| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNB04170 |
|---|
| Symbol | |
|---|
| ID | 3255691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006684 |
|---|
| Strand | + |
|---|
| Start bp | 1217850 |
|---|
| End bp | 1220651 |
|---|
| Gene Length | 2802 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | 638255062 |
|---|
| Product | vesicle-mediated transport-related protein, putative |
|---|
| Protein accession | XP_569241 |
|---|
| Protein GI | 58264170 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5096] Vesicle coat complex, various subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.567808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AACAACGTTT GCCTCTCCAT ATAACCCACA CAGGGTGCAT ATAGGTATAT TAACGCATCA
GTTGTCAAAG CACCGACAAG GACCGGAAAG AACCGTCCAC AAACTCGTTC TGAAATACCA
GCACGTCACA TACGTAGCCC GCCATGGCCG ACGCCAAGTT CTTCAGTCAG TCACCCTTGT
AGTCTCATGC GCCGCGAAAC GGCAGCTCTA ACATTTCAAT ACAGCCCGGA CGAAGATCCA
AGAGCTGAAA GATGAGCTTC GTGGCTCAAA TGACAAGCGC GACAAGGGGT TTTTGAGAAA
GAAAACGGCC TTGAAGAAGA TTGTTGCGAA TATGACGATG GGCAACGACG GTGAGTCTCT
TGTCCTGCAT ACGAGCTCAA AGAGCCTTCC GAAGGATATG TAGAAGAAAA GCTCACGGTT
AACAATACTA TACTTAGTGT CCCCGTTATT CCCTGATATG ATTCAATGCA TGGCTATTCA
AGTGCTCGAG ATCAAGAAAA GTAAGTCCTG TCCCTCATCA AATGATTGGA TTGCCATTTA
TTCATTGTGT AGTGGTCTAT CTTTACTTGG TGAACTATGG TCGTTTAAGA CCAGAGGAGC
TCAAAGGCGC TATTCCCAGT TTTCTCACTG TGCGCATCAA TCCCTTGCTA TATTACTGTT
GTGCTGATGA TCATTTAGGA TTGTGCTGAC CGTAATCCCC TTATCCGAGG CCTTGCCATT
CGTACCATGT CTTCTATACC TCTGCCCATT ATCGTCCAAG CGCTTGTTGA TCCTTTAAGA
CATGCTTTGC AGGACCAGGA TCCTTATGTT CGTAAAACTG CTGCTATTGC GTAAGCTGGA
TATTCGTTTT CGGGGAAAAG CGTATGTGCT GATAGTCCTG TAGAGTGGCG AAGCTTTATG
CATCAGAAGC TGGAAGACGA GTAATAGAGA GAGAAGGATT CGTAGGCATG CTCAGGTAAA
ACACATTTTC ATATGAGAGA TTTGAGTGAT GGAGAGTTGA CCTTAAAACA GAGACTTGCT
TGCTGATCAC AACCCCACCG TCGTGGCCAA TTGCGTCGCT GCACTTGTTG AGATTTCTGA
GAGGGGTGAC GACATTGTCC TCAAATTGAA TGTCAACGTG GCCGGAAAGC TCATTGCCGC
GCTCGGCGAA TGTTCCGAGT GAGTCTGTTC TCGTTCCCCC TTCCGCGTTT CTGCTGACAT
GCATTGAAAG ATGGGGTCAA ATTTACATCC TCGATTCGCT GCTCTCATTT GTTCCTCAAT
CACATATGGA AGCTGAACAG CTCGCCGAGA GAATATCGGT CAGGCTTCAG CACGCCAACA
GTGCCGTCGT GTTAACTACG ATCAAAGTTA TTTTGTACCT GATGAACTAT ATGGAGGATG
AAGGGCTGAT TATGGCTTTG GAGAGAAAAA TGGGTCCGCC TTTAGGTGAG CTATGATGGG
TAATAAATAA TCCGGATCGC ATTGACAAAG GTTTTAGTAA CTCTTTTATC ATCGGGTTCG
GAAGTGCAAT ACGTCGGTCT CCGAAATATC CTCCTCATCA TCCAACGCCG ACCCGCTATT
CTCCAAAACG ATGTCAAAGT TTTCTTCTGC AAATACAATG ACCCCATTTA CGTCAAGCTT
GCCAAACTCG AAATCATGTA TCGCCTCACC CGAGAAGAGA ACGTCTCAGA AGTGCTTGCC
GAGCTGAAGG AGTACGCCTC CGAGGTGGAT GTCGACTTTG TGCGAAAGGC GGTGAGGTCG
ATTGGCAGAC TGGCAATCAA GATTGCTCCC GCTGCGGACG AATGTATCAA CACGCTCCTG
GGATTGATGC ACACCAAGAT CAGTTATGTC GTACAGGAAG CGATTGTCGT CATCAAGGAT
ATCTTCCGGC GGTACCCCAA CCAATACGAG AGTATCATCG GGACGTTGTG TGAGAACTTG
GATGTGTTGG ATGAGCCCGA GGCAAAGGCA GCAATGATAT GGATCGTGGG TCAATACGCG
GACAGGATCA ACAATAGCGA AGAGTTGTTG GAAGATTTTG CATTTACCTT CAAGGAGGAG
CCCGCGGAAG TGCAGCTGGC CTTGCTTACC GCTGTTGTCA AGCTCTTCAT TCGACGACCT
ACCGTTGCGC AAGAGCTCTT GCCAAAGGTG CTCAAATTGG CCACGGAAGA GGCAGAGAAT
CCTGATTTAC GAGATCGAGT ATGTGACACT GTATTTTTCC TTTGTTTTAC TCTAATTAAT
GACCATGACG TAGGGCTTCA TGTACTGGCG ACTGCTTACT GCCGACCCGG CAGCAGCTAG
GGACATCGTC CTTGCTGAGA AGCCCCCCAT TTCCACCGAG ACCGATCGGA TGGACAAGGG
TATGCTTGAC CAGTTGCTTT TGCATACCGG TACTCTTGGT AGTATCTACC ACAAGAACCC
CCATGTAAGC CGCATCTGGC TTCTCATCCA ACTTGGGCTT ACAATTTTTA TTTTTAGACA
TTCATCCGCA CAGCCAAGCC TAAATACCTT CCTGAATCTC CAGCTCTCAA CGCGTCCTCC
AAACGACACC TCATCACATC CTATGGCCTC CCGTCCCTCT CCCGTTCCAT CGCCCCTTCT
TTATCCACCC GACCTACCTC TTATGTGTCC CAGACATCTC CCACGTCCGC GCTGGCCAAC
GCAGTCCCAG GAGCAGGCGC GATGCAGCCT ACTCAACACA GGGCGGAGAA CGATGACCCA
TATGGTCAGC TTGGTGACCT CGAATTTGGA CATGGAGGTG CTGGTGGCTA CCAGACGGAC
ATTCCGAGAC CAAGAGGTGC GGAAGAGGAT TTGTTATTCT AG
|
|---|
| Protein sequence | MADAKFFTRT KIQELKDELR GSNDKRDKGF LRKKTALKKI VANMTMGNDV SPLFPDMIQC
MAIQVLEIKK MVYLYLVNYG RLRPEELKGA IPSFLTDCAD RNPLIRGLAI RTMSSIPLPI
IVQALVDPLR HALQDQDPYV RKTAAIAVAK LYASEAGRRV IEREGFVGML RDLLADHNPT
VVANCVAALV EISERGDDIV LKLNVNVAGK LIAALGECSE WGQIYILDSL LSFVPQSHME
AEQLAERISV RLQHANSAVV LTTIKVILYL MNYMEDEGLI MALERKMGPP LVTLLSSGSE
VQYVGLRNIL LIIQRRPAIL QNDVKVFFCK YNDPIYVKLA KLEIMYRLTR EENVSEVLAE
LKEYASEVDV DFVRKAVRSI GRLAIKIAPA ADECINTLLG LMHTKISYVV QEAIVVIKDI
FRRYPNQYES IIGTLCENLD VLDEPEAKAA MIWIVGQYAD RINNSEELLE DFAFTFKEEP
AEVQLALLTA VVKLFIRRPT VAQELLPKVL KLATEEAENP DLRDRGFMYW RLLTADPAAA
RDIVLAEKPP ISTETDRMDK GMLDQLLLHT GTLGSIYHKN PHTFIRTAKP KYLPESPALN
ASSKRHLITS YGLPSLSRSI APSLSTRPTS YVSQTSPTSA LANAVPGAGA MQPTQHRAEN
DDPYGQLGDL EFGHGGAGGY QTDIPRPRGA EEDLLF
|
|---|
| |