| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC06390 |
|---|
| Symbol | |
|---|
| ID | 3256377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 1855736 |
|---|
| End bp | 1857709 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638255858 |
|---|
| Product | conserved hypothetical protein |
|---|
| Protein accession | XP_569895 |
|---|
| Protein GI | 58265478 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAGAGTATTC TTTTCCCTCA GCCACTTAGC CACAAGTCCT TTTTTCCTAT CTCCATCTAA
AAATATAGCT TATTGCTTGT ACTTGGGACC AGACTACCAC GATGGTACAG CCAAAATCGA
TTGTTACCAC CGTGTTCATC GCTCTCGTCC TTGATCTCCT AGGTCCGTCA ACTTGAGGTC
GAGTTCTTCA ATAATTCGGT TCACTAATAA CGCGTCTATT TATAGCATTC ACTATCCCGC
TGCCCCTCTT CCCGCGCCTG ATAGAATGGT ACCTCTCAAA AGACACCTCT CCGGACTCGC
TGATATCCCG CTCGCTTGCG TTTTGCAACT CGATTAGAGC GCCTCTCCAT GCATTACGGC
CGACTTCCGC TGCCTTGTCC AGTAAGGATG ATGCGGGGAC CAAAAACTGG GATGTGGTTC
TTCTCGGAGG TATGATGGGA AGCCTTTTCA GTTTCTGCCA ATGTATCATT AGTCCTTGGC
TGGGTCGTTG TAAGTTCCAT CAGCAGACCG CAACTCAACT ACTGACTACT CACCATGTTT
GTAGTGGCTG ACAAGTATGG AAGAAAGAAA GTTCTCATAG CCACTATGGT CGGAAATGTT
GTCTCTGCCA GCATCTGGAT CAAATCTACC TCTTTTGTGG GTACAAATGA CACTCCATTC
TCAAGCCCGA AAAGCGCATT CTGACTGATT GGCAGGAGTC ATATCTCTTG TCTCGTCTCG
TAGGTGGGTT GAGCGAAGGC AATGTACAGC TGAGCACGTA AATACGGGTT TAGAAGCCAC
CACTTCAAAA AAGCTGATAT AATCACAGGG CAATCATCAG TGATGTGACT ACATCTGCCA
CCAGGTCCAA ATCTCTCGCC CTTGTTGGTA TTGCCTTTTC CATCTGTTTC ACTTTTGGGT
AAGTTTCATA CGAGTTAGTG ACGCATTACA ACTATTAATA TCGGGCCAGA CCATCTCTAG
GTGCCTACTT TGCAACTCGA CCTCTCCCGC TTGGGACCTC TGATGATAAA TTCAACGTTT
ATGCGATGCC AGCCGCTATC TCCTTAGGAC TTCTACTTCT TGAAACCTTG TTCTTAGCCG
CCAAGTTGCC AGAGACGAAA GGATATAAAG TCGAAGAGGT ATCTAATGCA AATCCCGAGC
AACCATCCGT GCCCGAGCCC AAGGACATCT TTGAAGACAA AGAGCAGAAG GTGCAACGAT
TGAAAGATAT GACCGGTCTC CATGGCTATT TCCTCTTGTT CTTCTCTGGA GTGAGTGCTT
TCACCTCTCC AACTTTAATG ATCTTGCTGA ACTAATTCTA GGCAGAATTC ACATTGACTT
TCCTGACCTA TGACATCTTC TCTGCGTCCA ATGCATACAA CGGCAAACTG CTCAGTTGTA
AGTCGCTGTC ACCACTATCC TTTGTATTCT CCTTCTGAAC AATATGCAGA CATCGGTATC
CTGGCAACCA TGATTCAAGC TCGTCACGTG CGTCCATCCA TGGCCAAAAC TGGTGAAATC
CAAGTAGCTC TAGATGGTAT CGCCAGCTGC ATTCTCGGCG TCTTTCTTCT CCATCTAATC
CCATACACTG TCTCCCTCGG CACTATCAAT CACATTCTCC TCTATGTCGC TGCTACATGC
CTAGCTTACA CCAGCGCAAC GACCGTCACT GGGTTAACAG CTGCCGCTGC TGGATGCTGT
GATGAGCGAT ACCCTGAGCT GCAGAGGGGG AGGGCTTTAG GCAAGTTCAG GTCGAGAGGA
CAGTTAGGTA GGGCAGTGGG GCCGTTGTTG GCGTCAATGT TGTATTGGAT GGAAGGGCCT
TCGGTGGCAT ATTTGACATT GGCTATGTGC TTGGGTGGTG TATTAATTTT GGCTCCCCGA
GGCGGTGTGC AAAGGTATAG ATGGTGGGTC AAAGAGACAA AAGAATAGAA GGACAGGAAA
AGCACGACGG CGACCAAGTT TGTTTAAAGA CATGTACATT ACGACATATC ATGA
|
|---|
| Protein sequence | MVQPKSIVTT VFIALVLDLL AFTIPLPLFP RLIEWYLSKD TSPDSLISRS LAFCNSIRAP
LHALRPTSAA LSSKDDAGTK NWDVVLLGGM MGSLFSFCQC IISPWLGRLA DKYGRKKVLI
ATMVGNVVSA SIWIKSTSFE SYLLSRLVGG LSEGNVQLST AIISDVTTSA TRSKSLALVG
IAFSICFTFG PSLGAYFATR PLPLGTSDDK FNVYAMPAAI SLGLLLLETL FLAAKLPETK
GYKVEEVSNA NPEQPSVPEP KDIFEDKEQK VQRLKDMTGL HGYFLLFFSG AEFTLTFLTY
DIFSASNAYN GKLLSYIGIL ATMIQARHVR PSMAKTGEIQ VALDGIASCI LGVFLLHLIP
YTVSLGTINH ILLYVAATCL AYTSATTVTG LTAAAAGCCD ERYPELQRGR ALGKFRSRGQ
LGRAVGPLLA SMLYWMEGPS VAYLTLAMCL GGVLILAPRG GVQRYRWWVK ETKE
|
|---|
| |