Gene CNC05080 details

Gene Information

• Locus tag: CNC05080
• ID: 3256225
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006685
• Strand: +
• Start bp: 1525474
• End bp: 1527507
• Gene Length: 2034 bp
• Protein Length: 498 aa
• GC content: 49%
• IMG OID: 638255726
• Product: hydroxymethylglutaryl-CoA synthase, putative
• Protein accession: XP_569805
• Protein GI: 58265298
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG3425] 3-hydroxy-3-methylglutaryl CoA synthase
• TIGRFAM ID: [TIGR01833] 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.0146937
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCCCCAAACC CTCTTTAAAA AGCAATCTGT CCACCTCCTG AATCCACGTA ACCAAACCAT 
ACTTAGCAAA AATGACCCAA TTTGATATAC CCAGCAGGCC TTCCAACGTC GGCATCCACG 
CCATCGAGAT GTACTTCCCC AAGAGGGTAG GTCCACATGC TCCATGTCCT ATTGCCGGTC 
GCCGTGCTAA TATGAGGCAG TGCATCTCCG AGGATGAGCT CGAAGACTTT GACGGTGTAA 
GCAAGGGTAG GTCATTGTGA ACAGCCAATT TCTGAGCGTG TACTGACTGC AGGCTAGGCA 
AATACACTCT TGGTCTTGGA CAAAAATACA TGGCTTTCAC GGATGACAAG TAGGACAATG 
TCTTTGACGA TTGAATTAGG ATATCTGACG AAATTTTGAC AGGGAGGACA TCAACTCTCT 
TGCCTTGACT GTCGTTTCGA ACCTTTTGAA GAAGTACAAC ATTGACCCTC GTTCAATCGG 
TCGTCTCGAC GTCGGTACAG AGACAATCAT CGACAAGTCC AAATCTACCA AGACCCTCTT 
GATGGACCTT TTTGCTGCTT CCGGCAACAC TGATATCGAG GGTATCGACT CTAAAAATGC 
CTGCTATGGT TCAACCGCCG CCCTATTCAA CACTGTCAAC TGGATCCAGT CTGAAAGCTG 
GGACGGCAGG AATGCGATTG TGATGTGCGG TGACATTGCT ATCTACAAGG AGGGAGGTGC 
AAGACCTGTC GGCGGCATGG GCGCTTGTGC CATGTTGATC GGTCCCGATG CGCCTTTGGT 
GCTTGAGCGT GAGTGCAGAA ATCTGTGTAA TGTGTCAAGT CAGTGACGTG ATATGCAGCT 
GTTCACGGCA CTTACATTGC CAACACTTGG GACTTTTACA AGCCTGACCT CACCGCTGAA 
TATGTTGGTC TACTTTCGCT CTCATCTATA CCAAGCTGAC ATTCCAAAGC CCACCGTTGA 
TGGCCCTTGG ACTATTGCCG CTTACCTCGG TGCCCTTGAC AACGCCTACT CTACTTATGT 
CGACAAGGCC GAAAAGTCTC GCGCTCGAGC TGCCAAGAAG CTTTCTCTCG CTAGTGTATC 
CACCAAGGCG TCGGAAATTG CTGATGCTGC TGACAAGTTT GTCAACGGTA TCAATGGCGA 
CATTGAGGGT GTTGCTGTGA ATGGCAACGG GCATGCAAAT GGCGAGAACA AGGATCAGGG 
AATTGCGGCA TTTGACTATG TTTGCTTGCA TAGGTGAGTA GGCTATATGG ATGAAGGATA 
AATCTGACGT TTTATAGTCC GTACGGGAAG CTTGTCCAAA AAGGGCACGC TCGTTTGTTC 
TACAACGTGA GCATATCATG GTCACCTCAT GGGCGCCGCA ACTAACACTT CGTAGGACTA 
CTTGCGCAAT CCCTCCTCTC CTTTATTCGC CAACGTTCCT GAGTCTATTC AATCCTTGGA 
TAAGACAAAA ACATACACCG ACAAGACTGT TGAAAAAGCC TTCATTGGTG TCGCCGCCGA 
ACACTACAAG TCTGCCGTCG TGCCCGGCTC TGACTGTGTT GCGAGATGCG GTAACATGTA 
CACTGCGTCA TTGTACGGCG CATTGGCTAG TGTGATTGCC AGCAGTCCTG AAGGTATCGA 
AGTTGGCAAG CGAATCGGCA TGTACGCATT TGGTTCGGGG TGTGCGGCGT CCTTCTTTGC 
CTTGAGGGTT GCCGGCTCCA CTAAGGAGAT TGCGGAGAAG ATGCAGTTGA AGGAGAGGTT 
GGCGAGCATG GATGTGAGGC CTTGTCAGGA ATATGTGGAT GCGCTCAAGG TAAGTTCTGA 
AATGCTGTGC TGAGGAAGCG ACTCTGACTG TCGTTGTAGC TCCGAGAAGA GAACCACAAT 
GCTGTCAAGT ACACACCGCA GGGGTCTTTG GACAACATCT GGCCCGATGC ATACTATTTG 
GAGGGTGTGG ATGAATTGTA CAGGCGAAAA TATTTGAAAA AGTAGATATA TTAAGCCCGT 
ACGGAGTATG TAGCGTAGGA CATAGACTGA ATGGATGCGA TGTAGCGAAT TGCT 

 

Protein sequence

MTQFDIPSRP SNVGIHAIEM YFPKRCISED ELEDFDGVSK GKYTLGLGQK YMAFTDDKED 
INSLALTVVS NLLKKYNIDP RSIGRLDVGT ETIIDKSKST KTLLMDLFAA SGNTDIEGID 
SKNACYGSTA ALFNTVNWIQ SESWDGRNAI VMCGDIAIYK EGGARPVGGM GACAMLIGPD 
APLVLEPVHG TYIANTWDFY KPDLTAEYPT VDGPWTIAAY LGALDNAYST YVDKAEKSRA 
RAAKKLSLAS VSTKASEIAD AADKFVNGIN GDIEGVAVNG NGHANGENKD QGIAAFDYVC 
LHSPYGKLVQ KGHARLFYND YLRNPSSPLF ANVPESIQSL DKTKTYTDKT VEKAFIGVAA 
EHYKSAVVPG SDCVARCGNM YTASLYGALA SVIASSPEGI EVGKRIGMYA FGSGCAASFF 
ALRVAGSTKE IAEKMQLKER LASMDVRPCQ EYVDALKLRE ENHNAVKYTP QGSLDNIWPD 
AYYLEGVDEL YRRKYLKK