Gene CNN02460 details

Gene Information

• Locus tag: CNN02460
• ID: 3255399
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006683
• Strand: -
• Start bp: 760649
• End bp: 762648
• Gene Length: 2000 bp
• Protein Length: 621 aa
• GC content: 54%
• IMG OID: 638254653
• Product: retrotransposable element slacs 132 kda protein (orf2), putative
• Protein accession: XP_568729
• Protein GI: 58262638

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCCGCA CTTCTCGTCT CATCCCCTTG AAGAAGGACG ATGGCTCTAT CCGACCTATC 
GCTGTTGGTG AACTTATCTA TCGGCTGTGT GCGAAAGCTC TCATCATCTC GCATTTCCAA 
CCCGACTTCC TCCTCCCGTT CCAGCTCGGG GTCAAGTCAA TCGGTGGTGT AGAGCCGATC 
GTGAGGCTGA CAGAGAGAGT CTTGGAGGGT TCTGCCGGCG CTGAGTTCTC CTTTTTAGCC 
TCGCTCGATG CTTCTAACGC TTTCAACCGT GTAGATAGGG CCGAGATGGC AGCGGCGGTC 
AAGACCCATG CGCCGACGCT TTGGAGGACC TGCAAATGGG CCTATGGCGA CTCATCCGAC 
CTCGTGTGTG GCGACAAAGT CCTTCAATCC TCTCAAGGCG TTCGACAGGG TGACCCTTTC 
GGCCCTCTCT TCTTCTCGAT CACCCTCCGA CCAACCTTGA ATGCCCTCAG CCAATCGTTA 
GGTCCATCAA CGCAAGCGCT CGCTTACCTC GATGACATCT ACCTCTTCTC AAACGACTCA 
CAAGTCCTCA GCAAAACTAC CCAATTCCTC GCCGACAAGC AGCACATCAT CAAGCTCAAT 
GAAAAGAAAT GCAAGTTAAT CAGCTTCGAT GAGATCAGGC AGGAGGGCTT CAAGATGCTA 
GGGACGATGG TAGGTGGTAA GGAGAAGCGG GCGGAGTTTC TGGAAGGCAG GATTCGGAAG 
GAAATGGCAA AGGTGGGCAA GCTCAAGGAT CTTCCGCATC AACACGCGCT CCTTCTATTA 
CGGTTCTGCA TCCAGCAAAA TCTACGACAC CTACAGAGAA GCCTACGCTC CGACGACCTT 
GTAGACCTAT GGGAGAGGCT GGACACGATG CTATGGGAGG AAGTGAAAAG GATGAGGATG 
AGGCAGCGAG AGGATACGGT GGAAGAGGAG GCTCTGGGGA GATCGTTGAC GAAGCTACCA 
GCGCGACTGG GCGGACTAGG TCTACTTTCC TTCAAAGATG TAGCCCCCCT TGCTTACCGC 
TCGGCAGCCG AGGCCTCCGA CACTCTCCTC GATAACCTAG GTCTCCTTTC TTCGCCAGAG 
GAACCTCCAA CTCCGATCCC CCAACGAACT CGATGCGCAG AACTCTGGGA ATCGCAACAG 
GAAGCCATCC TACATAATCT CGGCGACACT GAACGCAAGC GACTCACCGA GAATGCCTCC 
AGACTCGGCC GAAGYTGGTT ATCAGTCATC CCTTACCTTC AGCCCCTGCG CCTTTCCAAC 
GTCGAGATTG CCTCGGGTCT CCACGACCGC ACCCTGGTCG GCTCCTCGAT ACCTGTCTGT 
CGCTTCTGTG GGTCGGACTC ACCTTTGGGT CACGACGAGC TTTGCCGCGC CCGCAACCCC 
TGGACCCAGC GCCGGCACAA TGCCATCAAC CGCGTCATCT ATCAACACCT CAAACAAATC 
CAAGGTGCCA CGGTTGAGAT TGAGCCCCAC ACGCTGTCGG GACAAAGGAG AAACGACCTT 
CGGGTCAGAG GTTCCAGCGC GCTGGCCTTC ACTGACTACG ACCTGAAGGT TTACTCCCTC 
GGGGACCGAG ACGCGAGGAG CACAGCCACC CCCAGCACCC CCAACAGCAA ACTGGCCGAM 
TTCTGCTTGG ACCGGTGCGT GAACTGGCTC GACAAGGTGG GTCAGGTCGT CTCYAAGAAC 
GCTCCGAAAG TCACYGGTGG GGTCTTTAAA CCGATCATCC TTTCCACTGG TGGCYTGATG 
AGCAGGAGCA CAGCAGACGA ATGGAAGGAG TGGAGGGAGG CGATGCCGGT GGGGGGGTTC 
GAGAAAATGG AGAAAMGGAT TGGTGTCGAG TTAGTAAAGG CRAGGGCKAG GACGCTGGTC 
TTGTGAGGAA GAGGAGGTTG GATTATTTTT TCTTTTCTTT AAAAATGTTG TTTATTTAAG 
TAGTTTCTTT AATTCGGGCA ACCCACACGA CAACCCAATA AATTAAACAA CGAAAAAATG 
CAACCTCTAT AACCCCCTAG 

 

Protein sequence

MLRTSRLIPL KKDDGSIRPI AVGELIYRLC AKALIISHFQ PDFLLPFQLG VKSIGGVEPI 
VRLTERVLEG SAGAEFSFLA SLDASNAFNR VDRAEMAAAV KTHAPTLWRT CKWAYGDSSD 
LVCGDKVLQS SQGVRQGDPF GPLFFSITLR PTLNALSQSL GPSTQALAYL DDIYLFSNDS 
QVLSKTTQFL ADKQHIIKLN EKKCKLISFD EIRQEGFKML GTMVGGKEKR AEFLEGRIRK 
EMAKVGKLKD LPHQHALLLL RFCIQQNLRH LQRSLRSDDL VDLWERLDTM LWEEVKRMRM 
RQREDTVEEE ALGRSLTKLP ARLGGLGLLS FKDVAPLAYR SAAEASDTLL DNLGLLSSPE 
EPPTPIPQRT RCAELWESQQ EAILHNLGDT ERKRLTENAS RLGRSWLSVI PYLQPLRLSN 
VEIASGLHDR TLVGSSIPVC RFCGSDSPLG HDELCRARNP WTQRRHNAIN RVIYQHLKQI 
QGATVEIEPH TLSGQRRNDL RVRGSSALAF TDYDLKVYSL GDRDARSTAT PSTPNSKLAX 
FCLDRCVNWL DKVGQVVSKN APKVTGGVFK PIILSTGGLM SRSTADEWKE WREAMPVGGF 
EKMEKRIGVE LVKARARTLV L