Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNM00300 |
Symbol | |
ID | 3255277 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006682 |
Strand | + |
Start bp | 73459 |
End bp | 79246 |
Gene Length | 5788 bp |
Protein Length | 1701 aa |
Translation table | |
GC content | 51% |
IMG OID | 638254189 |
Product | hypothetical protein |
Protein accession | XP_568368 |
Protein GI | 58261916 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.212573 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGAGCA GGATGTCCCA GGAAGGGGGC CAGCCTGGCG CGATGGGGTC CACGTCGGTC CCCCGCTCCG TATCCGTCTC GGATGCCATC ACATTGTTCG AACAAAAATC TCGATCCTCA TCGACATCAA TGTCAAGATC ATCATCCCGT TCAGTCATCT ACATGAACAC AACATCAAGC CCTTCTGGGT CTGGTAATGC GGTCAAGTCT GAATCACGGA TAAAACACCC CCCGAGATCC CCGTCCAACA CAGCGGTATC AATATCGGGT GATGCGCAGC CGCAGTTGGC GGAAGTCAGT GTGTCGAGCA AATCCCGTAG CATGGATGTT GCCAGTGATA CTGGAGAGGC GAATGAGATC GGTGTAAGGG GTGTGCCGAC TATCCGACCA CAACGTTCGG CGTCTCGCCC AATGGTCCCC AAGAGGGTAG CATCAAATAC ATCTGCCACG ACATCCGCAT CACGGACTCC TCCAGCATCT CCCAGAAATC ATCCAGGAAG ATCAATATCA AACGTATCGT CCAGCTCTTC TCGAGCATCG CTGGCAAATG GTAGTGCATC AAACAAGGCC ATAGGAATAG GTATAGGTGT CCCGAGCACA GTTAGGAGCA GAGATGCTCG GAGAGCAAGC GATACTGCCA GCATTCGACC TCGTAGCCCG CGCACCTCCT ACATTGCACC CAATCGGCAG CCATTCCCAC ATAGTATAAG CGCTCCACGC AGCCTCAGCT CTCAATCGTA TGGCGTCGAA CATGACGATT TCTCCCCCCG CTCCGAGCGA TCACAGTCTC CCTTCCATCT CCAACCTGCC ATATCTGTAT CGCAAGCTAC CCCTGAGAAG CTTCTCCCAC CTCTGTACAT GCAATCCTCA AGGTCAGACT TGCCGAGGCG TACTAATGGG ATACCCATCC CGTTATCTCG ACATACCAGT ATCTCATCGA CTCCCAGCGC GTATTACACG CCACCATCAT CAAAATCCCC CATGTCATCA GAATTAGAAC AAAAGGGGGA GGATGTGACT AAAAGCTCGA TTCTGGATGG ATACTTTCGC AACTCATTCG GAAGAGACTC TTCATTCGGA CCTGAACCCA TAACATTAGC AACAACACTT GAGCAGACGA GATCCGATCT GTCGATCGCT CCAGATATGG ATCGCAGATC TAGTGCCATG GAATTGTATA GACGTAAAGA TTCTTCTGGA TCAATAAGTG AGTCCTTATC TGATTATCTT CGAACGGTCC TTGAAAAGCA ACTGGCTGAT AATAGCATCC TTTGTAGCCT CCCAGAGGTC TTCCAAACCA CTTCCGTCTT TAGATGTACC TTTGGGTGAT CCTATTACCA TTGCTTCACC TCAGCAAATA CCGGCAGCCC CTGCTTTGCA CCACGCCAGC CTGACGTCGT CATTGAATGT TGGCACAATG GCGAGTAACC CTGAATTGAC GCAACCTCTT CGCAGTACAA CACCTACCGA ATCGCAATCG CAACCACCTC CCCGCAAATC ACCACGTAAA CCGCCTCCTC CCAATCTCGG TATAACACCT CCAAATCCAG CTTCTCTACT TTCCACCCCC AATCCGTCAG GATCAGCTAC ACCTGCAGCA ACACCACCTG TCCCACTCAA GAGTCCATTG AGGAGTATCA GCGGAGGATC CTCGGTGACT TCTTACAATT CATATTCGTC TGTTGAGATT CCGGGAGAAA TTTCTGTCGA AACTGGAATA GGGCTAGGCT TCGAAGGGAA ACTGGGACTT GAAGTGGAAG GCAAGGTGGA GAAAGTGAGG AGAGTGAAGA AGCTTGCTTC GATGGATTCC ATCATTGCCA ATGCTGGTAC ACCGCTCACA AGCCAAACTC GAATGACACG CCTCGTGTCC GCCACAGCAG ATGATCATAC GTCCCAATCG CCCTCTCAAA AAGACGTGAA TGCACTGAAG AAGCCGGACG ACGCACGTTT CACCATGCTC ACAGCACCTT CCATTTACTC GCAAGACTCG GCTCCATCTT CAGCTACGAG CTCGGCTGGG TTGACTGATA GTCCGACAGA ATCTACCTCC ACGGCAGGGA AGGCTGGAAG TGGAAACGCG TCGGAGAGTA CTAAAGGAAG TGGAAGGAGG AGGCCGATGT CGGGAGTGTT CACACAAATG GCGGTTGGAT GGGGAAAGAT GAAAGAGGAG AGGGAAAAGA GAAAAAGTGT TGATCTGGGC AACAGCGGGC ATCGGGTATG TGCAACGTTT TTGTTTGGAC GAAGTCTGAC GTGATTTACA GAGATCGTCT TCTCTTCCTC GCCCAAAGTT AGTCTTGCCA GATGAGGGAT TCCTTACTTC TGGTATTACT ACCGAGTCTC CGGATACTGC CCACACCAAC GCTTCGAGCA CTACAGTGGC CTCTAACTTT TCAACCCGTC CAACATTAGG TCACACTCCT CTGTCGTCTG TGCCTCCGTC TTCCCTTGGT GCGAGACCAA CAGACCGATC CCATGGCAAA TCACCGTCAC TCCCTATCCT TCGTCGTTAT CCTACTTCGC CTACCTCCAC TGATCCGACC TCCAAAGGCA ACTCCATCCC TCCACCTAGT CCTCGACGAG CTGAAACCTC AACCGCCCTC TCTTCTTTCC TTTCTCCATC TTCTACGACG TCCCCCGCTA CATCAGGTGT CAGCAAACGA TCACACCTTT TGAGAGAGAT TGCCACATCT GAACGAGCAT ACGCTAGAGA TTTGAAGCTG GTGAGAGACG CGTATATGTG CTCACATTCC CAACAGTTTC GAGAAGGATC CTTATCATCC ATGTCGAGCT CTGCCTCCGT ATCAACTTCC GACTCTGACA AGTCAAAGCG GCGATCAATG TACATGTCCC ACACTCAAAG TCTCAGTGTC AGCCAGACGT CAAGCACGCA ACGTGAAGCG TTACCTAAAA GCCCCAGTGA AGGAATGAAC CTTACTCTTC AAGCGGCGCC GCCTGTTGGG GCAATGTCCC CTCCAGTAGG TAAACCTCTT TCACCGGCCG ATGTCAAAGC TGTATTTTTG AACCTTGATC AGTTGGCGGC TGTGGCTGAG GAGCTGGCAA CAAAATTCGA GGAAGCTGTG GGAGAGGATG AGGAAGAGGG AAGGGAGTGT GAGGGCGGGA GTGATCGTAT GGGAGAAGTT TTCGTTTCTA TGGTGCGTAG TGGTATGGAA GAGGTTGGAT ACTGTTGACA TTTTCGATCA GGTACCGAAA CTCCAACCCC TCTATAGCTA CTTTTGCGCT CGCCAATCGT CAGCCTCGCG CCATTTAATG ACCCTCCAAT CCAATCCTTC TCATTTTACA TACCTCTCAC AACGCTGGTC CTCAATATCC ACTCAAACTC GCGCTTGGAA TCTCGACTCT ATGCTCATCA AGCCTGTTCA GCGAATTACC AAGTATCCGC TACTGTTTGA AGACCTGTTG AAAATGACAA CCCCAGTGCA TGCGGATTAT TTCAAGATTC GGGAGGCCAA GGAGATGGCA AGAGGTATGG CGGTGGAGAT TGATGAAGGG AAGAGGAGGA AGGAAGCTGT CGAGAATGCG ATAGGGAAGA AGAATATGAT GGCTCAGCCG ACAGTGAAGG ATACAAAAAA TTTAGTCAGC AAGACTCAGG GATCAAAGCT CCTTGGCTTG AAGAGGTTCC GTAAAGATAA ACCGAGAGCC CCTTCGTCAT CTACACCCGA CCTTGTATCC CCTCAGCAAA TAGCTCAGTC TTCGCTCAAC CAACTCAGCG AGCTGTCTGC CAGGCTTACT GCTCTTGATG AAGGAGTTAG GAAGATTGGA CAGGAGATTA TGCTGTGGAC GGCGGCCGCA AAGGAGACAT TTGTAGCCCA GGATGATCTT GTCAAAACGT GGCTGCATGT CGTGCAACTT GAACCTACCG ACCCGACTGA CCAGAGGATG TTGGAGATGC GAAGGGTTAT CGACGGTATT GTGTCAGAAG CGTGGGGAGG GTTGGTACGT TAATCCCTGC GCGAAAGCTC CCTGTAAATG CTGACGGTAA ATTAGAATAT GGAGGTTGAA GACCTGATAA TACCGATCCT ATCCAATCTT CTCAACTCCA CCAGCAACCC ACGCAGAGTC CTTTCCAAAC GTTCCGCTAA GCACCCTGAT TATACTCGCT ATCACGCTTT CAGAGTATCG AAGCGTACAC CAGACAGAGA TATTGTGCAG GGCGCTCTGG AGTTTGTAGC TTTGCATGAG CAGTTGATCG AAGAGTTACC GACATTCTTA GAAGGATGTC TGAGAATTTT GGATATTGCT GTTGTCGGGT TCGCAAGAGC CCAGGCAAAA TACTTTCGGA CGACGCGAGA CCGGTTGAGG GCGTTTGCAG AGGGATGGAT TCAATCGCCT CTTGGTGCCA GTTTGGCCAC GGGCGGGTCA AGTGGGGAAA GCAATGTGGT AGCAGGGGCG GATATAGTAA AAGCGTGGCA AGAAAGTTGG GAACCTTATG CGGAAGCCAT GGATAAGTTT GAGTGCACCA AGGCTTGTAA TTCCTCTTCT TGTCTCAATT CTTTCCAAAG TCGCTGATAT CCGTAGCATT CAAACCAGCC AAGTTGAAGC ACAAAGATTC CGCTTATCGA GGTGATCTTC ACCCTCCTGG GCTTCGACAC TCTGCTTCTA CCACTAGCGC ATTTTCACCA CCATCTTCTC GGCCCGAAAG CCCTGCTTTC AGCGTACCCA CTCGTGTACG GTCGTCCTCG CTCCGCGATT CATTCACCAC CGCCCCAACT ATCATCACAC CTCATACATC ATCATCTACG TTTGCAAGTT ACGGTAGTCA AGCATTGAGT AAAGACAGCC AGAGTGCAGG CCGTTTCAAT CTCCTTCGCC GATCCAGCTC AAAGAACAAC ACCAACGCGC CTTCCAGACC CCCATCCCGC CCCACTCATT CCCGTCGTGG CTCAGGCCTT CGTCCTGCCT CTCTCGCATC GGACAGCAGT AGGTTGTCTT GGGGCCTACC TCAGATCCCA GCCGAGGGGG CGGGCAAAAT CTTTGACTCA CTTGGGTTTT CGCCCACTGA CTCCTTTTCA CTCATGTCAG CGACATCACC GACTTCAGCA TCTAGCAGAA TTGAAGAAAT GGCCGAGAGG TCGCCTCATT TGGGGGCGAG TGCACCAGAG TTTAGCAGTT TAAGGATGTC GCCTTATTCA CCCAACGGTG CGTTTGTGGG CCAAGTGCCC ATGCCTAAGC ACCCTTTTGC TGTAAGCCCG GCCAGTGAAA CTTGTTCTAG GTCTGGATCA AGGGCCGATG CAAGAAGAAT GAAAGGGGGA GAGATTGATG TGGCAGAAGG CTGGAGAAAT GAAAAGGTTA TCTATCAATG TGCTTGTGTT GCCGACTTGT AAGTGATTTA GTCTTCCCTG CCATATAAGA AGCTAAATAC GTCGACAGCG AGCCGATTGA GCTGGGAAAC AAAAAGTACA GAGGTCTTTG GTTCTTACCC ATGATGGTGG GTGACCTTAT CGAGTGAGTT TTTGCCCTGC TGCACGCCTT GCGTATTGAG AGCCGACTGA CGGGCGTTGA TCTCAGTGTA TTCCATGAAG TGGGTCGTAT CGAAGAACTG CCTTCTTTCC CGTATCCCGA AGTCGGCGTT GAGAATGATG GTATCCTCGT TGGACGTGCA GAGAATGGCG AGATTGGCTT GGTGATCTGC AGTTTTTTGG AGCCGTTAAG GTGAACGGAT CCTGACTTTT ATTCTTCTTG AGAAGATGAA AAACATTAAA ATCTTGTCTT TTTGATTTGT GAAATAGCAT AGTTGTATTG TATACATTTG TAGCATTTGG GTTTTTGT
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Protein sequence | MESRMSQEGG QPGAMGSTSV PRSVSVSDAI TLFEQKSRSS STSMSRSSSR SVIYMNTTSS PSGSGNAVKS ESRIKHPPRS PSNTAVSISG DAQPQLAEVS VSSKSRSMDV ASDTGEANEI GVRGVPTIRP QRSASRPMVP KRVASNTSAT TSASRTPPAS PRNHPGRSIS NVSSSSSRAS LANGSASNKA IGIGIGVPST VRSRDARRAS DTASIRPRSP RTSYIAPNRQ PFPHSISAPR SLSSQSYGVE HDDFSPRSER SQSPFHLQPA ISVSQATPEK LLPPLYMQSS RSDLPRRTNG IPIPLSRHTS ISSTPSAYYT PPSSKSPMSS ELEQKGEDVT KSSILDGYFR NSFGRDSSFG PEPITLATTL EQTRSDLSIA PDMDRRSSAM ELYRRKDSSG SITSFVASQR SSKPLPSLDV PLGDPITIAS PQQIPAAPAL HHASLTSSLN VGTMASNPEL TQPLRSTTPT ESQSQPPPRK SPRKPPPPNL GITPPNPASL LSTPNPSGSA TPAATPPVPL KSPLRSISGG SSVTSYNSYS SVEIPGEISV ETGIGLGFEG KLGLEVEGKV EKVRRVKKLA SMDSIIANAG TPLTSQTRMT RLVSATADDH TSQSPSQKDV NALKKPDDAR FTMLTAPSIY SQDSAPSSAT SSAGLTDSPT ESTSTAGKAG SGNASESTKG SGRRRPMSGV FTQMAVGWGK MKEEREKRKS VDLGNSGHRR SSSLPRPKLV LPDEGFLTSV ASNFSTRPTL GHTPLSSVPP SSLGARPTDR SHGKSPSLPI LRRYPTSPTS TDPTSKGNSI PPPSPRRAET STALSSFLSP SSTTSPATSG VSKRSHLLRE IATSERAYAR DLKLFREGSL SSMSSSASVS TSDSDKSKRR SMYMSHTQSL SVSQTSSTQR EALPKSPSEG MNLTLQAAPP VGAMSPPVGK PLSPADVKAV FLNLDQLAAV AEELATKFEE AVGEDEEEGR ECEGGSDRMG EVFVSMVPKL QPLYSYFCAR QSSASRHLMT LQSNPSHFTY LSQRWSSIST QTRAWNLDSM LIKPVQRITK YPLLFEDLLK MTTPVHADYF KIREAKEMAR GMAVEIDEGK RRKEAVENAI GKKNMMAQPT VKDTKNLVSK TQGSKLLGLK RFRKDKPRAP SSSTPDLVSP QQIAQSSLNQ LSELSARLTA LDEGVRKIGQ EIMLWTAAAK ETFVAQDDLV KTWLHVVQLE PTDPTDQRML EMRRVIDGIV SEAWGGLNME VEDLIIPILS NLLNSTSNPR RVLSKRSAKH PDYTRYHAFR VSKRTPDRDI VQGALEFVAL HEQLIEELPT FLEGCLRILD IAVVGFARAQ AKYFRTTRDR LRAFAEGWIQ SPLGASLATG GSSGESNVVA GADIVKAWQE SWEPYAEAMD NAFSPPSSRP ESPAFSVPTR VRSSSLRDSF TTAPTIITPH TSSSTFASYG SQALSKDSQS AGRFNLLRRS SSKNNTNAPS RPPSRPTHSR RGSGLRPASL ASDSSRLSWG LPQIPAEGAG KIFDSLGFSP TDSFSLMSAT SPTSASSRIE EMAERSPHLG ASAPEFSSLR MSPYSPNGAF VGQVPMPKHP FAVSPASETC SRSGSRADAR RMKGGEIDVA EGWRNEKVIY QCACVADFEP IELGNKKYRG LWFLPMMVGD LIDVFHEVGR IEELPSFPYP EVGVENDGIL VGRAENGEIG LVICSFLEPL R
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