| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNB02270 |
|---|
| Symbol | |
|---|
| ID | 3255595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006684 |
|---|
| Strand | + |
|---|
| Start bp | 657696 |
|---|
| End bp | 660558 |
|---|
| Gene Length | 2863 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | 638254878 |
|---|
| Product | peroxisome targeting sequence binding protein, putative |
|---|
| Protein accession | XP_569156 |
|---|
| Protein GI | 58263492 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.655025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TCTCCCACAC ATACCGCCAT GTCTGCTTTC CTATCGGGCG CTTCGGTCCA GTGTGGACCT
ACATCTGCTC TCAAAAACGT CTCAGACAGG ATCAACGTTG ACCGTTCTCT ACAACAGGTG
CGCTGATGAG TGTCGATCAC TTTGCAAGCT TATTTATAAT GAGCTAACTT ATCCCGTGGT
AGGATCGACT AGCCTACACC TCGAATGCCT CTGGATCATC ATCAAAGGTG GGTATGGAAG
TATGCATTAC ATCCTATATT GATAGCTTGC ATAGCAGCCA TTCAGAGCTC AACTTGCTCA
GCTGCCAGTC AACCAGTCCC CGAAGCAAGT TCCAGGACCT CCATCAACTT TTGACCTCTC
TTCACTGAGG CAACAGCTTT CTCCTGTTCC ATCAACTTCT CATGCCTCAG ATTGGGCCAG
CGATTTCGTC CCTCTGACAG GACCGACAGC ATCGAAATAC ACCCGTTCTG TAGCTTCCAC
AAAGAGCGGT TGGCAGGAAG AGTTTAGCCA GCATGTTGCA GCCGCGCCTC CACTTGGAAC
CACAAGATCT CAGAAACCCC TATATAATGC TGGTCTTGCA CCATGGGAGG TTCCAGAAAC
TCAATATCAA CTTCAGCGCC CGGCATTGAT GCGACCAAGC TTTCGGTCGC ATGACATTCC
GATTTCAGAA GCAAGCCTGA CATTTCCTCG ACCTGATATC CATGCAGCGG CTCCCGTTAG
TAAATATGAA GAGCAAATTG GTCAACCAAC CGGATCAGAA ACTCTGCCTC TTGATGAATC
TCAACAATTA CTAGCTCGGA CGGCCCGGTC CTTTGTAAGT AATCTGGAGA CCCAGTCAGA
CATTTTATCT GCCAATCCCA AATTTGCACA AAGTAAATTC TTGTCTCTTC TGAGAGGCTT
AGGTGACGAA CAGGTTGTGG TCAAAGAAGG GCAAGAGGTA AAAGGTGAGG AGGTGGGTGA
GGGTGCGACA TTCGTTGAGC GGAACATTGT TGGAAACAAT TGGGCGGAAG GTTTTGCCAA
GCAAAAAGAG AAATCAATAC CGCAAGAAGC CCCCACCTTG GCTGAAGCTG AATACCTCGA
ACGAAGATCG CCTTATCCTC CAGGTCAAAA AGAGTATCCA GCCCTGAATT CTTGGGTTCC
GGCTTTGCCA ACGCACACAT TGGTTCCTCC CCAGACAGCT CCTCAAGCTG CCCGACTAGC
CGCGAATAAT GGTGCTTTGT GGGATCAACA GTATCATGAT CAAGAAGCCC TCATACAATC
TTCGGAATCG CCCGCACCCG AGCCAAGAAA GAATGTCCAC TTTGACGAAC ACCCCGCTTC
TCGAGAAAGG AGTGGTGTAC CCAGCACTCT CGAGGAAGCC ATTTCGTCTC CTGGCAACAT
CCCCGGCGCA GGTTGGGGTT GGAATGAACA AGGGCTAACT CACGACTTTG ATGAAGATGT
TTTTGAAGAG TTCAATGGTC AACTCAGACG GGCCCAAGAA AGTTTGGAAG GCGGAGTGGG
GAAGCAAGAA AGTTGGGATA GGCTGCAAAG TGATTGGGAG GAATTTCAAA GGACAGAACC
TGGCGTTGCA CATTTCAGAG GCATGGGGAC TGGCGACCAG TCAGAAAGAT ACATGTTCCA
AAGTCGAAAC CCTTATTCGA CCGATGAAGA GGAGCTATAT TTCGAAGTGT CTAGAGACTC
ACCTACCTTA AAAGTGAGTT GCATATCCCC TTCTTCTGTT TGATTCAGCC GTCTGACGTA
CATCCCAGGG TATACTTGAG CTTGAATCTG AAGTACAGAA AGATTCTACC TCACATGAAG
CATGGTATGC CCTCGGCCTC AAGCAACAAG AGAATGAGCG CGAAGACCAA GCTATCTTGG
CCCTATCCAA AGTCATTCAA CTGAATCCGC AGTATCGGCC AGCGTATCTT GCCCTCGCTG
TCAGCTATAC AAATGAAGGG GAAAATGAGG CCGCGTGCAC CATGCTGGAG GATTGGATTA
GACTGAAGGA CAGCAAAAAT ACAACCGGCG CTGATGGACA AAAAGGAAAA GACAGAAACA
AACTCATTGA GAGTTTAATA GAAATTGCGA GGCAAACGCC GCACGAGATT GATGCTGATG
TTCAGGTTGC ACTCGGGGTG CTGTTCAATA TGAGTGGGGG CCAGGTAAGT CGTCTTTCTT
GTCAGCCATT GCGCGATTAC TTATGACCAT CTGGGACAGG ATTATTCCAA AGCTGAGGAT
TGCTTTTTGG CGGCCTTGGA GGCCCGGCCT GAAGTAAGGC AGCTTGCTTC CTGTAATACA
TCTCGCAGAT GCTAACTGCC CCTATAGGAT TGGTTGTTGT ACAACCGTCT CGGTGCAACA
CTTGCGAACA GCGGAAGATC CAGCGAAGCT GTACAGTACT ACCATCAAGC TCTGAGGTTG
CATCCCGGTT TTGTCCGAGC TTTGTAAGCA TTTCACCACT ATATCTCGGG TGATGCGAGC
TTTCTAACGC AGCTCTTCTC TTCAGGTTCA ATCTTGGCAT CGCATACATG AATCTCGGTG
AATATCAAAC TGCCGCCCAA TCAATCCTCG ACGCCCTGAG GCTCCAGCAC TCTGAGGCAA
GTGAAGCCTA TGCATACGGC CAGAATGGTG GAGGTGCAAA AGGTGTTACG AGCGAGACGC
TATGGAATAG TCTAAAAGGC GCCTGCTTCT AGTAAGTGCT ATATTCACCT CTCCAAACGT
TTTTGATTCC TGTGTTAACG GATGGGTATC AAGTATGAAT CGACAGGACC TTGTAAAAAT
CGTAGAAAAG AGAGATTTAT CTGGTGAGTA GCCCTATCTG ATGTGCGCCA TCGCTAAATT
TTTGTCAGGT CTGCCATTGA AATTTGTAGA TGAAGAGCTC TAG
|
|---|
| Protein sequence | MSAFLSGASV QCGPTSALKN VSDRINVDRS LQQDRLAYTS NASGSSSKQP FRAQLAQLPV
NQSPKQVPGP PSTFDLSSLR QQLSPVPSTS HASDWASDFV PLTGPTASKY TRSVASTKSG
WQEEFSQHVA AAPPLGTTRS QKPLYNAGLA PWEVPETQYQ LQRPALMRPS FRSHDIPISE
ASLTFPRPDI HAAAPVSKYE EQIGQPTGSE TLPLDESQQL LARTARSFVS NLETQSDILS
ANPKFAQSKF LSLLRGLGDE QVVVKEGQEV KGEEVGEGAT FVERNIVGNN WAEGFAKQKE
KSIPQEAPTL AEAEYLERRS PYPPGQKEYP ALNSWVPALP THTLVPPQTA PQAARLAANN
GALWDQQYHD QEALIQSSES PAPEPRKNVH FDEHPASRER SGVPSTLEEA ISSPGNIPGA
GWGWNEQGLT HDFDEDVFEE FNGQLRRAQE SLEGGVGKQE SWDRLQSDWE EFQRTEPGVA
HFRGMGTGDQ SERYMFQSRN PYSTDEEELY FEVSRDSPTL KGILELESEV QKDSTSHEAW
YALGLKQQEN EREDQAILAL SKVIQLNPQY RPAYLALAVS YTNEGENEAA CTMLEDWIRL
KDSKNTTGAD GQKGKDRNKL IESLIEIARQ TPHEIDADVQ VALGVLFNMS GGQDYSKAED
CFLAALEARP EDWLLYNRLG ATLANSGRSS EAVQYYHQAL RLHPGFVRAL FNLGIAYMNL
GEYQTAAQSI LDALRLQHSE ASEAYAYGQN GGGAKGVTSE TLWNSLKGAC FYMNRQDLVK
IVEKRDLSGL PLKFVDEEL
|
|---|
| |