Gene CNL05560 details

Gene Information

• Locus tag: CNL05560
• ID: 3254858
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006681
• Strand: +
• Start bp: 554544
• End bp: 559364
• Gene Length: 4821 bp
• Protein Length: 1486 aa
• GC content: 53%
• IMG OID: 638254032
• Product: SSK22 like MAPKK kinase, putative
• Protein accession: XP_568092
• Protein GI: 58261364
• COG category: [K] Transcription; [L] Replication, recombination and repair; [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG0515] Serine/threonine protein kinase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCAACC CGACGTCCCC CACAGACCCC CCAGACGCCG GCCCCCCAGC GCCCGCCATC 
GCGTCCTCCT CCAAGACCGG GCGCAGGTCC GTGCGCCTCT TCGCGCCAGA CGAGGAGGAC 
AGCTCAGACG AGGACGGCCT CATCGGCGTG CCCGCAGAGA CCACATTCAA CGACGACGAG 
GGTGAGTACA CCCCAGGAAG CACACACGCT CACACCCCGC AGTCCCCCCT TCCAACACAC 
GCTCCGCATC CTACCCCGGC CCGCCAGCAC ACACCTCCCC CACCTCCAAA ATCTCATCCA 
TCGTTTCGTC CGCGTCTGCA GCCCAGCCAA AACTCGCACG TTCAATAACA TACGTCGCAC 
CCAGCGCCAT CTCCTCCCGG CCGGCATACC CGCTCCATCC CGCTGGGCCA GAGACGCTGC 
ACGCCTCGTA CGAGACATGG CGGAAAACGC GATATACCCT CGAGTCGTTC AGCAGAGCTA 
AGGCAGACGG CAAGAACGCG GCGCAAAGAG GAAGGTCGTA TACTGACCCC GATGTGGGAT 
ATTTCAGCCC GGACGCAGGA GATGATGGCT GGGGCTCAGA TGATGAGGAC GAACTGAGAT 
CCCCTGGCTG GGGTATATCT CATCATAACA TGGACTCTGG AGGCAAGACG GACGGGTCAC 
CGCAGTTGCC TATTAAGCCT GCCGATGTCA CCGAGGACGA GGGACAGGAA CGTTTGGATT 
GGCAAGGCAT GTTGGAAAGT GTCCTCAACT CGGATGTCTT CAAGGTGGAG GAGCAACGTA 
TCTACAATTC CATGCCGACA GATTCATTCA GAGAAGAGAT TGGAAAGACC CTTTGGTGGC 
AAATCCGTGC CAAGCTGCGT GGGAGGACAG AGGCAGAGGA GAAGAAACGG GTGCAAGAGC 
GACGGGCAAG AGTGGTGGAC CCGGTGCTCG AAGAGATAAA CGAGTTCAAG TACGACCCCA 
AAAATAACCC GGAAGGCGAA GAAGACAGTG ATGCCGATCC GCAAGACGCG ACGTCGACTG 
CTGCACCCCA GTCCAAAGCT CTCAACCAAG TCAACACCAT TCTCGCCAAA CTCCATGCAG 
TCAAAGGTCT TTATCCCAAC CTCGCAGCCA TGCGGGCCGA CAAGTCTCTC TATACCGACG 
AAAATTTCCG CAAACGCGCC GACGCCCTGA CCTCTTGGTC CATTATCGTC TCATCCCTCC 
AAACCCAGCT CAAACTCTTG CAAAAATGGA CAGGTTCCGA TGAGCTCGAC ATCACTAAAC 
CGAACACGAC CCACGAGAAG GCATTGGTCG GCAAGTACAA GTATCACCAC TCTATCGACA 
GCAAGGGTAC ACCCGGCAGG GATGCAGCCG ATGACTCGAG TTTCCTCGAC CGTGTGATAA 
AAGAAGATAA TCTCCAACGC ACATTCGAGC GCCGAGCGTT TGTAGACATG ATCAACCTCG 
TGCGCAACGC CAAGGAGACG GTCATCAACT ATCTCCCGCA GTTTCAAGAA CAAAATCTCC 
CCGATTTCCA ATACGAAATC GTCCGCCTTA TCGGTTTCCC CGGTCGACTT ATCATTGAGG 
CTGTCAAAGT CCGTTTGGAC GCGGCATCCC GATTACTCGA CCCGAACCCT ATGGTCGTCG 
AAGACTTTAT CGAAAACCTT CGTCTATCCA TTTCGCTCGC TGTGCTAATC CGGAAACAAT 
ACGACGAAAT CATGGCACCC GACGCCGAGG GGAGATGGAA AATTCCGCAT TGCTTGCCGA 
CAGAGTACAA TGATGTTCTG CTCGATGCGC TGAGGACATT TTTCAAATTG TTGCATTGGA 
GATTACGAGG AGTGGGGAAA GCGAGTTATT ACAAGGAAAC GGAAGTGCTG GAAGAAGAGG 
CGCCATTCTT GTATGAAGCA GCGGAGGCTA TTGTGGGTGG TGATATGGTT GTTGCAGAGC 
AGTATTGGTG CGTTTGAAGT GTATTATCCT GAAAAAAAGA GCTTTAGTGC TAAGTATCTG 
TGTCAATATA GCGCGTTATC CAACAAGCTC CTTATACGTT CGGCAAATTA TCTGGACCAG 
CAACTTCGGG TACCAATTCA TTCCCATTCT CGCGACAAGG AACGTGGTGG CGACAAGGAG 
CGTGATGGCT CGTCATCCTC TCAACGTGAC CGTAACCGTG ACGGCTCGCT GGCCGGCCCA 
CCGAAACACA TGAAAGTCGA AGAACTCTTC TCATGGTACT CCAAACTCCT TGATTCAGCT 
CGAATGCGAC ACCGCAAGAC CCAACGTTTC TGTCGTAAAC TCACCCAACG ATTCGATAAT 
TCCGCCGAAT ATTCCATCGA GGAGACGGAT GTGGACGTGC TGGTGGAGAC ATTGCAAGAT 
ACAGGTCATT TCTTGGTGTA TACCGGGAAA TTCGAGGCGA ACGGGACGTA TATCGTTGCG 
GATGGCAGTC TCTGGGGTCA GCCGGACGAT GTGAGACACT TGTTGAAGAG GGTGTTTTCA 
GTGACGATTC CTGGATCCCG AGTTCGTCCA AGGCAGACTA CATCGCAGGT ATCCGGCGGA 
GGTGGGGTCC TGGCCAACGG CCAAGTCGCA GCAGCGCAAC CTGATCCTGC AGATCCGTAC 
CCGGAAGCAG ACGATTTTGA CGACGAAGCG CTCGCGGCTT ATATCCTCCT CATCTCCCCA 
CGCCAAAACT TTGTATGGTC CGGAGCGGTC ATGACGCTGG ATGTGGATTA CATCGACTAC 
GAACTAGCTG ATAACCGGGT CAGACTCATC GCCGACGGTC CTACCAAACG ATTAGCGCTG 
TGCAAACACT ATTTCACGCA AGCGCTCATC CACCCTGACA CGGGCGAAAC AATCGATTTG 
CCATGTGTGG TTGAGGCCCA AGCGCATTTA CCGACGATTC AGAAACAGCT TGTCAAGATT 
GCCAAATCGA GTTACCGTCT TTCAGAGTGT ATCGTCCAGT CTGCCCCGCT CGTCCGCAAT 
GCGTTCAGGG GCAAACCGGG ATCACAAGAG TTGGTCGAGA ATTGGTACAG TTTTGCGACA 
GAGCATGGGA CGAGGGTGTT GGTCCATATC GAGCCCAGTG CGTGGGATCG ATTTAATCGG 
CTGTTGATGC GCCTGGCAAT CAGTTGGATC AGCTTTATCA GTCAAGAGTG TAACCCCACA 
GACCGCAAGA CGTTCCGATG GACTGTGGCA GCTTTGACCT ATGCGTTCAA CATGACGAGA 
GGGAGTAACA TTCTCGCGCT TGATCGATCG GAATTTTCAC TCTTGAGGAG GTACGTCGGT 
GTTTGTGTGT CACTCTTGGT TAGCCACTTT GATATCCTCG GCGCAAGGTC GAGTATGGAG 
GCCAAAAAGG AGGCGGACAG GATTGAGGCA ATGAGGAGGT TACAACGGCT TCAAGAAAAC 
CTGGACGACG AATTCCTGCC TCGGACACCG ACAGAGTCTG GCGGCCAACC ACGTATCGAC 
CGCTCTATAA GACTCACGGT TGAAGAACGT CTCCGTCTCA TTGCCGAGCT CGAAGCTCGT 
CGTTCCGAGC TGGCACCCGC ACCCGTCGGT CAAGTCCTTG ACGAAGAAGT CTCTGAAGAC 
CGTGCGCTGG TATTTCTTGC AGCTTCCAAA TCCAATATTT CCATGCGATG GCAGCAAGGC 
GCGTATATCG GTGGAGGCGC ATCGGGAAGC GTGTACTTGG GATACTCGCT GCAGGATAAC 
ACCGTGTTTG CTGTCAAGAT CTTGCCAACG GTGGATCTGC AGAGTAGTCC GGCGTTGTAC 
GAGAGTATCA AGCGGGAATC GGATGTGATG AGCTTGTTGA GTCATCCGAA TGTCGTTGGT 
TTCCTTGGAT TGGAAGTGCA TAGGAACAGA GTCTGTCTTT TCCAAGAGGT AAGGTGTTCC 
CATTTTGTGT AAAGGAGGGT GTGTCGTGCA AACGCTGATG TTACGTGCTT TTAGTACTGT 
GAAGGAGGAT CGTTGGCAGG TATGCTCGAA TATGGCAAAA TTGACGATGA GGAAGTCGTC 
GGGGCGTTTA CGATCCAGCT GCTACGCGGT CTTGAATATC TGCACACCAA CCGCATCGAG 
CACCGAGATC TCAAACCAGA AAGTAAGCCT TACACTCATC TTCTTGATCC TTTGTAAACA 
CAATACACTA ACCTCGTTTC GCCGCAGATA TTCTCATTGG CGCCAACTCT GTTCTCAAGC 
TGGCCGACTT TGGTACCGCC AAAATCATCA AATCCAACAA GACACTCGCC CGTACACGTG 
GTGGCGCTCA CGCCAAGATG GAGGGTCTCG AGGGTACGCC GATGTACATG GCACCAGAGA 
TGATCAAGAA CCAGAGGACC GGCAAGCTGG GTGCTTGTGA TATCTGGGGT TTAGGGTGTA 
TCGTTTTGCA GATGATCACT GGTAGGAAGC CATGGAGTTT CTTGGACTTT GATAATGAAT 
GGTACGTCTT TTCTTTCAAT GATGTTTTCC TCATACGAAT TATGAGCTGA TAAGACGATT 
AGGGCTATCA TGTTCCATCT TGGTGCTACA AAGGAGCCAC CCCCTCTACC CGACCCCAAC 
GAGATGTCCG ACCAAGGTAT CGAATTCATT GATCAATGTC TTTCTTTGGA TCCCGAAGCG 
AGACCGGTGG CGAGCGAGTT ATTGCAGGAC GAATGGCTGG TTCCAATGTT GGAGCAGATG 
GTAAGGTTTT GTCTCATGTG TGCGCAAAAA GTTATCAGAA GCTCATCTCC TTTGCAAAAA 
CAGGCCGAGC TGGAGCAAGA GTATCCCGAC GTATTGGCGA TGGGCCAAAG CGATTCACTG 
GTCCCGCCAC CCGAAAACGC TTCTCTAACC AGTAACGCTC CAACTCTTCA AGATGATATT 
ACACCTCCTC CCCTCGAATG A 

 

Protein sequence

MSNPTSPTDP PDAGPPAPAI ASSSKTGRRS VRLFAPDEED SSDEDGLIGV PAETTFNDDE 
VPPSNTRSAS YPGPPAHTSP TSKISSIVSS ASAAQPKLAR SITYVAPSAI SSRPAYPLHP 
AGPETLHASY ETWRKTRYTL ESFSRAKADG KNAAQRGRSY TDPDVGYFSP DAGDDGWGSD 
DEDELRSPGW GISHHNMDSG GKTDGSPQLP IKPADVTEDE GQERLDWQGM LESVLNSDVF 
KVEEQRIYNS MPTDSFREEI GKTLWWQIRA KLRGRTEAEE KKRVQERRAR VVDPVLEEIN 
EFKYDPKNNP EGEEDSDADP QDATSTAAPQ SKALNQVNTI LAKLHAVKGL YPNLAAMRAD 
KSLYTDENFR KRADALTSWS IIVSSLQTQL KLLQKWTGSD ELDITKPNTT HEKALVGKYK 
YHHSIDSKGT PGRDAADDSS FLDRVIKEDN LQRTFERRAF VDMINLVRNA KETVINYLPQ 
FQEQNLPDFQ YEIVRLIGFP GRLIIEAVKV RLDAASRLLD PNPMVVEDFI ENLRLSISLA 
VLIRKQYDEI MAPDAEGRWK IPHCLPTEYN DVLLDALRTF FKLLHWRLRG VGKASYYKET 
EVLEEEAPFL YEAAEAIVGG DMVVAEQYCA LSNKLLIRSA NYLDQQLRVP IHSHSRDKER 
GGDKERDGSS SSQRDRNRDG SLAGPPKHMK VEELFSWYSK LLDSARMRHR KTQRFCRKLT 
QRFDNSAEYS IEETDVDVLV ETLQDTGHFL VYTGKFEANG TYIVADGSLW GQPDDVRHLL 
KRVFSVTIPG SRVRPRQTTS QVSGGGGVLA NGQVAAAQPD PADPYPEADD FDDEALAAYI 
LLISPRQNFV WSGAVMTLDV DYIDYELADN RVRLIADGPT KRLALCKHYF TQALIHPDTG 
ETIDLPCVVE AQAHLPTIQK QLVKIAKSSY RLSECIVQSA PLVRNAFRGK PGSQELVENW 
YSFATEHGTR VLVHIEPSAW DRFNRLLMRL AISWISFISQ ECNPTDRKTF RWTVAALTYA 
FNMTRGSNIL ALDRSEFSLL RRYVGVCVSL LVSHFDILGA RSSMEAKKEA DRIEAMRRLQ 
RLQENLDDEF LPRTPTESGG QPRIDRSIRL TVEERLRLIA ELEARRSELA PAPVGQVLDE 
EVSEDRALVF LAASKSNISM RWQQGAYIGG GASGSVYLGY SLQDNTVFAV KILPTVDLQS 
SPALYESIKR ESDVMSLLSH PNVVGFLGLE VHRNRVCLFQ EYCEGGSLAG MLEYGKIDDE 
EVVGAFTIQL LRGLEYLHTN RIEHRDLKPE NILIGANSVL KLADFGTAKI IKSNKTLART 
RGGAHAKMEG LEGTPMYMAP EMIKNQRTGK LGACDIWGLG CIVLQMITGR KPWSFLDFDN 
EWAIMFHLGA TKEPPPLPDP NEMSDQGIEF IDQCLSLDPE ARPVASELLQ DEWLVPMLEQ 
MAELEQEYPD VLAMGQSDSL VPPPENASLT SNAPTLQDDI TPPPLE