Gene CNC05660 details

Gene Information

• Locus tag: CNC05660
• ID: 3256402
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006685
• Strand: +
• Start bp: 1681631
• End bp: 1683704
• Gene Length: 2074 bp
• Protein Length: 542 aa
• GC content: 49%
• IMG OID: 638255786
• Product: farnesyl-diphosphate farnesyltransferase, putative
• Protein accession: XP_569783
• Protein GI: 58265254
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1562] Phytoene/squalene synthetase
• TIGRFAM ID: [TIGR01559] farnesyl-diphosphate farnesyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.148096
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTCGC GTCCTGCTTC CGCCCGTCTG CACAACATTC ATACTCCTTC ACTCTCTATA 
CAGCCCACAT CCCATCTTTT CTTTGTATAC ATCACAAAAA TGGGCATAGT AAACAATATT 
GTGACGGGTG AGTACACAGC ATCTCATTAG TGACTCACAG CTGATCCACT CTCACAGGCG 
TCACCCACCC CGTCAGTCTT CTCCCACCCA GGCTCATTTA TAATGATCAC TGACCCCAAA 
GCGTGACATT TTGCAGATGG AGCTTCGGGC CATTGTCAAT TTTGCCATTT GGCACGACAC 
TAGGGATATC ACTGATACTG TCGAGCTGCC GACGACCCAT TATGACCGAC CGACCATGCG 
AAAATGCTGG GATTTCCTCG ATTTGACCAG TAGGAGTTTT GCAAGGGTCA TCAGGGAGCT 
GGAAGGAGAA CTTGCCAGGA CTGTAAGGCT TTTTCTCATT GCCTCTCTTT GGCAATCAAC 
TGGGACTATC TTGGCTAACG ATCTGCAGGT TTGTCTGTTC TATCTTGTGC TCCGTGCACT 
GGACACCGTC GAGGATGACA TGACCATCCC CAACGATGTA AAGATTCCTC TTCTTCGCGC 
GATGCACACC AAGCTTTACG AGCCTGGATG GACATTCAAG GAGTCAAAGG AAAAGGACAA 
GATTGTCTTG GAGGAGTTCG ACGCTATTCA AACAGAGTTT TCTTTGCTCG ACCACAAGTA 
CGTCCATAAT GCCTGTAGGC TATTGGGGCG GGGAGCTGAC CGCATCGGCT CAGGTACCAG 
ACTGTCATTG CCGATATTTG CAAGAAGATG GGTGCTGGTA TGGCCGACTT TGCCGCCCTT 
GCTACCCCCG GGAAACCTGT AGCTGAAATC AACTCCATTG CCGACTACGA CCTTTACTGT 
CACTACGTCG CTGGTCTCGT CGGCGAAGGT CTTTCTGGTT TGTTCGCTGC CTCTGGCAAG 
GAACGCTCTT TTATCGCCGA TCAACTTACT CTTTCCAACT CTATGGGCCT CCTTCTCCAG 
AAGACTAACA TCTACCGTGA CTTGCACGAG GACGTTATCG ACGGCCGAGG CTTTTGGCCT 
CGGGCCATCT GGTCAAAGTA TGGTTTCAAC TCTATGAAGG AGTTGATTGA CCCTGAAAGG 
GAGACTGAGG CAATGTGGGC AGCGAGCGAA ATGGTGCTCG ATGCGTTGAG ACATGCTACG 
GACGCTTTGG ACTACTTGAC GCTGTTGAGG TGCCAGAGTG TGTTCAACTT CGTGGCGATC 
CCTGCTGTCA TGGCCATTGC GACTTTGGAG AGGACATTCA TGAACAAGAA GATCTTGAAA 
GAAAATGTGA AGATCAGGAA GGGAGAAACT CTCAGGGTAT GTTAATTCTT TTTTTTTTGC 
TTTATGTCGG CTGACCAAAC ACAGCTGATC ATGCGAGCAA TGAACCCTCG TGACGTGTCT 
TACATTTTCC GAGAGTACGC CCGCAAGATT CACGCGAAAG TGCACAAAGA CGACCCCAAC 
CTCCTCAAAC TTTCCATTGC TTGTGGCAAG GCAAGTTATT CGCTGTCTCG ACCTTCCATT 
GTACTGACGA TCAGGTTAGA TTGAGCAATG GGCTGAACAC CACTACCCCT CATTTATCCA 
GATCGGCAAC GCCGCAGGCA ATGGCGTCCA GTCTGCCATT GATCCCGTTA GTAACGATGC 
ACGTGCAGCC TTATTCACGC GTCTCGCTAA GGAGGCACAA GAGGCTGCGA TCAAGGCCCG 
TCAAGAAAAG TTCATGGCCG ACCTTCGCGC CAAGGGGCTC ATCAAGGAGA AGAGCGGTGA 
AACTGATGGT GATGAAGAGG CCAAGAAGCG ATACGAGGCG ATTCAAAATG AACAGGCCGT 
ATCTTGGCTC ATGATCATTG GTGTCATTGT CGGTATGTTG GCATTAATGG CTGCTATGGG 
AGGTATTGTT GTTTGGGTTA TTCTGACAGT GTACGATGAG GTGAGTTGTT GTTCCCATGG 
GTTGGTTATT ATGCTAACGA TGACCAACAG TAATTGGGAA ATTTGAAAGA AGATAATGGG 
TTGTGGATCT ATATGTTTTA TGGGATACCT CTAT 

 

Protein sequence

MRSRPASARL HNIHTPSLSI QPTSHLFFVY ITKMGIVNNI VTGVTHPMEL RAIVNFAIWH 
DTRDITDTVE LPTTHYDRPT MRKCWDFLDL TSRSFARVIR ELEGELARTV CLFYLVLRAL 
DTVEDDMTIP NDVKIPLLRA MHTKLYEPGW TFKESKEKDK IVLEEFDAIQ TEFSLLDHKY 
QTVIADICKK MGAGMADFAA LATPGKPVAE INSIADYDLY CHYVAGLVGE GLSGLFAASG 
KERSFIADQL TLSNSMGLLL QKTNIYRDLH EDVIDGRGFW PRAIWSKYGF NSMKELIDPE 
RETEAMWAAS EMVLDALRHA TDALDYLTLL RCQSVFNFVA IPAVMAIATL ERTFMNKKIL 
KENVKIRKGE TLRLIMRAMN PRDVSYIFRE YARKIHAKVH KDDPNLLKLS IACGKIEQWA 
EHHYPSFIQI GNAAGNGVQS AIDPVSNDAR AALFTRLAKE AQEAAIKARQ EKFMADLRAK 
GLIKEKSGET DGDEEAKKRY EAIQNEQAVS WLMIIGVIVG MLALMAAMGG IVVWVILTVY 
DE