Gene CNM02040 details

Gene Information

• Locus tag: CNM02040
• ID: 3255278
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006682
• Strand: -
• Start bp: 631613
• End bp: 633615
• Gene Length: 2003 bp
• Protein Length: 499 aa
• GC content: 50%
• IMG OID: 638254358
• Product: conserved hypothetical protein
• Protein accession: XP_568400
• Protein GI: 58261980
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACAATTC CACCTGTCTT GTATCTAAGC TGGCCTTGTC AAATTTATTC TCTCCGCCTT 
CTTCTTTATT ATTGTCCGAT ACTGATCTTT TACCAACTGT TTTACTATAA CGCTCTGGTA 
GCGAATACCC TCTCCTAAGA CACCTTCTTT TGTGCAACAA CGCTCTTTTG CTGCCGGTCA 
GCTCTTTTGC CACGAGAGCG GCAAGAATAA TAACATCAAC CTCCGCCGGG TGCGACAACT 
GATCAACATG AAACTTCTCT CACTCCTCCT CCTCCTCCTT CCTGTTCTAC TTGCTGCCCC 
TGCTCCTGGG CCCCATGCGT ACAACCCATT CTTCCCTACC AGCAAACACA GTGGCTTCAT 
CTTGCCTGCC AAGCGTGGCC TCAGCTCTAG AACGGAAGCT CAACGGATCA ACCCAGAATT 
CTTCAAGAAA CAAGGTCGGT CCAAGGTGGA TTCTGTGAAG AGAGACGTGG TGACCAAGGT 
GGTTAAGAGG GCGACTGGTA CTTGCATTGC GTCGACCACA ACTGCCTTTG TGACCTCAGT 
CGTCACTGTC ATTCCTGACT CGTTGCCAAC TAGTGCTTCG GGTTCCGACT CTACGGTCAG 
TATCAGTGCC ACCGAGTCTC TCAGTACTGC CCAGTCCTCC GACTTGTCGT ATGTGGCTGT 
TTCGGCTACA GCGTCAGCTA CCGACTCTTC TTCCCAAATT GCTAGCACTA GCGTTTCATC 
CTCTTTCACC AGCCCTTCAA GCAGTCCATG GTCTAGTTCT GCTGCGAATT CTGCCTCGGA 
TTCTCTTGTA TCGTCGGTCT ACGCCCTTCC AAGTACATCT GTAACATCCG AAAGTGCTTC 
GGTCACTCAA TCCCATCCAG CCGACGCTTC TTCTGCCGGT TCTAGGGCAG AGATGTCAAT 
GTCTGCCAGT GCCTCCGCCA CCTTAACTTC CTCCTTCGCC GCATCCTCTT TCTCATCCAG 
TGCCGATAAA GGCAAGCAAA CCAAGACGAA GACTTTGGGC GCTACATCGA CCGCCGCCGT 
AAACACCAGA CAAGCTTCCC AGTCGACCGC GAGCTCCAGC ACCACCGCTT TATCTGCCGA 
GGTCACTCCT ATGTCAAGCG TAAGGTCGTC TTCTCGAGCT ACCTCCAGCT CGACCTCGAC 
TGCTATCCAC AGCACTGTTC ACTCCTCCAC AGTTTCATCT ACCAGCTCTC ATTCTTCCAC 
CGCTACGTTG GTCTCTTCTT CGTCCTTCAC CCGCGCAACT GCCTCATCCA CTTCTACATC 
CACCTCCTTC ACTCCCACAT TTACTTCCCT CTCGACGTTT TCCGCACCTT CCTCTACCAC 
CGCCACATCC GCTGCTGCAG CCACCTCTTC TGCTGTCTCC GCCGACCCTG ACGGAGATGG 
TCCTTTCTAC GGCCAAGGTA CCTGGTACTA TCAGTATAAC ACTGCAGGAG CTTGCGGTAC 
CGTCAACCCT GATTCGGCTT TCATTGTCGC TGTCTCTGCT GAACTGTTTG ATAACTGGCC 
TGGGTACAAC GGTCTGAACC CCAATAACAA CCCTATCTGT GGTCATCAAG TGAACTTAAC 
ATGTAAGTTT CTCTTTTCTG AAAATATTTG ATACACAAAT GCTGAAGGGC GGCAAACAGG 
GCAGGGAACT TCAATCACTG CTACTGTTGC AGACCGCTGC CCTGGCTGTG AACTCCGACA 
CCTCGACCTC TCTCGTGGCG CCTTTGGTGC TCTCTCAAAC GACGACTACG ATATCGGTGT 
CTTTTCCACT ACTATCGATG GTCAGAGTTA TAATCAAGAT CTTGAGTGGT CTTGGCTCAA 
TTAGACATGT TTGAAGGGTT GAGAGATGAG GAAGAGAAGG AAAGGCGTTG TCAAGGTCGG 
GGTTTGCCAG GTCAATAAAT AAGGCTTCTT CATACTAAGC GCTGTGCGTG AGAGTATGTT 
TATTGAGATT TATAGTATTC TCATAGATAA TTCCATAATA AAGCACGAAA TGCTGAGTAT 
ATGTATATAG TGCAACTTAC TCC 

 

Protein sequence

MKLLSLLLLL LPVLLAAPAP GPHAYNPFFP TSKHSGFILP AKRGLSSRTE AQRINPEFFK 
KQGRSKVDSV KRDVVTKVVK RATGTCIAST TTAFVTSVVT VIPDSLPTSA SGSDSTVSIS 
ATESLSTAQS SDLSYVAVSA TASATDSSSQ IASTSVSSSF TSPSSSPWSS SAANSASDSL 
VSSVYALPST SVTSESASVT QSHPADASSA GSRAEMSMSA SASATLTSSF AASSFSSSAD 
KGKQTKTKTL GATSTAAVNT RQASQSTASS STTALSAEVT PMSSVRSSSR ATSSSTSTAI 
HSTVHSSTVS STSSHSSTAT LVSSSSFTRA TASSTSTSTS FTPTFTSLST FSAPSSTTAT 
SAAAATSSAV SADPDGDGPF YGQGTWYYQY NTAGACGTVN PDSAFIVAVS AELFDNWPGY 
NGLNPNNNPI CGHQVNLTWQ GTSITATVAD RCPGCELRHL DLSRGAFGAL SNDDYDIGVF 
STTIDGQSYN QDLEWSWLN