| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC06520 |
|---|
| Symbol | |
|---|
| ID | 3256658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 1906119 |
|---|
| End bp | 1910936 |
|---|
| Gene Length | 4818 bp |
|---|
| Protein Length | 1417 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | 638255871 |
|---|
| Product | suppressor protein SPT23, putative |
|---|
| Protein accession | XP_569907 |
|---|
| Protein GI | 58265502 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0666] FOG: Ankyrin repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCCA TAGATTCTCC CTCAGTTTTT TCATCACCAT TTTCCGCACG GTCCACCATT
GAGTCTTCGC CTGAAGCCGT TGGCGGTCAG AACAGTGATC CAAGGAGCAA TGGACATGGG
ATAGAAGCTC CTGCAGGTGT AATGCAGGCT CTGCTAGGAG AGGTCAACGG GTTAGTATTT
TTACCAGGTT GAGTTACACT GCTGACAAAC ATTTTAGATC ACATGCTCAA AAACCGTTAC
CTATCACTCG CTCATCTTTA CCTGCACAAC CTCAACAGTA CCAAAGTTCC CGGTCAGATA
TCAAACCCTT ACTCGATACG AAACCTTTTC ACTCTGTCTC AACTCCCATG GCCGGCTCAT
CAAAGGTGTC TGACCGGGTG TCAGCAATGA ACTCGGCGGG CATTCCAAGC GTCAGCGCTA
ACACCGGCGC CTCCGCTTAT GGAGGATCGA GGGCTGAGCC CCCTAAAAGG ATGTATGATG
TCGAGGGGTT ATCAACTGTG GATCCCTCTT TGGATGACCT TATGGCTGGG AGTAACGGGT
GAGTGTTCTA TACATCCATG TTGAAATTAG CCAACAAACG TACGTGTATT TCAGACGTAA
TCAACTCCTT CTCCAGGGAG ACCCTCTATA TGCCGATAAA TCCAGAGTTG AAACGGCAAT
CAGAGTTATC ATCGACATTC TTCGTCTTGC TCCTCTCCAT TCACCGATTC CCCCACCATC
ATTACATCCT CTGATCCCGA AGGGCCCTAA TGGCGATTTG TTGATGACTT TTGAGCGCAT
CTCCACTTTC CATGGCCTTC GACTACAAGC TGGCACCACT ACCAAGAATA GCTCCAAAAA
GCAGCTGCAA GCTATTGGAC ATATTCCCAA AGACAAGTTG GCGTATCTTG AGACGGCAGT
TTACATGTCT GGCGAGGATG GTAAACGTGT ATATGTCTGT AAGCGATGTC GCAACCGTGA
AACCCGTCGA CGAGAAGCCA AGGACCGGAA TCGTAAACGA GCGCAACCCG CTACATCTGA
TTCTGATGCC GCTTCACCTG CATCTAAACC CCCACGGCAA TCACTCGTTC CGCCATCAGT
AGATTTCATT ACTGCCGAGA ATCCCGATGA CTATGATCCG AAGAGAGCGG GACAGATGGT
GGAGGAACCT TCATGGGATC CGGATTGTGC AGATTGGAGG CACGATATTG TGTTGTTCAA
TACCCCTGCA GAGGTCAAGC TTGAGGATGG GAGCTGCAAT TGGTTGCCTT TCAGAGTGGT
TTGCTATGGG AAATGTCACG GTGAAAAGGT CGGCTTCAGG TAAGTCTATC AATTCTTTGA
CATATGACTT TGGCTAATAA GGTTAGAATC AAATTTACTT TGAGGACGTA TGATGGGCGG
ATATTAGCAA CTTCCATGAC AAAGCCGATC CGAATCACTG ACGATCACAA AACTGATACT
AAGGCTAAAC CCAAGCCTAT TGCCATTGAA GGTCCGCCAC AGCCTGCAGT GGCTCGACGA
AAAGCTCGTC CCAATGTCGC CTTGATGGCA TCTTCTCGTC CTCAATCTCC TAGTCCTTCT
GAGGCAGAGA GTGTGCAGAG TTTCCAGTCA CTTGGCGAAG CTGGAGCAGT GATACAGAAG
CAAACCCCGA GTGTTCGAGC CGGTAAACCC TACGAGCGAC CTATCCAATC TACACAACCA
TCCCAGGCTC CTTCTCCAGT GAGCTATGTA GCCGCTCAGA TGGCAGGCCT GCCATCTGCA
AATTTCTTCT CCAACGGTAC CAATGGCGTC ACTCCCTCTC ATGCACCACC TCCCCAAACT
GCACATCAGC CAATGCAGAT GTCTAATGAT CTCAACATGT CGCAGTACAT CCATACTGTC
TCTCCTCACG AACTCCGTGG CCCCCAATTC CAATCTACGT CTACCAACAT TAGTAGCTAC
AGCGTCCCTC ATTCCGGTAC GCCATCTGCA GCCTCCTCCA CTGCTGCAAG TCCCAGAACC
CAGATGGCTG GTATTCAAGA TGATATCATG AAGAGCGGGT TTCCAGCTGG CTTACTGGAG
TCGCTTGGAT TGAACAGACC CAATGGTAAT GCAGGACAAG GACAAGGGCC GATGCTGTAC
CACGCTCGAG ATACCGATGC TGAAATGGCT AACCTCATTT CTGGCGGCTT CGACGATCTT
TTCGCTGGGT CTAGCAGAGC TTCAGTTAGC AGTATGGATA ACGATCAAGC GAGTGTCAGT
TCGGCATCGG TCTTTTCTGG ATGGGATGAC CGATCATCCG CGATGTTCAG TCAGAGTGGG
CTTCCACCGG GAACAACTGT CGTGGAGGAC GTGGATGAGG ATATGGAAAA GTATTTGGAT
TACACGGGCG AAAATGGTGT GCAAGGTGAT CACCAAAGAT CTCGCGTAGC AAGCAGCTTT
AGTAGTCCGC TCACGGGGTC AAACTTCTCA GGATTGCCTT TTGACGAGCC TTTCCATTCA
CCTCTCAACT CGGACCTCCG CCATCAAATT CAAGAACAGC AGCGACAACC TATCCCTCCT
CAATCTTCTT TCCCTGCGCT TGTTCCTGCA CCTGCCCCAG CCCTTACTGC TCCACAAGCA
CCGCAACCGG CCATTACCCA CGTTATTCCA GGCGAAGGTC CTATGGCCGG TGGGCCTACC
ATTGCCATTG CCGGGCAGGC CTTCCAGCCA GGAATGGTTG TTGTGTTTGG TCAACGTCCA
GCAGCGACAG AATTTGTGAG CAGTGGGTTC ATGCAATGCA AGTTACCGCC GAGTGCTTTC
GCGGGTGTGG TGGAGGTAAC TATCCAAGGT ATTGGGTCGG TGGCAGGAAA GATGGTGTTC
TCATATACGG ACATGGAGAA GGATGCGTAA GTTGTCTGGT TCGTGTGTAG AGAATCATTG
TGCTGATGAT TACTCAGGAT GAAACTTGCT TTGGCCATTC AAAGCCATTA CCAAGGTTCG
CAATCCGATC CAACATACCG TTTGGCGCAT CAAGTTGCTC GATCGTCAAG TAGTCAGCGA
TCCCACTCCA ATTCCGCTTC TCCTTCCGGT CAATCCCCAG GTGATAACCT AAATATCAGC
GCTGCCGCAA ACCTTAACGT AATGGATACT GGTGAAGACA CCGATTCTCA AACCTCTTCT
CTCGATTCCA AATCCACCGA CGATAGCACC AATTCTGATC TTCAGTCTAC TATAATCACT
TTCCTAGCGT CCATCGACTC TCACGCTCCA GGATCATTAC GCGCCAGTGG AGCGATTAAC
CACACCAACG CCTCTCAGCA AACTCTGTTA CATATCGCGT CCGCCATGGG CTTTTCCCGC
CTCGTTCGAC GGCTTATTAT CGGTGGTGCT CAAATTGATG TGCAAGACAC TAATGGCTAC
ACGCCCCTTG CTTTTGCTGC ACTGTGTGGA AGACATACAT GTGCGAGAGT ATTGATTGAA
GCTGGAGCTT GGTATGACCG AGCGACCAAT TATGGCGAGA TGCCCCTTGA TTTGGCCAAA
TTTGGAGAAC ATTCGAAAGT GGAGAGGCTC TTGCTTTCTG CTGTATGGTC AACGACTGCG
GAACCGATAG AAACTGGAGC AGTAGCGGCA GTTATGGCTG GCGGCATGGG AGAAAGGGGA
AGTCAGAAGG CAAGTGGCGG ATCGCCGAGG TCTGTTGCTG CCAGTCTTAC CAGCTCAATC
GACGACGACA ATCCTTCGTC TTCTTCTGAA GTAGAAGATG ATGTGACCAA GTTTCGACGG
TCGTCTATGC CATCCCGTCC CAGATCCAAA TCACGACAGT CAAAGGACAA AAGGCCGATG
TCTATCAAGT CGGGTAGATC AGAAAGGCAT CATCTTTCAT CTATTTCTGT CGTTCGTGCC
CCGTCCAATG TGGGAGAGAC TATGGACGAC CCTCCTCCTT ATGCGCCGCC TACCGACCAC
TCTCGGATCG GTGTGCATCC CGCTCATGCT GATGATCATG ATTCTTGGAT GAAGGCGCTC
GCATCTTTGC CTCACGTCCC TCACTTCTTA CCGTCGGGCG TATGGGATCA CCTTCCGTCA
CGTCATTCTC TTTTTGGCTC CGATAAATCT GCTCGTACGG CTTCAGAACA TGAACATGGT
TCATCCAGTC ATGGATGGGT TGCATTCCCT ACTCCGTCAT GGGAAACCCT CACCAGGATG
GCTAGTCCTG AAGAGGTCAA GCTGTTCACT CAAGCGATGG CTGCTGCAGC GCTGAATGCC
GTCGTACAGA CTGGTGCGAC TACTCCCGCC ATTCGCTCAG GACCTCGGGC CAGGAAATCT
AATGCTGGTC TTCCGGCAGC TGATACAGAA CTAGATATGG ATGCAGAAGG TGAAGGAAGA
AAGAAGGGTA GAGAAGATGA GGAAGGCGTG AAGAATGGTA GCAAAAGCAG AAGAAGAAAA
TCAGCCAGTG CGTCCGGGCT TGGTGGTGCG ACTATGGTGT CAGCCAAGAG ATCGGATAGT
GCATCCCCAG ACAATGTTGT GAACCACGTC AAGCGTAAGT CTTTGCCTTT CTGTTGCTAT
AAAGTCCATG ATGCTGACAA TGTATGGCAG GCGATCGAAT GCTTTACCTC TTCTGGCTTC
CCATCCTCTT GTTTGTCGGA TTTTGGCTTC TTGTTTCGGC TTTACCGATC GCCACTGGCT
TCGGCCTTAT CTACGCCAGG AAAATTACCA AAGCTATCAA GGGGCGGATG TGAATATAAT
TAGAAGTTCT CGAAAGTCGG TGCGTGTACG GAAGCAACGT AGAGGATTGG TCGTTAATAT
CCGTAGGCTG AGAGGTATAT AGATTATTTG TTCAGGGATA ATACTTAATG TCATTTCTTT
CCGCAGTGTT GGCAACTT
|
|---|
| Protein sequence | MLPIDSPSVF SSPFSARSTI ESSPEAVGGQ NSDPRSNGHG IEAPAGVMQA LLGEVNGSHA
QKPLPITRSS LPAQPQQYQS SRSDIKPLLD TKPFHSVSTP MAGSSKVSDR VSAMNSAGIP
SVSANTGASA YGGSRAEPPK RMYDVEGLST VDPSLDDLMA GSNGRNQLLL QGDPLYADKS
RVETAIRVII DILRLAPLHS PIPPPSLHPL IPKGPNGDLL MTFERISTFH GLRLQAGTTT
KNSSKKQLQA IGHIPKDKLA YLETAVYMSG EDGKRVYVCK RCRNRETRRR EAKDRNRKRA
QPATSDSDAA SPASKPPRQS LVPPSVDFIT AENPDDYDPK RAGQMVEEPS WDPDCADWRH
DIVLFNTPAE VKLEDGSCNW LPFRVVCYGK CHGEKVGFRI KFTLRTYDGR ILATSMTKPI
RITDDHKTDT KAKPKPIAIE GPPQPAVARR KARPNVALMA SSRPQSPSPS EAESVQSFQS
LGEAGAVIQK QTPSVRAGKP YERPIQSTQP SQAPSPVSYV AAQMAGLPSA NFFSNGTNGV
TPSHAPPPQT AHQPMQMSND LNMSQYIHTV SPHELRGPQF QSTSTNISSY SVPHSGTPSA
ASSTAASPRT QMAGIQDDIM KSGFPAGLLE SLGLNRPNGN AGQGQGPMLY HARDTDAEMA
NLISGGFDDL FAGSSRASVS SMDNDQASVS SASVFSGWDD RSSAMFSQSG LPPGTTVVED
VDEDMEKYLD YTGENGVQGD HQRSRVASSF SSPLTGSNFS GLPFDEPFHS PLNSDLRHQI
QEQQRQPIPP QSSFPALVPA PAPALTAPQA PQPAITHVIP GEGPMAGGPT IAIAGQAFQP
GMVVVFGQRP AATEFVSSGF MQCKLPPSAF AGVVEVTIQG IGSVAGKMVF SYTDMEKDAA
AANLNVMDTG EDTDSQTSSL DSKSTDDSTN SDLQSTIITF LASIDSHAPG SLRASGAINH
TNASQQTLLH IASAMGFSRL VRRLIIGGAQ IDVQDTNGYT PLAFAALCGR HTCARVLIEA
GAWYDRATNY GEMPLDLAKF GEHSKVERLL LSAVWSTTAE PIETGAVAAV MAGGMGERGS
QKASGGSPRS VAASLTSSID DDNPSSSSEV EDDVTKFRRS SMPSRPRSKS RQSKDKRPMS
IKSGRSERHH LSSISVVRAP SNVGETMDDP PPYAPPTDHS RIGVHPAHAD DHDSWMKALA
SLPHVPHFLP SGVWDHLPSR HSLFGSDKSA RTASEHEHGS SSHGWVAFPT PSWETLTRMA
SPEEVKLFTQ AMAAAALNAV VQTGATTPAI RSGPRARKSN AGLPAADTEL DMDAEGEGRK
KGREDEEGVK NGSKSRRRKS ASASGLGGAT MVSAKRSDSA SPDNVVNHVK RDRMLYLFWL
PILLFVGFWL LVSALPIATG FGLIYARKIT KAIKGRM
|
|---|
| |