| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC04340 |
|---|
| Symbol | |
|---|
| ID | 3256613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | + |
|---|
| Start bp | 1316449 |
|---|
| End bp | 1318043 |
|---|
| Gene Length | 1595 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638255655 |
|---|
| Product | Rab/GTPase, putative |
|---|
| Protein accession | XP_569689 |
|---|
| Protein GI | 58265066 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1100] GTPase SAR1 and related small G proteins |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.260268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACAACACAG TCATCCTCAA ATGTCAGGAC CAGCCGGACA ACACTACGAC TTGTACGTCT
TTCCCCTGCC CGATTCCGCC CAGTACTTGT CGAGATTTCA TCCCCAGCGT GTCGATCCAC
CCACAAGCTT GCCATCTCAC ATTGGTTACA CTGCTGACAC ATGCATGCAG TTTAATCAAG
CTCCTCCTTA TCGGTGATTC TGGTGAGTCT AGATACTCTT GAGGACGTCG GAGGACGGTC
CTGTGTGGAG TGGAATTAGA TACATTGGCG ACGGATCACT GACGGATGGT TGGTGCTTGT
TGGCGATGGG TACAACCACT CTTGATAGGT GTCGGCAAGT CATGTCTCCT CTTGCGATTC
TGTGAGGATT CTTGGACTCC TTCTTTCATC ACCACTATCG GTAAGTCCTT CAGCTTGTTC
CATCCCCATA TTTTGCTAGT AAATCGGTTG GGGATGAGCC GAGCTTATCT GGGAGATCAG
GTATTGACTT TAAGATCCGA ACAATCGAGC TCGATGGGAA GCGAATCAAG TTGCAGATTG
TAAGTTGCCG TTTCCATTCT TATTTATATC AAACAGTAGT GCTGACTGGT CATGCATGTA
GTGGGATACT GCTGGTAAGC ATATCCGTCC AGTTTGCCGC AGCAGCTGGC ATGCATGGGG
CTGTTACTAA TTCCGCAATT CGTCAGGGCA AGAACGTTTC CGAACCATCA CAACTGCTTA
CTACAGAGGT GCCATGGGTA TCTTGCTGGT CTATGACGTT ACAGATGAAA AGTCCTTTAA
CAGTGAGTTA CACCTTCAAA CCTCGGACCA TTGATTGCAG CCCTTTTTTT TTACATGGCA
CTGAACCGTC TCGTTAGACA TCCGAACCTG GCTCTCCAAC ATTGAACAAC ATGCATCGCC
CGGCGTGAAC AAGATTCTTA TCGGTAACAA GTGCGACTGG GAGGAGAAGC GATCTGTTAC
GATTGAGCAA GGACGTGCGC TTGCCGACGA GTTTGGACTG CGTTTCTTGG AGACTAGTGC
GAAAGCAAAC GAAGGTGTGG AGGAGGCATT TTTCACATTG GCCAGGTACG TCATGTAGGC
AGGTGGACAT GATGGGGGTC AGACAGCTAA TGCGTCATGT TGGATTGTAG AGATATCAAG
ACTCGTTTGA TTGATTCTCA ACCCCAAGAA GCCGCCCCTG TTCAACTTGG TGCGGACCGT
AACGGTGTGA ATGTCAACAA GCAAAGCGAT TCTTCTTCTG GCGGGTGTTG CTAACCGCAA
TGGATATGAA TTCTGTATTC GTCGTCCTTT TGGCAGCAAA GGAGCGGCAG TCAATGAGCA
CGTGTATTGC CTTGATATAA ATGACCATGG ATGCCCGTCA ACATACAGTT ATCCTATCAT
AGTTTTTTTT TTTAACTTTA CCGAAGGTCT TTCAGTAGTC CTTTTTTTCT TCCTTCTCCG
TTTTGACCTA GCTTTTTTTT CTCGCGAGAT TCTATGTATT GTACGTGACA AATATGCTTT
TTCTATCCAG ATACACGCAC ATCGAATAGT CTTTTTTTTC CCCTTCTTTT CGTGAAGCAA
TCCGCTTATA CCCAATGCAT GAAGATTATT CCCTA
|
|---|
| Protein sequence | MSGPAGQHYD FLIKLLLIGD SGVGKSCLLL RFCEDSWTPS FITTIGIDFK IRTIELDGKR
IKLQIWDTAG QERFRTITTA YYRGAMGILL VYDVTDEKSF NNIRTWLSNI EQHASPGVNK
ILIGNKCDWE EKRSVTIEQG RALADEFGLR FLETSAKANE GVEEAFFTLA RDIKTRLIDS
QPQEAAPVQL GADRNGVNVN KQSDSSSGGC C
|
|---|
| |