| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC02060 |
|---|
| Symbol | |
|---|
| ID | 3256683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 576439 |
|---|
| End bp | 579436 |
|---|
| Gene Length | 2998 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638255428 |
|---|
| Product | histone deacetylase 1-1 (hd1), putative |
|---|
| Protein accession | XP_569971 |
|---|
| Protein GI | 58265630 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.300789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTCGGTTCG TCTCTTGCAA CTGCCATCAT CCTTCGTTCT GGAATACCGT CCAGCACCCC
ACAACAGCCC TTCTGTATAA TTCACAGAAA TAAACGCCAC CATGTCCTCG GCTGCTATTC
ATCCTCCTCT CGACTTCTCG CCCGTTCGCC CAGATGGCCG GCGCGTAGCT TACTACTATG
ACCACGACGT AGGCAACTAC CATTTTGGAC TCGGCCATCC AATGAAGCCT CATCGGATTA
GAATGACACA TAACCTTGTA GTTAACTATG GACTGGCCGA CGACTATGAA GCTATGGAGG
AAGAGGGCAG AAGAAAGGTG AATGCTCGGA TGGGGATGGA GAATGATGAA GCAAGATGGG
TGAATGCCGA GATGCGAGGG TCGAGAGCAA AACGGATGCA GATCTTTGTG AGTTTAATCA
GTACTTTATT AAGTGTCTTC TTGGTCTAGG CATGAAATCA AGCGTAAAAG GGCTGACAGT
GAATCCGTCT GCAGAGACCT CGTCGAGCAA CCAAAACAGA TATGACGAGA TTCCATACCG
ATGAGTACAT CGAGCTGCTT GAGAGCGTAC TACCGGAAAA TGCGGATGCT CTCACTGGAA
ATAGGTCAAG AGGTAAGTAA GAAACCAGCT TTATGGATAG CGCCGTCTGA CAAGCCAATA
TCGCTCGATA ACCGAAAGGC TTAACTGGGT CCGATTGTCC GGCAGTCGAA GGTATTTTCG
AATTCAGCTC TATTTCTGCA GGTGGATCCA TTGGTGGGTT TTCTTTGATC TTCATCCAGA
TTGCTTATTC ATAAAAATAT TATCTCAGGT GCTGCTGAGA AGCTCAATGA AGGTATAGCC
GATATCGCAA TCAATTGGGC TGGTGGCCTA CACCACGCCA AAAAAACTGA AGCTAGTGGG
TTTTGTTACG TCAACGATAT TGTCCTAGGA ATCCTCGAAC TTTTGCGGTG CGTTATCTCG
TAGAGATTTT GTTTCCAGTC CCTAACATTT GGCAGAGTTA ACTCGCGGGT GCTCTACATC
GATATCGATG TACATCACGG CGACGGAGTT GAAGAAGCGT TTTACTCTAC AGACAGAGTT
ATGACTTGTT CTTTTCATCT CTTTGGTAAC TTCTTCCCAG GAACTGGGAC TCTCAAGGTG
TTTGCGAACT ACTTCCATTG CACAGCTCAC CGTGCTGATA CAGAGCGCCG CAGGATGTTG
GCCTGGGTAA AGGTAAAGGC TACGCCGTCA ATGTTCCACT GAGAGAAGGT ATCACAGACG
AAGGGTTTCA CAGCATCTTT AAACCTGCAA GTCTAGTATT TTCCGGAGGA TCTGGGGGCG
AAGTTGTTTA CCATAATGAA TAGGTTATTG CCGAAATCAT GGAGCATTAC CGCCCATGTG
TGGTTGTATT GCAAGGCGGA GCGGACAGTA TGTCAGGAGA CAAGTTAGGG AGGTTGAACC
TGTCGGACAA AGGTCGGTCT TCTTAATTGC AAATCAGGTT TCAACAGCTG ATATAACGAA
TAGGGCATGC TGAGTGTGCC AAGTTTTTGA GGACTTTCAG TGTACCATTG ATGTTACTTG
GTGGCGGGGG GTATACGACG TGAGTGTAAA ATATCTACTC GTAGTCCAGT GAGCCTGATG
CAAATGTGGA TTTCAGGAAA AATGTGGCAA GGGCGTGGAC TAGAGAAACG GCTATCGCAT
GTGGACAAGA GCTATCGGAA GATTTACCAA GCAATCAATA GTATGGCATA CCGCTACTGT
CGATTCCCTT ACGCTGACCG ATTTCTGAAG TATGGAATAT TACGGGCCTC GATACAAACT
AGAAGTATTA CCTTCCAACG TTGAAGATTT CAATACACCA GAATATCTCG AGGATCTTAA
GTACGTCTGC CAGGCTTACA CTCACATTAC AGTCTCTGAA GTATCCATCA CACAGGCGCC
AGATTTCCAA CCACTTGAAA AATCTCCCTT TCGCTCCTAG CGCTCAGATG CGACAAATTA
CTGGTAGCAA TGTGAGTCAA GCAGTAGGGC TTAGCAATGA ATGGGAGACA GACGATCCGG
AGGATCAAAT TGATCAGAGA CTCAAAAGTA CGCCGTCCTG CTAAGTCTTC CACCATCCAT
CGCTCACTAA CGCTATAGAA CTGTTCGCAA GTAAGAATCT GAACGGTACC TATACTCAAG
AGAGTGACGC TTTGTTGAGT GACTTAACAA GCATTTCAAG AATTAGACGC CAAGGTGGTC
CCAAAAAACT GCCTAGGTCT TCAGGAACAT GTGGCAGAGC AAGGAAACGA TATCTTGAAG
ATATTGCGAT GGGAGAAGAT CCTTGTTGTC TTCTGCCTGC CATGACCAGC AAAAAAAATG
AGAGAAAAAC GATTGCGAAG AGCGGAAGTT CAGCGCCTCC AACATCAGCG CCAGAATGGC
ACGCACATTT AACCGTGCAT GAAATGAAAA GCAGACCTAG TCTAGGTGAG ATCCTTCAGC
AACCGTCGCC AGGCAGTGAG GACGAATGTG ATCGGAATCG TTGTATCACT GAGGGGTCGC
AGCTACATAT GATAGCGCAG GGAAGGGGAA AAAGGAGTTT CTTTTCGCGC AAAGGTCTGC
CACCCTCAAT TATATCTCCT CAGGCGATAA TAGGAGGATC AACGGTAAAA GTCGACAGGC
TGATCAGAGC GAGGATGGCG GCGGCGACCA ATAATTCTCC GGTAGTGGTG GAATGGGATC
GACAACAGGA GTAATGGACA ATTATGGTTT AATTATGAGT GTTCCGTTAG AAAGGGTTGC
ACGTGTACAT CATTGTCAAC ACTTGTAGTA AGTAATATGT AGTAGGGCAT GAGGTACGTT
GTGGGTAGGG AGCATAACTC GTTTGAAGTG GGCAAGCTAT GATAGTTGTA CTTGGGCGGC
TCAGGCCGAG GGAGAGAGCG GAGTCTATTA TTAATTATCC AAGATTCGAG TGTCTCGGCG
GCGAGGCGAC CTCAAGTTTT CAAAGCCGAT CCGCATTCTA CGTAGCTACT GGCACAGC
|
|---|
| Protein sequence | MSSAAIHPPL DFSPVRPDGR RVAYYYDHDV GNYHFGLGHP MKPHRIRMTH NLVVNYGLAD
DYEAMEEEGR RKVNARMGME NDEARWVNAE MRGSRAKRMQ IFRPRRATKT DMTRFHTDEY
IELLESVLPE NADALTGNRS RGLTGSDCPA VEGIFEFSSI SAGGSIGAAE KLNEGIADIA
INWAGGLHHA KKTEASGFCY VNDIVLGILE LLRVNSRVLY IDIDVHHGDG VEEAFYSTDR
VMTCSFHLFG NFFPGTGTLK DVGLGKGKGY AVNVPLREGI TDEGFHSIFK PVIAEIMEHY
RPCVVVLQGG ADSMSGDKLG RLNLSDKGHA ECAKFLRTFS VPLMLLGGGG YTTKNVARAW
TRETAIACGQ ELSEDLPSNQ YMEYYGPRYK LEVLPSNVED FNTPEYLEDL KRQISNHLKN
LPFAPSAQMR QITGSNVSQA VGLSNEWETD DPEDQIDQRL KKLFASKNLN GTYTQESDAL
LSDLTSISRI RRQGGPKKLP RSSGTCGRAR KRYLEDIAMG EDPCCLLPAM TSKKNERKTI
AKSGSSAPPT SAPEWHAHLT VHEMKSRPSL GEILQQPSPG SEDECDRNRC ITEGSQLHMI
AQGRGKRSFF SRKGLPPSII SPQAIIGGST VKVDRLIRAR MAAATNNSPV VVEWDRQQE
|
|---|
| |