| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNL05600 |
|---|
| Symbol | |
|---|
| ID | 3254933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006681 |
|---|
| Strand | - |
|---|
| Start bp | 567256 |
|---|
| End bp | 569092 |
|---|
| Gene Length | 1837 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | |
|---|
| GC content | 56% |
|---|
| IMG OID | 638254036 |
|---|
| Product | pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor, putative |
|---|
| Protein accession | XP_568096 |
|---|
| Protein GI | 58261372 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GCAAAACCCA CAATGGCTTC CACGATCACA CGCAGCATCC CCCGCGCACT CCGCGCCCGC
ACCGCCCCCC TCTCCACCGC CGCGCGGCTC GTCGCCCGGA ATGCCCTCCT CACCACCGCA
GCGCCCACCG TCCCCAGGAG CCCTGCCAGG TTCTTGCTCG CCGAGGGCCA GAGGAGGGCC
GCCAGCTCCG ACGAAGGCGT CACGATGATG GTGCGTGTCG TCTGGGATCT CGATAATGTC
GCATGCTGAC AGTCCTGCGT GTGGTGCGAA ACAGACTGTG CGAGACGCGC TCAACCAGGC
GATGGAGGAG GAGATGATCC GTGACGAGAC CGTCTTCATC ATCGGCGAAG AGGTTGCCAG
GTACAACGGT GCTTACAAGG CAAGTTTCGT CTCGTGCTGT TTTTTGTCTC GAGCGGGTTG
ATTAACGGGC ATTTTTTTCT TTCTCGGTAG ATCACCAAGG GACTGCTGGA CAAGTTTGGA
GAGGACCGGG TCATCGACGT GAGTGGACCT GGTTGTCGGG CTTGAAAGGA GATTTTGACA
TGAAACGTGC AGACACCCAT TACCGAGGCT GGTTTCACTG GTATGGCCGT CGGTGCCGCC
CTTGCCGGTC TCCGACCCGT TTGCGAGTTC AGTATGTGCC TCTTTCCCCC GATGATCACC
TTGGCCCAGC TAACGGCTCG CGACCACAGT GACTTGGAAC TTTGCCATGC AGTCTATCGA
CCAAATCGTC AACTCGGGCG GCAAGACCCA CTACATGTCT GGTGGTAACG TCCCCTGTCC
CGTCGTCTTC CGTGGTCCCA ACGGTGCCGC TGCCGGTGTC GGCGCTCAGC ACTCTCAGGA
CTACTGCGCG TGGTACGGAA GTGTGCCCGG TTTGAAGGTC ATCTCCCCCT GGAGTGCGTC
CGACTGCAAG GGCTTGTTGA AGAGCGCTAT CAGGGATTCC AACCCCGTAC GTCGGGCCTC
GTTGTCTCCT TTTCCGTTTA CAGCGCTGAT CTAATCGACC GTCCACAGGT CTGTTTCCTC
GAGAACGAGC TCCTCTACGG TGTCCAATTC CCCATGACCA AGGAAGAACT CTCCGAGGAC
TTCCTCATCC CGATCGGCAA GGCCAAGATT GAAAAGGCCG GTTCCGACGT CACCATCGTC
GCCCACAGCA AGATGGTCAC CCACTCTCTT GAGGCTGCCG AGTTGCTGGA GAAGGAGGAA
GGTATCAAGG TCGAGGTCAT CAACCTTAGG AGTATCAGGC CGTTGGATAT TGAGACTATC
ATCACGAGCG TGAAGAAGAC CAAGCACCTG ATCACCGTTG AGGGTGGTTT CCCTGGTAAG
TCTCGTTTCG TTTTTTTTCG ATTGATTTGC TTAAAACGTG TGTAGCGTTC GGTGTCGGTT
CCGAAATCCT TGCCCAGATC TGCGAGTCTA CCGCTTTCGA CTTCCTCGAC GCTCCCCCTG
AGCGAATCAC CGGTGCTGAC GTTCCCACTC CTGTAAGCCT TGATTGTTTT CTCTCCTTCT
TCATACATGG CTGATTTGAC TTTTCTTTGT AGTACGCCGA GTCCCTCGAA ACGATGGCTT
TCCCCGACAC ACCCTTGATC GCCAAGGTTA TCAGGCGTCA CCTCTGTACG TCGTCCTTCT
TCCTCTGTCC CTCTTCTTCT GAGCGATAGA TGGCTAATGA CTTTTTTGAG TGTAGACCGC
CAATAGATTT AATTAAACCC GGCGTGTAAA ACAAAATGTT GGATAAGAGG CGTTTGGGAG
AGAGGAGCAG AGCGAAGGAT GGAGCGGGGG ATGTGATGGA TGAAGAGGGG GGCTCATTTG
TTTGGGTATG ATTGTAATGC ATCACTTTGG GTGTTCT
|
|---|
| Protein sequence | MASTITRSIP RALRARTAPL STAARLVARN ALLTTAAPTV PRSPARFLLA EGQRRAASSD
EGVTMMTVRD ALNQAMEEEM IRDETVFIIG EEVARYNGAY KITKGLLDKF GEDRVIDTPI
TEAGFTGMAV GAALAGLRPV CEFMTWNFAM QSIDQIVNSG GKTHYMSGGN VPCPVVFRGP
NGAAAGVGAQ HSQDYCAWYG SVPGLKVISP WSASDCKGLL KSAIRDSNPV CFLENELLYG
VQFPMTKEEL SEDFLIPIGK AKIEKAGSDV TIVAHSKMVT HSLEAAELLE KEEGIKVEVI
NLRSIRPLDI ETIITSVKKT KHLITVEGGF PAFGVGSEIL AQICESTAFD FLDAPPERIT
GADVPTPYAE SLETMAFPDT PLIAKVIRRH LYRQ
|
|---|
| |