Gene CNC01960 details

Gene Information

• Locus tag: CNC01960
• ID: 3256506
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006685
• Strand: +
• Start bp: 542536
• End bp: 544656
• Gene Length: 2121 bp
• Protein Length: 526 aa
• GC content: 45%
• IMG OID: 638255416
• Product: conserved hypothetical protein
• Protein accession: XP_569448
• Protein GI: 58264584
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0478] RIO-like serine/threonine protein kinase fused to N-terminal HTH domain

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

AAACACACCA GCACCAGGTT TCTAAGAGTG CACTAACGTT TATCTCACGA TAATCCGTGT 
ATTGACTACT ATTACTTTTG ACTTTCAGTG CATTGAGAAT AACTACGATG AAATTAGACG 
CCACCGACCT AAGGTATATT TCTGCGGATG AGTTTCGCGT TCTCACTGCT GTAAGTCATT 
GACCTACCTT TCGACCCTGG AAAGGGAAAG GGCTGATAGT GCCGCAGGTT GAGATGGGCT 
CTAAAAATCA CGAAGTAGTT CCCTCCCAGC TTGCTGCCGA ATTGTCCCAG ATTCGTGGGG 
GAAACGTCAA GAAAGCCTTA GGCGACCTTG CAAAACGTAA CCTGGTAGCT AGAGTACAGA 
ATGTCAAATG TACGTAAGCC GGGCTCTTAT ATTGTTGTTC AGTGCTGACT CCCAAGTTTG 
TCGGATGTGG AATAGATGAT GGATTCAGGT TGACTTATGG TGGTCTGGAT TATCTTGCCT 
TGAGAACCTT CTCTCGCAGA AAGCCACCAA GTGTTCATTC AGTTGGGACC AGGATTGGTG 
TCGGCAAAGA AAGCGATATT TACGTCGTCG CAGATGAGCA TGGTGAAAAG AGAGTATTGA 
AGATGCATAG GTCAGTCAAC AGATAGACGC AGGGTATTTG GATCGAGTCT CATGACGTTT 
GCAACAGGTT GGGAAGAATC AGTTTCAGGG CTATAAAGAG CAAACGAGAC TACCTTGGGA 
AGCGAAAGAG TGCTTCTTGG ATGTATATGA GCAGACTATC AGCTCAGAAA GAGTTCGCTT 
TTATGAAAGT AAGGCGGAAT ATTCGGAAGG AGATTGTATA GTCATATGCT CACCAGAAGG 
ATTATAGGCA CTTTATCAAC ATGGTTTTCC TGTACCAGTC CCCATCGATC AGGCCCGTCA 
TTGCGTTGTC ATGTCTCTGG TTGATGGCTA CCCATTGTAA GTTATTTAAA GCCAATTCAG 
TGAGCTCATA CTTGTTATTA GGCGGTCTGT CGAAGCTGTG GAGGATCCCG CGGATTTATA 
TTCTAAATTG ATGGAGCTTA TTGTCCGTCT AGCTCATGCT GGCTTAATTC ATGGAGACTT 
CAATGAGTTC AACATCATGC TTTTGAGGAA GACTGGAGAG CCCATCGTGA TTGACTTCCC 
TCAAATGGTC AGCACTAGAC ATGAGAATGC GGAGTAGTAA GCATCTTGTC TTGATATGTC 
AAAATGGGTG TCTCTAACGC CATTAATAGT TTTTTCAATC GCGACGTGAA TTGTATTCGT 
CGTTTCTTCA GAAGGCGTTT CAGATATGAA GCTACTTCTT GGCCAACCTG GAAGAATGTT 
TTGGAAATCG AAGCTGGAAA TGCTGAGAAT GCCGTACAAG AGGAAGTAAG CGACGGTCTA 
ACAGATCTTG CGATGGTTCA AAATCGTGTG AGGATTGATT TGGAAGTGGA GGCCAGTGGC 
TTCGGGCGCG CGTTGCAACG CGAGCTTGAG GACGTGAGTG TTCAATTAAA ACGATATTTT 
TTGGCTCTTG TACTATGGCT GTGATAGATG ATAACTTATT TTCAACAGTA TATGATTGAA 
GTGCAAGATA TTCCCGCTAG TGAGAGTGAA GAGGAAGAAG AAGAAGAAGA AGACGAGGAC 
AAAAAGGAGG AGGAGGAGGC AGAGGCATTA TCATCACACG TTCAAGGCAA TGATGAAGAA 
GAGCTTTCTG ACGAAGCTGC TGTGGCGGCT CATCTGGAAG CACTCCGCCT TCATCGCGCC 
TTGGGTAACG ATGTCAGCGA CGAAGATGCC GGCCCTTATT CGGAACACTC CCTTACGGAC 
TTCGCATCTG ATGATGACTC AGATGATTCC GATGATTCTA CAGGTGTTGC TCAGACAGAC 
TTCACAACAT ACACACCTTC AATGCGTAAT CAACCTCGTC ATCATACCAG ATTACCGGTG 
AAGGAATTCG AAAAAAAGGG GGGAGCAAGG AGTGCCATTG CAAAACAAGT AGAGAGAGAG 
AGACATCAGA CGGAGAGGAA AGCCAATGCG GGAAAAACAA GTGTGAAGTT GGGTAAGCAG 
AAGGGGCATA AATGGAAGAG CAGTGATAAG TACGTAGTTG GAAAGGATAG TGGGTGGTGA 
TCACATGTAA CTTTTTCCTA T 

 

Protein sequence

MKLDATDLRY ISADEFRVLT AVEMGSKNHE VVPSQLAAEL SQIRGGNVKK ALGDLAKRNL 
VARVQNVKYD GFRLTYGGLD YLALRTFSRR KPPSVHSVGT RIGVGKESDI YVVADEHGEK 
RVLKMHRLGR ISFRAIKSKR DYLGKRKSAS WMYMSRLSAQ KEFAFMKALY QHGFPVPVPI 
DQARHCVVMS LVDGYPLRSV EAVEDPADLY SKLMELIVRL AHAGLIHGDF NEFNIMLLRK 
TGEPIVIDFP QMVSTRHENA EYFFNRDVNC IRRFFRRRFR YEATSWPTWK NVLEIEAGNA 
ENAVQEEVSD GLTDLAMVQN RVRIDLEVEA SGFGRALQRE LEDYMIEVQD IPASESEEEE 
EEEEDEDKKE EEEAEALSSH VQGNDEEELS DEAAVAAHLE ALRLHRALGN DVSDEDAGPY 
SEHSLTDFAS DDDSDDSDDS TGVAQTDFTT YTPSMRNQPR HHTRLPVKEF EKKGGARSAI 
AKQVERERHQ TERKANAGKT SVKLGKQKGH KWKSSDKYVV GKDSGW