Gene CNN00980 details

Gene Information

• Locus tag: CNN00980
• ID: 3255328
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006683
• Strand: +
• Start bp: 306213
• End bp: 308147
• Gene Length: 1935 bp
• Protein Length: 437 aa
• GC content: 50%
• IMG OID: 638254514
• Product: hypothetical protein
• Protein accession: XP_568736
• Protein GI: 58262652
• COG category: [E] Amino acid transport and metabolism; [H] Coenzyme transport and metabolism
• COG ID: [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
• TIGRFAM ID: [TIGR01123] branched-chain amino acid aminotransferase, group II

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCACTCTTTC TTCTTCATCT AAAATCACAA AAATGTCCAG ACTCGCCCCT AGACTCGCCA 
CAGCTGCCTG CGCTGTCCGA CAGCCCGCTG CCACTCGTGC TATTGCTGCC GCGTTTGCCG 
CTCCGTTGAC CAAACAGATT AGGGGGTACC GATCCCAACC TATGAGGGAT GTCATGACCG 
GCGAGATCAT CCAGTTGCCC GACATCGACG TGAGCAACAT CGCATGTATG GCCTCCGACT 
ATTCGAACTG ACAACCGGAT GAATGTAGCC CTCAACTGTA AAGGTCGACT TGACGACCCA 
CGCCAAATCA CGTCTCCCCA ACTCTAAACT CGTTTTCGGC CACACCTTCA CCGACCACAT 
GCTCACCATT CCTTGGTCTA GCAGGAGTGG ATGGGGAACC CCTCATATCA AGCCTTGTCA 
GTATTATGCT CTGTTGCAAA CCGTCAGGTA TCAACTGACG TGGATCCATT TTGGCTGTTT 
TTTTTTTTCG CGTGCGTTAG ACGGTCCACT GGAGCTCGAC CCTTCATCGA CCGTTTTCCA 
TTACGCATTC ACATTGTTCG AGGGTATGAA GGCCTACAGG CAGGAGGACG GTACTATTAG 
ATTGTTCAGG CCCGACATGA ACATGGCGAG GATGAACAGG GTACGTTATC GCTTTTGCTA 
CGTGAGTCTG CGCAGTTACT GACGGGGTAT TGCATGCAGA GTGCCGCTCG TATTGCTCTC 
CCCCATTTCG ATAGCAAGGC TCTCATCGAA CTTATCAAGA AGCTCGTTAT CCTCGACTCT 
GAATGGATCC CCAAGGAGAA GGGTTACTCA TTGTACATCC GACCTACATT GATCGGTACC 
CAAAACGCTC TCGGTGTCGG ACCTTCCAGT GATGCTTTAT TGTTTGTCAT CTGCTCTCCC 
GTAAGTTGAT TTTACAATTG CGCATGGAGG GAATCATGCT GAAGTAGATG CAGGTGGGCC 
CTTACTACGC CTCTGGATTC AAGCCCGTCC AACTTTTGGC TACGACCAAG TTTGTCCGTG 
CCGCTCCCGG TGGTACAGGT GGTTACAAGC TCGGTGCCAA GTAAGCGTTA TCCAAACGTT 
TCGCGATTCT CAAATTTGAC CCAAAAAAAA ATCACAGCTA CGCCCCCGGT GTCGTCCCTC 
AAGCTGAGGC AGCGAAAGAA GGCTACAGTC AAAACCTTTG GTTGCTTGGT CCCGAGCACG 
CTTTGACGGA GGTCGGTACT ATGAACTTGT TCGTTGCTCT CAAGAAAGCC GATGGCTGTA 
AGTCACTCAT CATCATTTTC ATGCTATGGA ACCGAAACCA AAATACTGAA AATGAACATT 
TTTAGCCGTT GAGCTCGTTA CCCCTCCTTT GGACGACGTC GTCCTCCCCG GTGTCACGCG 
AGACTCGTAA GCACATTTTC TCATCATTCG CCTAGCAACC CCAGGAACCC CGAAACCCTA 
ACCAAAAGTG TGATCCTCTT AGCGCTCTCC AACTCGCACG AGAACACGCT TCCGGCAAGA 
CGCCTATCCC CGGCCTTCCC GAAAAACTTG TTGTCTCTGA GCGAAAGCTC GTGATGGCGG 
ACCTCGTCGA GGCCGAGAAG AATGGTACAT TGGTCGAGGT CTTTGGTACC GGTACGGCCG 
CCATCGTCTC TGCCGTTGAC AAGATTGGTT ATGAGGGGCG TGATATTATC ATCCCCACCG 
GCCCTGAGGG TTTGGGTAAC ATCGCCAAGG GTATCTTGGA CAGGATCACG GCTATCCAGA 
CCGGTGAGAT TGAGCATCCC TGGAGTGTGA TTGCGAACGA CGTGTCAAGC TCCAATTTCT 
AGACGTTTTC TTTTCGTTTT TTATATATAG GAAAACTGGA GTAAGGTGGG GTATTATTTG 
ACTTTTTGGG ACATATACTT GTGCTAGGCT ACGAGAGTTG GTTGTAGAGA AATATGCATT 
GGTATATCCA TTTAG 

 

Protein sequence

MSRLAPRLAT AACAVRQPAA TRAIAAAFAA PLTKQIRGYR SQPMRDVMTG EIIQLPDIDP 
STVKVDLTTH AKSRLPNSKL VFGHTFTDHM LTIPWSSRSG WGTPHIKPYG PLELDPSSTV 
FHYAFTLFEG MKAYRQEDGT IRLFRPDMNM ARMNRSAARI ALPHFDSKAL IELIKKLVIL 
DSEWIPKEKG YSLYIRPTLI GTQNALGVGP SSDALLFVIC SPVGPYYASG FKPVQLLATT 
KFVRAAPGGT GGYKLGANYA PGVVPQAEAA KEGYSQNLWL LGPEHALTEV GTMNLFVALK 
KADGSVELVT PPLDDVVLPG VTRDSALQLA REHASGKTPI PGLPEKLVVS ERKLVMADLV 
EAEKNGTLVE VFGTGTAAIV SAVDKIGYEG RDIIIPTGPE GLGNIAKGIL DRITAIQTGE 
IEHPWSVIAN DVSSSNF