| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC04460 |
|---|
| Symbol | |
|---|
| ID | 3256148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 1352869 |
|---|
| End bp | 1355802 |
|---|
| Gene Length | 2934 bp |
|---|
| Protein Length | 856 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | 638255667 |
|---|
| Product | shk1 kinase-binding protein 1, putative |
|---|
| Protein accession | XP_569696 |
|---|
| Protein GI | 58265080 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.776045 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGTTGACTTG TCCTAAACCT CGTTCGACAT CTCTTTTTCA TCCACATCCA ACATGCCTCG
CCATAAAGTA GCCCTGTACC TCCCGCATCC CCTTCCATCC CTCCCCATAG AGCCTCCCCC
GACTCCCTCT CCTTTGCAGC AAGTCATAGC ATCCACTCTG TCCACAACCG ACTACGACCT
CGTCTCGTTC CCCCTCACAA ATGCTGCATG GCAAGCTCGC TGGGAGAAAC TGTGTCTACG
ACCCATTGAG GAAGAAGGTC TTTCAGAGGC GGAGTTAGAA CGGAGGGCGA TCGAGGAGAA
GAAGGTTGAC CAAGAGGCTG ACATTTGGAG ACGCGACGGA GGGTTGAAAA GGAGCGAGGT
CGTTGTGAGT AGACTGGAAG AGAGCCAGGG GGTGATACCC CTTGCAAGTG AGTGGTTGGA
GCTTGACTCC CCAGACGAAG GTATTCGCTT CGACTCTGAA CTTGTTGGTC TTTTACATCT
TTTGTCTGTG GCATATGACT GGCTGACCAG TTATGCGCGT AGGCCTTGAG AGCAGAGTTC
GCACATGCTC TTTACCTGTC TCTCCCGGTT CTGATCCTTC CTGCGCCGTC GCTGGCTAAT
AGGGAGTACT TACCTTCCTA TGCCAGGGCC ATCTCCAACT TGCTGCAAAT GGGTGGGCAG
AGTGCGGTGA CCAATATATC AATCAGAATC CCGGTGTCAA ACCCATTAGA GCTGATTGCG
CCGGAATCGG TCATGCCAAA TGGATTGCCT GGGTCGCCAT CACCCATCGC TCCTCCTCTT
GCATCTGGCG CACCCCAGAC GGACAAAAAG CATAAACGTC TTTCGTCGCT TTCTACCCGC
CCGCAATCTA TGCAAACTTC ACTTTTTGGC CAGCCTGCAA ACCAAGGCAC AAATCAGAAC
CAGCAGCAAG GAATGAGGAT CACCTCTGGA GCAAGTTCAC TCATGTCTGC TAATACTGCT
TACGGGTCCG TTGCTGGGGT CGGACAAGCC AGTTTAGGCG TCGCAGCTCA TGGAGGAGAC
CTCAGTTCGA CATGGGAAAT GTGGGATTGT ATCAGGACCT TGTGCGGGTA TCACCCGCGA
TTATCAGTTA GTATGTTTAA AATTCTCTTT CCGAGCCCTC TATCTAGCTG TGGACTGATT
TTGTGGAAAG CTCTGGACTT GACAAACCCT CTGCCACCAT CCGCCGGTGC CCTCGCAAGA
TGGTCAGCTG AACCAGTCAA CTATATCTGG TTGCCCGCCT CGTCATTCAT ACCCAATGCC
AAAGGATACC CCGTGTTGAG CAAGGCCTGC CAGGCCTTTA TTCGGGAGAT GGGCAAGCAG
AATCCCACAT ATATTCTTTC CCAGACAACT ATGAAGAGAC ACTCAGCTGG AGGACATAAC
GCCTACCTCC AATACATCAG ACATATCACG TCCACTCCTC AGCCTGGACC TAATGCCCAA
CCGCGCGCAA TCATGGCTCT GCCTGCTGGC GCTTCGGAAA AATTTCAAGA TTATTCCGAC
TATCTACAAG CGCCCCTACA ACCATTGATG GACGATCTTG GGAGCATGAC ATATAATATT
TTTGAAAATG ATCCGGTCAA GTATGCCCAG TATGAGAGTG CCATCACTCA AGCTTTGCTG
GATCTACCAG CGAACAAGAA GCAGTAAGCT ATTATGATCT TATAGAGTCT GCCGCAGACA
GCTGATAGCC CTAAGTGTCG TGACAGTAGT TGGCGCTGGT CGTGGACCCC TTATAGACTG
CACCCTTCGC GCCCTCTTGC ATTCCGGTCG CCAAGCATCC ATCTACGCCG TCGAGAAGAA
TACCAATGCC TTCGTAACTC TGCAGGAACG CAAAGAGCTT GAATGGCGCG ACAAGGTACA
TATTATCAGC GGAGATATGA GGGCAGTCGA TGTTCCCGAA AAGTGTGATA TACTGGTTTC
AGAGCTCTTG GGAAGCTTTG GAGATAATGA ACTGAGTCCT GAGTGCTTAG ATGGAGCATT
GAGATTAATG AAATGTAAGT CAAGAGTCGC TGCTAGCGCG AGGCAGGCCG CTGATGTCTC
TTTTATAGCA ACTGGTGTCT CCATCCCATC CTCTTATACG GCCCATATCG CTCCTCTTTC
GACATCAAAA CTTTATCAAG AAACACATTC TCCTACTCGC GGTCCTTCAT CTGCTGAAAC
GCCCTACGTC GTAATGTTAT CTCAAGTCGA CCCCATTTCG GGTGACAACA ATGTACCTGG
AGTGAGTGCG CGATGCGGCG AAAGAATTCA GCAGTGCTGG CAGTTTGTCC ACCCAAACAG
AGATATTACT GTCGATTCAA ATGGTTAGTC TTTTCCCTTC TATGTATAAA TAGAACTTCT
TATCCTTATG ATGTTGTTAG GAGTACCCCT TTCAAATTCA CACAATGCTC GTGCGAGCAC
CCACACATTT CACATTCCTC ATGCGGCTAC TCTTCACGGG TTTGGTGGCT ATTTCGAGGC
TCATCTTTAC GGTGATGTTG GCCTTTCAAT TCACCCCGAG AACGCACACG CCGTATCACC
AGATTTGACC AGTTGGTTCC CTCTTTTCTT CCCACTGAAA GAACCAATGT ACCTTCCAAG
TGGAGCAGAA TTGCAAGTGA ACTTATGGAG AATGGGCGAT GGAAAAGGAA AGAAGGTATG
GTACGAGTGG GCGGTGGAGA GCTATTTGCC GGTAGTGCAA TCAGTATCTT CAGGCCCAGG
TGCCGCGACC GTCCCAGGGT CAAGGAATGT CAGTTCGGCG TCTGCATCTG GGATTGGGTT
CGGTGGACAA CCTAGCCCTT TGATGGACGC ACAGTTCTCG CCGGGAACGG GACACATGGG
CTTGTCAGGT GAACTAGGGA GGGTGAAGAT TGGGCAATCC ACTCTGCATA ATCCAGGAGG
GATTCATTCT TGGGTTGGCC TCTAGACGGT ATAGAGGACC TATGGACTTT CAAA
|
|---|
| Protein sequence | MPRHKVALYL PHPLPSLPIE PPPTPSPLQQ VIASTLSTTD YDLVSFPLTN AAWQARWEKL
CLRPIEEEGL SEAELERRAI EEKKVDQEAD IWRRDGGLKR SEVVVSRLEE SQGVIPLASE
WLELDSPDEG IRFDSELALR AEFAHALYLS LPVLILPAPS LANREYLPSY ARAISNLLQM
GGQSAVTNIS IRIPVSNPLE LIAPESVMPN GLPGSPSPIA PPLASGAPQT DKKHKRLSSL
STRPQSMQTS LFGQPANQGT NQNQQQGMRI TSGASSLMSA NTAYGSVAGV GQASLGVAAH
GGDLSSTWEM WDCIRTLCGY HPRLSVTLDL TNPLPPSAGA LARWSAEPVN YIWLPASSFI
PNAKGYPVLS KACQAFIREM GKQNPTYILS QTTMKRHSAG GHNAYLQYIR HITSTPQPGP
NAQPRAIMAL PAGASEKFQD YSDYLQAPLQ PLMDDLGSMT YNIFENDPVK YAQYESAITQ
ALLDLPANKK HVVTVVGAGR GPLIDCTLRA LLHSGRQASI YAVEKNTNAF VTLQERKELE
WRDKVHIISG DMRAVDVPEK CDILVSELLG SFGDNELSPE CLDGALRLMK STGVSIPSSY
TAHIAPLSTS KLYQETHSPT RGPSSAETPY VVMLSQVDPI SGDNNVPGVS ARCGERIQQC
WQFVHPNRDI TVDSNGVPLS NSHNARASTH TFHIPHAATL HGFGGYFEAH LYGDVGLSIH
PENAHAVSPD LTSWFPLFFP LKEPMYLPSG AELQVNLWRM GDGKGKKVWY EWAVESYLPV
VQSVSSGPGA ATVPGSRNVS SASASGIGFG GQPSPLMDAQ FSPGTGHMGL SGELGRVKIG
QSTLHNPGGI HSWVGL
|
|---|
| |