| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC02830 |
|---|
| Symbol | |
|---|
| ID | 3256361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | + |
|---|
| Start bp | 918605 |
|---|
| End bp | 921240 |
|---|
| Gene Length | 2636 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | |
|---|
| GC content | 46% |
|---|
| IMG OID | 638255505 |
|---|
| Product | DNA repair and recombination protein pif1, mitochondrial precursor, putative |
|---|
| Protein accession | XP_569577 |
|---|
| Protein GI | 58264842 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.577209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATTC TTACGGCCCG CACACTTTCA TCGTCCAATC CCAACAACAC ATCAAAGGGG
ACTCTTTCTC GCGTAACCTC TTTCAAACGC AGTTGGGGAG AGGAGGATGG ACCAGAGTCT
AGTCAACTGG ATTGGAGTCC AAGCCCAGAA ATGTAAGTAC AACAAGATGA GGTAACCATA
TCTGACGCAT CTTCTTTTCC AGCGTCCAAA GAAAAGGCAA TATACTGCCA TCTTCAGGCC
CTTTGCAGTC CACAACAACT TCGCCCAGTC TTCCAGAATC TGCCGCAAAA GAAATTGCGT
CTCAAAGACG TCGCAAAGCT ATTCTTGCTG CATTAAATCA AAACAAAGAG ACCGTATATG
CCTCTCCAGT TCTCGACTGG CGTTCAGGGC AAACATCATC TACTTTTGCC TCGCCTCAAG
ACATCAATTG TGATATTTCA GTTCCATCCG TCGCAACTCA TTGCCCTGGC TCTTCCATAC
GTCATGTGAA CCAAACACTC CCGTCTTTGC CAAAACGGCC GCTACCTTGG GAGGGAGATC
AGAAGTAAGC CGCCATATAA CGCGACCCTA ATTTTTTGCT TATGCGTAGT GCAGGGCTCG
CAAGAAAGTT TACACCCAAA CCAGTTTGAC GCCAAAGGAA AACGCTCAGC CCAAATCGAC
AAGCTCTGCC CTCAACATCA AACAGCGTGT GACCCTTAGC GAAGAACAGC AGAAGGTCTT
GAGTCTGGTA GTACAGCAGC AGAAAAACGT GTTTTTCACA GGCAGTGCAG GTATGTCGTG
TCTCATCACT GGCCCATGGA GCTTATTGTT TTAGGTACCG GTAAATCTGT TCTACTACGG
GAAATTATCC ACAGTTTACG AAACAAATAC GCCAGAAACC CAGATGCTGT TGCAGTAACA
GCCTCGACAG GAATTGCAGC TTGCAACATC GGTGGAGTGA CCTTACATTC ATTTGGTGGC
GTTGGGCTTG CAACAGATAC GCCAGAAATA CTTCTCAGGA AGCTCAAAAT GAACAAAAAG
GCATCAGGAA GATGGACGAA AACAAAGGTA TTAATTATCG ACGAAGGTAA GCACCCAACT
GCCTTATATG ATGCTATTAC GGCTGGTTGA CTTTTACCAG TGTCTATGGT AGATGGGGCT
ATGTTTGACA AATTTTGCAA ACTCGGGCAA CTAATTCGTA AAAATAGCAA ACCTTGGGGA
GGTATACAAA TCATTGTGAC GGGGGACTTC TTTCAATTAC CTCCTGTGAC TAAGAACGGA
GGTATGCCCA AATTTGCTTT CGAAGCGGAG ATGTGGGATG AGACAATTCA TCTATCTGTG
AATCTAACTA AGGTATTCCG TCAGAAGGAC CAAAGTGAGC ATTTGCGTTT GCTCCCAGCG
TAATTTCGCT CATAGACATA TAGGATTCGT TGACATGCTC AACGAGATGC GTTTTGGTCG
CCTTTCTAAT GAATCAATCA TCGCCTTCAA ATCACTTGCA CGTCCCCTCA AATTTAATGA
TGGAATTGAA CCCACCGCCC TCTTCCCTAG ACGCGAAGAT GTTGACCGCG CCAATTTATC
ACGCCTCAAT CAGCTTGATT CCGTCGGCTT CACTTACCAT TCTATCGATG GGGGCAGTGC
AGAAGCAAAT CAACGCGAGA AACTCCTTTC CAATTTCATG GCACCCAAAA TAATTGAACT
CAAGGAGAAC GCACAGGTCA TGTTAGTCAA AAATCTAGAC GAGACCCTTG TAAATGGTTC
AATGGGCAAA GTGATTGGAT TCACTTACAA AAATATGTTC CAATGCGACG ATTTGGGCAA
ATGGACACCT GACGCTGACC TGAAAGATTT GGAAGAAGAG GATAAGATGA AAAGTTTAGC
AGTCAGACAG GCATTGAGAG ATAAGTACCA AGCCAAAGGG GCAAATCCGT TGCCGGTAGT
GCGTTTTAAG GTGCCTGGAG GCGGCACAAG GGACGTTCTG ATGGAAATGG ATGTCTTTAA
GGCGGAACTG CCAAATGGGG AAGTGCAGGC GTCGCGATCA CAGGTGAGGC TCAGTCATGG
CCGGTCAAAT CCACGTATTC ACGAAGCTGA TGCAATGCAA TCATGGAAGT TGCCACTGAT
CCTTGCGTGG GCCATGTCCA TACACAAATC GCAAGGACAA ACCCTTGATC GTGTGAGAGT
CGACCTCGGC AAGGTCTTTG AAAAGGGCCA AGCGTATGTG GCCCTTTCCC GAGCAACATC
TCTGGAAGGA TTACAGGTTA CAGGATTTAC GGCAGAAAAG GTAAGCCGCC ACCGTACATT
CTCCATTGGT TGACAATTGA CTGACAATCG GTAGGTGATG GCCCATAAGA AGGTTGCCGT
CTGGTCCAGC ACTCTCAAGG ATCTGAATCT CGTATAATTT CACCTTTTAT GTCTGTATGT
CAAACTGGTA TTACAATTCA CTCGTTATCC CTTTCATTTG GCTACTTTTC ATCGTAATCT
ATGAGTTTTG TGTACACGCT GTGCATGCTG TCTCAGTGCA GTGCTGCTGC TGCTCTTTTG
CGGCGGAATC CCAATGGTCA TTATTTATTT GGCCTCGACA GTGGATTATG TGGTTCAACT
CGCGATGAAA GACGAGACTG CATAAGTCCA GTACCCTATC ACGTTGCTCT AGGCTA
|
|---|
| Protein sequence | MPILTARTLS SSNPNNTSKG TLSRVTSFKR SWGEEDGPES SQLDWSPSPE IVQRKGNILP
SSGPLQSTTT SPSLPESAAK EIASQRRRKA ILAALNQNKE TVYASPVLDW RSGQTSSTFA
SPQDINCDIS VPSVATHCPG SSIRHVNQTL PSLPKRPLPW EGDQKARKKV YTQTSLTPKE
NAQPKSTSSA LNIKQRVTLS EEQQKVLSLV VQQQKNVFFT GSAGTGKSVL LREIIHSLRN
KYARNPDAVA VTASTGIAAC NIGGVTLHSF GGVGLATDTP EILLRKLKMN KKASGRWTKT
KVLIIDEVSM VDGAMFDKFC KLGQLIRKNS KPWGGIQIIV TGDFFQLPPV TKNGGMPKFA
FEAEMWDETI HLSVNLTKVF RQKDQRFVDM LNEMRFGRLS NESIIAFKSL ARPLKFNDGI
EPTALFPRRE DVDRANLSRL NQLDSVGFTY HSIDGGSAEA NQREKLLSNF MAPKIIELKE
NAQVMLVKNL DETLVNGSMG KVIGFTYKNM FQCDDLGKWT PDADLKDLEE EDKMKSLAVR
QALRDKYQAK GANPLPVVRF KVPGGGTRDV LMEMDVFKAE LPNGEVQASR SQLPLILAWA
MSIHKSQGQT LDRVRVDLGK VFEKGQAYVA LSRATSLEGL QVTGFTAEKV MAHKKVAVWS
STLKDLNLV
|
|---|
| |