Gene CNM01550 details

Gene Information

• Locus tag: CNM01550
• ID: 3255091
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006682
• Strand: +
• Start bp: 449942
• End bp: 451897
• Gene Length: 1956 bp
• Protein Length: 464 aa
• GC content: 46%
• IMG OID: 638254308
• Product: endopeptidase, putative
• Protein accession: XP_568336
• Protein GI: 58261852
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1222] ATP-dependent 26S proteasome regulatory subunit
• TIGRFAM ID: [TIGR01242] 26S proteasome subunit P45 family

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.865518
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGATAAACTT CTCTATATCC TGTACACCAT GTCTGCCCCA GCCCAAGACC CTCCTCCTCC 
TAACCCTCCG GCCGGAGACA GCAGCAAGCC ACAAGAATCA TCAGACGTCC CTCAGCAAAC 
AACCCAGGAG ATTGAAAGCG CAGAGCAGCA ACAGCAGCAG GAAGTCGAGC AGCCCAAGGA 
GGATACGTTT GAAGATGTCC CGGAACATGT CGTGAAGGTT GGTTATTTTG ATTGTTGCTT 
GCTTCCAATA TGGATTAGTT TGCTCATTTG AATCTCCGCG ACAGTCTGAT GCGCAAGAGA 
TCAAGATGCA GACACGTATG ATCGATAACG AAATCAAGAT GATGCGACAG GAAAACCTCC 
GGCTGTCACA CGAGAGGGAG CAGATGGTTG AGAAGATTGC GGATAATACG ACAAAGATCA 
AGCAGAACAA GGTTCTGCCT TACCTTGTCT CCAAGGTCGT CGAGGTATGT CCTTCATGTT 
ATATCATTTC GGAGCGAGAA GAAGTGACTT GCTGATACAA GAGTGTCTGA ACAGATTCTT 
GATGTGGACT CTGAAGAGCA AGAAGGTGCT ACTCATAATG AACAAAACGC TAAAAAGTCA 
AAATGTGCTG TTATCAAAAC ATCAACGCGT CAGACAGTAT TTTTGCCCAT TATCGGGTTG 
GTTCCGCACA ATCAGCTTGC GCCTGGAGAC TTGATTGGTG TCAACAAGGA TTCTTATCTG 
GTTCTGGACA AACTTCCAGA TGGTGGGTCT ATCTCCTGTC ATTTGGGTGC GAAGCTGATT 
GGGAGCAGAG TACGACGCGA GGGTAAAGGC GATGGAAGTG GATGAAAGAC CGACTGAGAC 
ATACACGGAT ATTGGTGGTT TAGACAAACA GATTGAAGAA TTAGTAGAGG CCATGTTAGT 
TCACCCATAT CATCGTGGTG GAAAAGCTAA CAGCTAGGCA GCGTCTTGCC CATGCAACAA 
GCAGACAAGT TCAAGACTCT TGGTATCACC CCTCCAAAAG GATGCCTTAT GTACGGTCCG 
CCTGGTACCG GTAAAACCCT GCTCGCCCGA GCCTGTGCCG CTCAGACCAA CGCTTGCTAC 
CTCAAACTCG CCGGTCCCGC TCTAGTCCAG ATGTACCTCG GTGACGGTGC CAAACTCGTC 
CGCGACGCTT TCGAACTTGC CAAGCAAAAA GCGCCTGCTA TCATTTTTAT CGACGAGTTG 
GATGCGATTG GAACAAAGAG GTTTGACAGC GATAAAAGTG GTGACAGGGA AGTGCAGAGG 
ACAATGTTGG AGTTGTTGAA CCAACTGGAT GGTTTTTCGA GTGATAGTCG AATCAAGGTG 
TGTACTTTTT TAGCTCCTTG TGGAGTCGAA AGGAAAAAAA GGAAAGAAAT TGACAATGAG 
TCAAGGTCAT TGCCGCTACA AACCGAATTG ATATCCTTGA CCCTGCCCTT CTCCGATCAG 
GCCGTTTAGA TAGGAAGATT GAATTCCCTC TGCCAAATGA GTCTGCTCGA GAGCATATTT 
TGCAAATTCA CTCTCGAAAG CTTAATCACC ACGGCGTCAA GTGAGTATCT GTTACTTTTA 
GATCAGCGTG GAATGAATCG CTGACATTTT TCAAGCTTTG AGGAATTGGC TAGATCAACA 
GAGGATATGA ACGGTGCGCA ATTGAAGGCT GTTTGTGTTG AAGCGGGCAT GGTACGCCTT 
TATCCATAAT CTGCCTTTAA TCAAAACTTG AAACTGACGA TAATAATATA GTTGGCTCTT 
CGACAAAACG CTACACAACT GACACACGAG CATTTCCATG GGGGTATTTT GGAAGTTCAA 
GCACGCAAAG CCAAGGAACA CCACGTAAGT GCATTTGCCT GCCATGGATC CGAGGGATGG 
GATTGGCTGA CATGGAACAG TACTTTGCAT AATGACGAGA ATTTGGTTGA TAGTAGATAT 
GATGTTTGCA TATGTAGATG TATTCGATTG ATTATG 

 

Protein sequence

MSAPAQDPPP PNPPAGDSSK PQESSDVPQQ TTQEIESAEQ QQQQEVEQPK EDTFEDVPEH 
VVKSDAQEIK MQTRMIDNEI KMMRQENLRL SHEREQMVEK IADNTTKIKQ NKVLPYLVSK 
VVEILDVDSE EQEGATHNEQ NAKKSKCAVI KTSTRQTVFL PIIGLVPHNQ LAPGDLIGVN 
KDSYLVLDKL PDEYDARVKA MEVDERPTET YTDIGGLDKQ IEELVEAIVL PMQQADKFKT 
LGITPPKGCL MYGPPGTGKT LLARACAAQT NACYLKLAGP ALVQMYLGDG AKLVRDAFEL 
AKQKAPAIIF IDELDAIGTK RFDSDKSGDR EVQRTMLELL NQLDGFSSDS RIKVIAATNR 
IDILDPALLR SGRLDRKIEF PLPNESAREH ILQIHSRKLN HHGVNFEELA RSTEDMNGAQ 
LKAVCVEAGM LALRQNATQL THEHFHGGIL EVQARKAKEH HYFA