGAGAAACA GCAAGACATT GGAGCGGTCC CTGTGGAATT CCTTGCGAAC CAACAAACTA CATTTGATAA CTCTGCCAAT ATAAATATCC CTCCAAATCT CCCTGTCGAA CCGAACCCGA TGCCACCCAT GCCTCGAGAT AAAAAATCTC GTCGCCGACT TAACCCTGTT CCACCTCCTC AGTCTGTCCC TCCTGCTCCG TCATACTACT TTTATCAATC CTCCCTTGGC GCAAATGTAT TCTTACATCC ACTCGACATC CGCATGTTGC TCGCCCACTA TGGATCATAC AATCTCTTTC CTTCCAGCAT GACCTTTGAA ACAACGGGCT ATGATCCTGG GACGATTAAC GACGATCTCC GTAAACGGTG CAAATACCTC TCTCATCTTC CTCTCGGCTC CGAAATTGTC TTTGTTGAAA CCAATCTGGC CGAACTTGTC TCCTCTACCA TCCTGGCCCA ATTCGAGCAA CCTCTCAAAG CGCGTAGACA AAAACGCAGA GACAAGGTGC GAAAGGAAGA TCGGGCAAAA CAAAAATGGG AAAAGGCCGA ACGGTCAAAA ACGGCAGAGG AGCTACAGAG TGTCAGGAGC GTACCGAGCG CGTTTGTGCG CGGTGGGGTG GAAGAGGATA GGGAGTTGGA ATTGGCGTTG GCAAGGTCGG CGGTGGAGTT TGAGCAAAAT TTCCCGGTGG CGTACCCCCA ACCTGGGATA GCGTCTTCCC CACCTCGATC GGGGTCTTGG GGTCAGACTC CAATCCAAAC CCAGAGCGAG AGCCAGCAAG ACCAACAGAG GAGTTTTGCA ACAGCCCTTC ATCAGAGGTA CGACCCTTCT CTCTCGAGGT CGAGGAGGGA AGTCGATCCC GAGGTGGATG CGTTGTGGCA GCAGTTTGAG TCGACGGATG TGCATTTGGA GCCGAGTATG GGTGCGAATG CCGGCGCGGG TACCGGAGCA GGTGTGAGAG AGAGTGAGAG AGGGAATGGG AGGAAGAAGA AGGAAAAAGG AAAAAAGCTG ATCTTGGGTG GGGGTGGACG TCGGGCGTGA AAGATGGGTC AGAAGTCATA AAGTATAGTC ATTAGATAAA CTATCAT
|
Protein sequence | MPPSTHPQSR SKPLLNMDSD PASWLNFSLP PRARSGAGVP GSGVPGPPRR SRKGGEGWRG GVLSREKYLN ASFKFVLKPS EALSYGAHFA DPDISLHWPN ILQILVPTFS ALSVAQGYVS EPHAEGGYTS HDLEEMGEEA AERRRRMEEE KRGRMCPICL GKPVAGRMTK CGHIFCFPCI LHYIQLSDIP KSAKCPICGD MVQSNALKSV KYLDAEAMLE SSTHATSDAF EASLEEAKRL DSGDRHDKRH RLHMRLIQRP QMTTLALPSS STWPSDAVPP HTAPWYFLPD IITYSRYMLA TPEYMGKELE REMKELGGEW ELLRGDELGR VFVKAAMDKV ERQMIKVKEE LETELVRRSE RKGREAWSSA IGGDKKEKEQ QKERERKEQE RMKREKQQDI GAVPVEFLAN QQTTFDNSAN INIPPNLPVE PNPMPPMPRD KKSRRRLNPV PPPQSVPPAP SYYFYQSSLG ANVFLHPLDI RMLLAHYGSY NLFPSSMTFE TTGYDPGTIN DDLRKRCKYL SHLPLGSEIV FVETNLAELV SSTILAQFEQ PLKARRQKRR DKVRKEDRAK QKWEKAERSK TAEELQSVRS VPSAFVRGGV EEDRELELAL ARSAVEFEQN FPVAYPQPGI ASSPPRSGSW GQTPIQTQSE SQQDQQRSFA TALHQRYDPS LSRSRREVDP EVDALWQQFE STDVHLEPSM GANAGAGTGA GVRESERGNG RKKKEKGKKL ILGGGGRRA
|
| |