Gene CNC05820 details

Gene Information

• Locus tag: CNC05820
• ID: 3256439
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006685
• Strand: -
• Start bp: 1725553
• End bp: 1727578
• Gene Length: 2026 bp
• Protein Length: 533 aa
• GC content: 49%
• IMG OID: 638255803
• Product: tRNA-intron endonuclease, putative
• Protein accession: XP_569802
• Protein GI: 58265292
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1676] tRNA splicing endonuclease

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCATCTCGTT TCCTTGTACG CCATGGCCCA ACAGCAACCG CAGTTGAAAC TTCCACCGAG 
GGCCCGATAC GCAGCCAATA ACCGTAAATA CGGCACACCT CTGCCTATCC TATTCCCCTC 
TTCCTCCTCC GCATCTTCCA AATCCATCCT CACATCTTTC CTTCCGTCTC TATCCTCTGC 
TAGAGTTGAA ATCCAGCATA TCACAGGCGA ATATGATCCA ACTACAGGAA GTGTATGGAT 
AACAGACCCG AAAATGATGG ATTTGGCTTT TCAAAAAGGT TTCTTTGGGA AAGGTAGCCT 
GAGTAGGAGT GAACCGAGTT GGCGGTCGAG GAGGATTGGA TTGTTGAAAG GTGGTGATAG 
TAAGCTCTAT TCATTTCCTT TGGTCCAACC TAGGATTAAA TCAGATTGGA AGGAGGGATA 
AAGACTAACC AGGAGTTTTG CTTGTTCAAT ATGCAGCTCT AGCGGCAGAG CAAATGCGCG 
AGAAGAGGCG ATTAGAGCGT AAGCAATTCA AGATTGATAG GGCGCAAGCA ATGCTGGATG 
CGGCCAAAAA GGCGGAAGCC ATCGTAGCGG CTGCAAAATC TCAACCGGAA CCGAAAGCGC 
AATCTCAACT TCAACCTGGT GATAACGAAG GGGACGATGT AGAAGATGGC GAAGGAGAAG 
GGGACGAAGC AGACGTCTCG CTCGTGGTCA CTCCCGATAA TGAGGTCGAC TTGGAGGGAG 
AAGCGGAAAC ACAATCACAA TTACCAGCCG GGGGAGAAGC ATTGGCCAGC CAAAGCCAAA 
TCGAGATTGA TCCACTCAGC TTGACGCCGC AGACGTTCCT TGTCCGACCG ACAAGGCCGG 
ATGCGAATCG GAATAGGGGG AGAAATGCTT TTCGTCGGCG ACCCCCTCAA TCTCAGGCTC 
AAGCTCAGGT TCAGGACAAT ACTGATACAT CTGTGGCCAC TCCCGCCGTT GTTACCGCAC 
CCTCGACCGA ACAAACTACC CAAGCCCCCG CCGACGCTGA CGTCGATATG GAAGCCGAAG 
AGGACCTATT TGACGAATCC CTCGTTGAAG AGATGGAATA TCTCCAACTC TCCATCGAAG 
AATCCCTCTT CCTCTCCCTA GCCATCGGGG TGCTTCGTGT GTACGATCCT TCCACTGGCA 
TGTACCTCAC CCCGACATCG AACTCTGCGG ATGCAGGCGA GCTATTGAAA TTGCTCCTCC 
CTAGGCCCTC ACCGTCTTCA CCTCTTTCTG CCCAATTGTC TGTCTCTGAG GGTAAAGGAG 
CACCGTTATT GCCGGATAAC CCTGCACTAG TTAGTTATGC GGTGTACCAC CATTTCAGAA 
GTCTGGGCTG GGTTGTGAAG GATGGCATCA AGTTCTGTGT AGATTGGCTT TTGTACCGCC 
GAGGACCAGT GTTTTCCCAT TCTGCGTGAG TTGTCTCAGA TTCTTTCAGA TAAAAAAAGT 
TGGAAGCTGA TTTATTCTGA TCGGTACACC TCTTTGGGTA ATCGCATATA TCTATGATTT 
AGTTTCGCGT GCGTTATCAT CCCTGTGTAT GCTGATACGC ATGACCAAGC GGTTTCACCG 
TATGGGGGGG AGGATTGGTA TGAAGAAAAG ATGAGTTGGA AGTGGATGAA CACCGTTATC 
AGGGTGAATG CGCTCGTACA AAAGGTATGT TTCTCTGTTT TCACGTCTCC CTCCATCCAC 
CATTCATACC TCTCCTCACC GTCCAATACA TTGCATTTTG AAAAAAAGCT AATCTGATCA 
CCACTCTAAA AACAAATAGA ACGTCATCGC AGTTTATATC ACTATACCGC CTATTTCTTC 
CTTCCCATCC AACTTGAAGT TAGCGGATGG CACCCTCGAT CCAAAGAAGA ATGATCTCAA 
GAGTCTGTTA AAGAGCTATA CCATTCGAGA AGTAGCGCTT GTACGTTTTT TCTTCTTCCT 
CCCCGTCCTG TTAGCTCGTG TATGATATTT CCCATGGATT GAGCTGACGA TGTCTCTTGT 
CTTATGTAGA CGAGGTTTGG AGCTACAAGA CGACGTGATT AGAATG 

 

Protein sequence

MAQQQPQLKL PPRARYAANN RKYGTPLPIL FPSSSSASSK SILTSFLPSL SSARVEIQHI 
TGEYDPTTGS VWITDPKMMD LAFQKGFFGK GSLSRSEPSW RSRRIGLLKG GDTLAAEQMR 
EKRRLERKQF KIDRAQAMLD AAKKAEAIVA AAKSQPEPKA QSQLQPGDNE GDDVEDGEGE 
GDEADVSLVV TPDNEVDLEG EAETQSQLPA GGEALASQSQ IEIDPLSLTP QTFLVRPTRP 
DANRNRGRNA FRRRPPQSQA QAQVQDNTDT SVATPAVVTA PSTEQTTQAP ADADVDMEAE 
EDLFDESLVE EMEYLQLSIE ESLFLSLAIG VLRVYDPSTG MYLTPTSNSA DAGELLKLLL 
PRPSPSSPLS AQLSVSEGKG APLLPDNPAL VSYAVYHHFR SLGWVVKDGI KFCVDWLLYR 
RGPVFSHSAF ACVIIPVYAD THDQAVSPYG GEDWYEEKMS WKWMNTVIRV NALVQKNVIA 
VYITIPPISS FPSNLKLADG TLDPKKNDLK SLLKSYTIRE VALTRFGATR RRD