| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC05900 |
|---|
| Symbol | |
|---|
| ID | 3256249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 1742935 |
|---|
| End bp | 1748127 |
|---|
| Gene Length | 5193 bp |
|---|
| Protein Length | 1344 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | 638255811 |
|---|
| Product | Sin3 protein, putative |
|---|
| Protein accession | XP_569814 |
|---|
| Protein GI | 58265316 |
|---|
| COG category | [B] Chromatin structure and dynamics |
|---|
| COG ID | [COG5602] Histone deacetylase complex, SIN3 component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGCCCCCACT CCGCCCACCA TATCCCACAA CATCCCCCCA AAGCGCCCGT CCCCCACCTG
GCAGCAGCAG CAGGCGGGGG GCAACAGCAA CCTTCGTCCC CTCAATGTCA GGGACGCATT
GTCGTATCTC GACCAGGTCA AGGTGAGTGC TCTGTCGGAG CGGCGGTCCG GATGGGCGGC
CCATTCGTGG GCCGTGCGAT GGATGGAAGC GGATGCGGCG TGCACTGGTG GTGGATTGAC
CGGTGGAGTG AAAAGCGCTT TTGGTGCCGC CTCCACCGGA AAGAGAAGGT CTCCATAAAA
GTGTCTGCAT GCTTTGTGAC GTGCGCGACT TTGCGAGGCG GGATCCGGGG GCGTATACTG
TGCGGGAACC TGTGGAATGC GAGTAGAGAG GCATGGCAGG CGAGAAAACG GGTCACCCGC
AACACCTCAG CCTCCACCGG CAGCTCCGGC TCCTTTTGCG GAAAGTCGGA TACTAACACC
ATTGCAGATT CAATTCAACG ACCAACCAGA TGTATACAAC CGCTTTTTAG ACGTGATGAA
AGAATTTAAA GGCCAAGTGT GAGCAGATTG ATGCCTTTTT TTTCTCTTCT ACTTGCGAGC
CATGCTGACC GTCGCCGGTA GTATTGACAC ACCCGGGGTT ATCGACCGAG TGTCAACACT
CTTCCGCGGC CACCCATCAC TTATCCAAGG CTTCAACACT TTCCTCCCGC CAGGATACCG
TATCGAGTGC TTTGGAGGCG AAGGGGATGC TTCAGGGTTG ATCACTGTCA CCACACCTGC
TGGAACAGTC AGCCAAATTC CTGGCAACTT TGCAGCTGCC ATCGATCAGC GGGAGCGAGA
AGCCCGTGAA GGTATCCAGG CGTCCGCCGC CGAGGTTACT GCTCGTGATA GCCGGGCGGG
GTCGTCTGCG CCTTACCCTT CAGCCACGAG TCAAGGTGCT GCTCCAGCTC AACCTTTACC
GCCGTTGAAC GCTCTTCCGT CACATATCCC AAGCGGTCCT CCTCCTTTCC AAGGTGCTTC
CCATACTGGC CGACAAGCAG CTGCTCCGCC ACCTGCTCGC CAAGCTCCTG CAAGCCAGGG
TCCCGGTACG CTTCCTCTGC CTCCTCACGC ACAGCATCCT CTTCCTCCGT CGGGCCCTTC
CACGCCTTCT GCAGCTCAAT TCCTCGCATC TGGCGGACTG TCTCACGGCG CTCAACCTGC
TCCTCAGCCA CAACAAGGTG GCAACCGAGC CCCGATCTTA GAGTTCAACC ACGCTATCAC
CTTTGTTAAC AAGATCAAGA CTAGGTTCAA CAACGACCCC GAAACTTACA AGCAGTTCTT
GGAAATCCTT CAGACATATC AGCGTGACAC GCGGGACATT GCAGAGGTGT ATGAGCAAGT
TACCAAGCTC TTCACCAATG CTCCCGATCT GCTCGATGAA TTCAAGCAGT TCTTGCCCGA
GAATGGTACA GGCGGTCTGG GTATGCTTTC TGGCTCATTC ATGCAAGCTG CTGGTGCCGC
GCCTGTTGTT CCCGAAAAGG TCGCAGGTCA AAAGAGGGGT GCTGCCAAGG AGGGTAAAGA
GATGGGTCAA AAGAAGCGAA GGACGGCTGC TTCGGGTGTC GAGCCTGCGA CAAAAGCAAC
CCAGGGCAAA CGCGCTCGAG CTGGTCAGAG GGAGAGTCCT TCTTTAGAAG ACGTCGAGTC
TGGACTCCCT GCTCTCACGC CTCAACAGCA AACTCTTGCA TCCCCCGACG AAGTCGCGTT
CTTTGACAAG GTTAAGAAAT TCATTGACGA CAAGGTGGTC TATCACGAGT TCCTTAAACT
CATCAACCTC TTTGTGCAGG ACATGATTGA CACCAAGACC TTGCTCGACC GGGCGCAGCT
GTTTATCGGG GATGCTCCCG AGGTTTGGGC AACATTCCAG AGGGTGGTGG GCGTCGATAG
CGAGGGTAGG ATCCCGCCTA ACCCTGCTTC CATCCAGGGT GGCTACGGGT TTGGTGGAAT
GATTGGGATT GATAACTTGA TGGTGGAGAA CACCCCGATG TTGGACAGGG TCAAGCCTGA
TATGAACTTG GCGAGCGCCA ACCAGGTTGG GCCAAGTTAC CGCCAGCTGC CACGATCTGT
AGGTCATATC TGTTTATCTT GTTTTCTATC AAGGCAGAAT CACTAACGTA AAATGGGAAA
TAGGAAATCA ACCTTCAATG TACTGGTCGG GATGCCATGT GTTGGGAGGT GCTCAACGAT
GAGTGGGTCG CTCACCCAAC TTGGAACGCC GAGGACGTGG CACCGTTTGT CTCTCACCGT
AAGAATCAAT TCGAAGACAA CCTCCACAAG TCTGAGGAAG AGCGCCACGA GTACGATTAC
CACATTGAAG CCAACCTGCG CACCATCGCT CTGCTTGAGC CCTTGAATAA CAAGATTCAG
ACCATGGAGC CCGAAGAGAG GGCAAACTTC AACCTCAAGG CTGGTCTTGG TGGGCAAAGC
AAATCCATCT ACCAGAGGAT TATCAAAAAA GTGTATGGTA AAGAGCTTGG GCCAGACGTC
ATTCGCGCTC TGCACGACAA CCCTATTGTT GCTTTGCCCA TCGTTCTTGA ACGTCTAAAG
GCCAAGGACG AAGAATGGAA ACGTGCCCAG CGCGAATGGA ATCGACTGTG GCGAGAGCAA
GATGCCAAAA ACTTTTATAA AGCTCTTGAT TACCAGCACT CGGGTACGAA AGCCACCGAC
AAGAAAAAAG TTGCGCCTGC CAAGACGCTC ATCAATGAGA TTGAGGCACG CAAGGCTGAG
CAGCTGAACC AGCGTTCGGC ACTTGTCGAT TTCCGCGTAT GGAGGGCCAA GCCGCAGATG
GAGTTTGAGT TTACGGATAT GGATGTGCTC AAGGATTCGA TGAAGCTTAT CATCAGTTAC
CTCGACAGGA TGCAGAGCAA CTCGCTCTCA TCTGCCGATC AAGTCAAGGT GGAGAGTTTC
CTCCGCGACT TTGTGCCCAT CCTTTTCATG CTCGACAAGG ACGAGTTTGA CGCCGAGTTT
GGAGATGGCG AGGAGCCCAA CAAGACACCA GAAGAGGAAT CTGAAGATTC TGAAGGGGAT
GAGGAGAGCG GTAGTGCGGC AGATGACGCA GAGATCTCCA GTAATGCCGG GGGAGGTAGT
GCCAGGGGCG CCAAGGGTGA AAAGAGACAC GCCGCAGACT TGCGTAAGAG GTTGCTCAAG
CAAGCTGCTG GGGATAATGT GAGCCGAGAA TTATCGGTGA CCACTACCGG CCCTACTGAG
GATGGCCAGC TGCAACCATC TACGGAGCCT CTTTCTGGTG AGGTCACCCC ACTGACAGAG
AATGGCGAGC GCGCCGATAC CCCCTTGCCC GTTCCTGCCG ATCCCGAGGA AGTGGCGGAA
GCGGTTGAAA AGGATAAAGC CGGGGCAGAG GCCAGCGAGC AGACGTGGGT CAAGATTGAC
GGCGTGGCCA CGGAAAGTCA GCCCATGTCG GGGACAAGTT CAGTCAATGG GGAAAAGGAA
AAGGAGCAAA GTGTAAAGGC GAAGAGAAAA GGCAACTTTT TCGCCAACAG CCATTTCTAT
GTCCTCTCGC GGTATCTTCA GGTGAGTATC GGTTTGAAAA ATAAAAAAAT AAAAAAACTA
CGGTGGCTGA TTTCGAAATT CCAAGATGCT TTACTCTCGT CTCATGACTT GCAAGACCAT
CGCGTCCAAA CTCGCCAAGG AGAACCGACG TCCCGTTAAC CCGCTCGCTC TCAAACTTGG
TCTCGTTGAC CCTGTGACGC AGTACTTTGG TATTCTCCAA GGCGATAACC CTGCCGAACA
TTACTACTCT CATCTGCTGA GCTTGTTGGA GAGGTATTTC GACAATGAGA TTGAGTTTGG
AGCGTTTGAG GATGCGTTGA GATTGATGTT CACAAACGAG GCTTACCTGA TGTTCAACTT
GGATAAGGTG ATTGGCGGTA TTGTGAGACA GGTGAGTTTC AACATCATTT CTGTTAACAC
ACAGACCAAA AGCGCTGATT TGAATTCAGA TTCAAACGAT TGTTGGCGAC CTCAAGTCTC
AAGAACTCTT TGCCCTGCTT CAGCGTGATC GTGCAAATGC AAGGACTTCG ACCAAGAACC
AGATTGCCTA CAGAATGCAG GCTGAGGGCG TCCTGGGCGG CAACGAGAAT TTGTACAAGA
TTGAATGGGT GAGTTACTTG ATATTTAATA AACGAAAAAA AAGACGCTCA TGATGCATGT
CAAAGTTACC CGGGAAAGAG ACGCTTACTA TCCAGCTTTT GAACGAGGAT GACCGTTCGG
TGGACGATGC CGAAACTACG CAGGAACGAT GGGCTCAATA CATCGAATCC TTTGCCCTGG
TATGTTTCAA TTCCTTTTTC CTTTGTATTA CCCCTGGGAA CCTAAAACCT CTTTTTTCTT
TTTTTAGACC CACCCAACGG AAGGTCTCCT CAAGCGCGTC GACTCGCCCT TCCTCCGACG
AAACATTACA AAGGTCCATT CTCGCGAAGA AGAATTATCT GCTTCTGCCG GTCCGTCTTC
TGCCAAGAAC AATGTGGAAG CAAAGGACGG GCTGGAAATC AAGATTGCGT TGGGCAACTA
TCGAATGTTC TTTACCCCGG GAACAGAGGA TTATTTCCAC CGAGCGTACA AGCATCAACA
AGTGCAGGCT AAACCCCGAT CTCAAAAGTC TGTGGAGGGT GTCGCTGCTC CTGAACCTGA
ACCTGCTCCT GATTCTGAAC CTGATTCTGA ACCTGTTCCT GCCCCTGCTC CTGTTGCTCC
TGCTTCTGCT CCTGATTCTG AATCCGCTCC TGCCCCTGCT CCTGATTCGG AATCCGCTCC
TGCCCCTGCG CCTGTTGCTC CTGCGGCGGA AGTGCAGGAA AATGATGAGA GCGCAGATGT
GGATGCGGGC GCGGAAGCGG GCGCGGAAAC GGGTGCCGAG CCAAGCACGG TCGTGCCAGA
ATCTGCCGCT ACTACAGCCG AGTAGACACG GAGAAAGAAA GAGAGAAATG TGTCTGGGGA
GTTTGTATTG ATTTTGTTTT TCATCCATTC TTCAAAAGTT ACATGTAAAG CAAATTGAAG
GAGGAGGGGA AAGGGGGCGG GGGTTGAAAG TCTCTTCTTT CTGTTTGTGT TGGCTAGTTT
TGAATGTGGG CAGACGCTGA TGAGTGATGG ATGAGTGGAT GAGTGGATGG ATGAGTGATG
GATGAGTGGA TTGGTATTGC GAGGGGGTGT TCT
|
|---|
| Protein sequence | MKEFKGQVID TPGVIDRVST LFRGHPSLIQ GFNTFLPPGY RIECFGGEGD ASGLITVTTP
AGTVSQIPGN FAAAIDQRER EAREGIQASA AEVTARDSRA GSSAPYPSAT SQGAAPAQPL
PPLNALPSHI PSGPPPFQGA SHTGRQAAAP PPARQAPASQ GPGTLPLPPH AQHPLPPSGP
STPSAAQFLA SGGLSHGAQP APQPQQGGNR APILEFNHAI TFVNKIKTRF NNDPETYKQF
LEILQTYQRD TRDIAEVYEQ VTKLFTNAPD LLDEFKQFLP ENGTGGLGML SGSFMQAAGA
APVVPEKVAG QKRGAAKEGK EMGQKKRRTA ASGVEPATKA TQGKRARAGQ RESPSLEDVE
SGLPALTPQQ QTLASPDEVA FFDKVKKFID DKVVYHEFLK LINLFVQDMI DTKTLLDRAQ
LFIGDAPEVW ATFQRVVGVD SEGRIPPNPA SIQGGYGFGG MIGIDNLMVE NTPMLDRVKP
DMNLASANQV GPSYRQLPRS EINLQCTGRD AMCWEVLNDE WVAHPTWNAE DVAPFVSHRK
NQFEDNLHKS EEERHEYDYH IEANLRTIAL LEPLNNKIQT MEPEERANFN LKAGLGGQSK
SIYQRIIKKV YGKELGPDVI RALHDNPIVA LPIVLERLKA KDEEWKRAQR EWNRLWREQD
AKNFYKALDY QHSGTKATDK KKVAPAKTLI NEIEARKAEQ LNQRSALVDF RVWRAKPQME
FEFTDMDVLK DSMKLIISYL DRMQSNSLSS ADQVKVESFL RDFVPILFML DKDEFDAEFG
DGEEPNKTPE EESEDSEGDE ESGSAADDAE ISSNAGGGSA RGAKGEKRHA ADLRKRLLKQ
AAGDNVSREL SVTTTGPTED GQLQPSTEPL SGEVTPLTEN GERADTPLPV PADPEEVAEA
VEKDKAGAEA SEQTWVKIDG VATESQPMSG TSSVNGEKEK EQSVKAKRKG NFFANSHFYV
LSRYLQMLYS RLMTCKTIAS KLAKENRRPV NPLALKLGLV DPVTQYFGIL QGDNPAEHYY
SHLLSLLERY FDNEIEFGAF EDALRLMFTN EAYLMFNLDK VIGGIVRQIQ TIVGDLKSQE
LFALLQRDRA NARTSTKNQI AYRMQAEGVL GGNENLYKIE WLPGKETLTI QLLNEDDRSV
DDAETTQERW AQYIESFALT HPTEGLLKRV DSPFLRRNIT KVHSREEELS ASAGPSSAKN
NVEAKDGLEI KIALGNYRMF FTPGTEDYFH RAYKHQQVQA KPRSQKSVEG VAAPEPEPAP
DSEPDSEPVP APAPVAPASA PDSESAPAPA PDSESAPAPA PVAPAAEVQE NDESADVDAG
AEAGAETGAE PSTVVPESAA TTAE
|
|---|
| |