Gene CNL04450 details

Gene Information

• Locus tag: CNL04450
• ID: 3254727
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006681
• Strand: -
• Start bp: 233836
• End bp: 237342
• Gene Length: 3507 bp
• Protein Length: 1097 aa
• GC content: 49%
• IMG OID: 638253916
• Product: White collar 1 protein (WC1), putative
• Protein accession: XP_567995
• Protein GI: 58261170
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTTCC AAACTCCTCC TGGAGTTCAA GGCAATTCGT TGGGGCCGCA TCGCTCGCTG 
AGTAGCTTGG AGAATGGCCA ACCAGGACGG GTAAGCGGTC ATAGCATGGC AACCCCTAGC 
GTCGAGCCTA GCAGCTGTCC TGGAGATCAG TATCAGTCTT TTGCACAAGG AATTGCTCTC 
TCTCAAGCCT CATCGTCAGC AATCAATTTT CAAGCGCCTC AACCACGAAT CGTAAGGCCA 
AGTCAGTTCT CTACATCACA GCAGTACGCT ATAGACTCCT CCCCGCGGCA GAGTCAAGCA 
TATACTTCAC CAAATTTCCA ATTTCATCCC TATGCTTCTC AACAATATTC GCATCATCCA 
TCACCTCAAA TATCCTCTCC CCACACTCCC GCGGACCAGC TGTTCAAAGG CAAATCTCCA 
GCCTCCAGTT CCTCACATAG CCACTCAAAT CTGACACCGG GTAGTTCGGT CCAGCCATCG 
CATCCAGAAC CGCTTCGTAG AACCAGTGGC GACATGAGGC CGTCAGACGA TGGCGACAGT 
GGTTTGTCTC TTGACCTGTC CAAATTTCCG AGGGATGTAC GCTTTCAGGT TCCTTCCTTT 
CCGACAAATC GTGCGCCAGG AGCTCCTCCA GCTGGTAGTC AAGCTTGGAC TGAGTATTCA 
AACACCTCTG TTCAGAGCTC TGATGCTTCT CAAACTGCGC CAGGAGGCTT GTTCGCACGC 
GCAGCGTGTG TAGGAGGGCC AGCTTGGACC ATGGCTCCAG ATCAGGGGCG GCCCTTTGGC 
TCAAATGAAA ACGCTGGTTG GAACAGGTGG GATCAAGCTC AAATGAAGCA GAACGGATTA 
AGTATGGGTG TAGGTGTAGG AATGGCTATG GCTCAGATGG GAACGGTTTA CGTCAACCCT 
AATTTGAATC CTGCCGTTTA TGGTCAAGGA ATCCAATCTT TTCCGTCTAA TGGTTATTAT 
GGTGGTCAGT ATAATTTACA ACAAGGCCAG CATATGCAGC AGGAAAACGA GTCAGGTGGT 
GGGGAGGTGG GAAGCAGAGA TATTGCGATG AACAGCCCCC ACCAATATGC GGCCATTTCA 
GGGCCGATTT ATGGTCCCGG CCCACCTTCC AGTAATCACT TTAGCTCGCC TGGTAACCCT 
CATCTACAGC CACATACATC GCCTTCATCA CATCGGGCGC CATCCCCCCG TCCGTCTCAC 
GATCAAACGC ACGCCCCTAA CATGATGTCC ACCTCGGCTA TCCTTCCTCA GCGCCCTTCC 
TATGATCAAA ATATCTCGGA TCATCGACTT CCCCATCAAA TTGACTTCTC CAGTGCCGCC 
TCTGTATCTA ATCCAAACCC ACACCGTCGT GAGATGAACT TTACATTGTC ATCTACGACT 
TCGTATGTAC ATTCAGCCGA TGGCCGAGCC CTTCTACAGC ACCCACTACT ATCTCCCGCC 
CAACAAGCTT TACAAGATGG CCCAGGTTTG TATTCCACTA CCGGCTTTGA TATGCTTGGT 
ATATTGGGAA GAGTAGCAGC CAGAAAGAAT CCCAGCATGG TGATTGGACC TGTCGACCTG 
AGTTGTAGTT TCGTAGTGGT GGTGAGATAT TTGCGTCATT TGATAATTAC TTGACGCTGA 
TGTAGTCTCC AGGATATAAG GAGATATGAC TCTCCCATTG TCTACGCTAG TCCGAATTTC 
ACCAGGTTGA CTGGTTACGA GCTTCCCCAA CTTCTCGGCC GTAACTGCCG ATTCCTCCAA 
AGTCCCGATG GAGAAGTGAC CAAAGGCTCC AAACGTGAAT ATACGGATAA TGAGGCTGTC 
TATCTCCTCA AACGATCTCT CGAGGCTGGA AAGGAATGTC AAACCTCTCT TATCAATTAT 
CGACGGAATG GCGAACCTTT CATCAACCTT GTCACTGTTG TGCCTATACC GTGGGACGGT 
CCTGACATCG TCTACCATGT GGGCTTCCAA ATTGACTTGG TTGAACAGCC AAACAAAATC 
CTCCGTAATA TGCAAGATGG GAACTATTCA GTGGACTACA CATATTCCAT CCCACCTGAA 
AAACCTCTAC AGCTTGATGG AAAAGGTGCT GCCATAGCAG GCCTGAGTAC AGCCGTGCTG 
GACATTATGG GCAGTAGGAC GAAGGCACTC GCGGCGGGTA CGGAAGAGGG GGCACGAATG 
GAGTGGTTTA AGATGATTCT GGATAATACG GATGGTAAGT ATTGTGTCAC ATGTTGCCGT 
CAATGTACAA GGCTAACACA ATTTAGACTT CATACATGCC TTATCACTCA AGGGTTTCTT 
TCAGTACGCT TCATCTTCCA TTCGACGTTC TTTAGGGTAT GAGCCTGAAG ATCTGTTGAA 
CAAAAACATC TCCGAATTCG CACATCCGTC TGATATCGTG CCCGTCATCC GTGCCCTAAA 
AGATTCCACA CAAACGATTG GGGAGGAGCA GCAACCAAAA CCTGTTCATT TCACCTTTCG 
CATCCGCACG AAGAACTTTG GGTACGTGTG GGTGGAAAGT ATGGGACGGC TTGTCGTGGA 
AGCTGGCAAA GGTCGGAAGG CTGTCATCCT TTCTGGGAGA GTGAGGAACA TGCCCACTTT 
GAGCTGGGGC AAGGTAGCAG AGCACGGTGG GCTCGCCAAA ACGGAGTTCT GGGCCAAGAT 
TTCATTCCAA GGTTTACTCC TAAATCTCAC TTTTGGCGTT GACAAGGTCT TGGGCTACCA 
AGCTGAAGAG ATTCTGGGTA GAAACTTATT TTCTCTTTTG CCTGGTGGCC AAAATACCCC 
TCCGTCTGGC GAACATCTCA TTAATAACTA TGCTTCAGCT CCCGATATCG CTCCTGTTGC 
CAAGGCAATC TATCAAACCA TACATGACAG TACCCACCGG GGCGCGTTGT CTATTCGGCA 
AAAGATGGTA CATCGTTCTG GCCAGCCTGT CGACGTGATT CTGGTCTTTT ACGCTCCAGG 
GCAAGCTAAA GACAAGCAAT CGCCCATTTC TTACTCAAAT AATGACGAAT CGGCTTCAGT 
CAATTTTATT GGCACACCAA ACGGAGCTTC GACCTACCCG GTCAAGATTA CCGATATTTT 
CGTCCAGGTC AAATTGCTGT CATCCTCCCC TTCGCATCAA CGCTCCGTCC AGCCCCCCTC 
AATCGCTTCA CTCACTCAAG CCCGCCCCCT CGTCCATCTA CCCAACGACA ATATTTTTGA 
AGAGCTGGAG ACTGGGAGAG ACTCTTCGTG GCAGTATGAG CTTCATCAGA TGAAGATGAC 
AAATAGGAGG TTGAGAGATA GCATTGCGGC TCTCAAAGAG AAGAAGGCTG GGAAAGCGAA 
GAAAAGAAAG TACAACATTG TGGATGAGAG TCCCGAAAAC CAATCAGAAA TCATTGATAC 
GAGCTTAAGC TCGCAAATTG GGGGTATTGG ATTTTGATAT GTGCATGAGA GGCAAGCCTA 
CTGCTACTTG CGTGATTTGC TGTATTGTCT TCAGTTTGTT TGTTGTACAG AATCGTCGCA 
AGTTTTTAGC TTTGCATAGT TCAATGC 

 

Protein sequence

MNFQTPPGVQ GNSLGPHRSL SSLENGQPGR VSGHSMATPS VEPSSCPGDQ YQSFAQGIAL 
SQASSSAINF QAPQPRIVRP SQFSTSQQYA IDSSPRQSQA YTSPNFQFHP YASQQYSHHP 
SPQISSPHTP ADQLFKGKSP ASSSSHSHSN LTPGSSVQPS HPEPLRRTSG DMRPSDDGDS 
GLSLDLSKFP RDVRFQVPSF PTNRAPGAPP AGSQAWTEYS NTSVQSSDAS QTAPGGLFAR 
AACVGGPAWT MAPDQGRPFG SNENAGWNRW DQAQMKQNGL SMGVGVGMAM AQMGTVYVNP 
NLNPAVYGQG IQSFPSNGYY GGQYNLQQGQ HMQQENESGG GEVGSRDIAM NSPHQYAAIS 
GPIYGPGPPS SNHFSSPGNP HLQPHTSPSS HRAPSPRPSH DQTHAPNMMS TSAILPQRPS 
YDQNISDHRL PHQIDFSSAA SVSNPNPHRR EMNFTLSSTT SYVHSADGRA LLQHPLLSPA 
QQALQDGPGL YSTTGFDMLG ILGRVAARKN PSMVIGPVDL SCSFVVVDIR RYDSPIVYAS 
PNFTRLTGYE LPQLLGRNCR FLQSPDGEVT KGSKREYTDN EAVYLLKRSL EAGKECQTSL 
INYRRNGEPF INLVTVVPIP WDGPDIVYHV GFQIDLVEQP NKILRNMQDG NYSVDYTYSI 
PPEKPLQLDG KGAAIAGLST AVLDIMGSRT KALAAGTEEG ARMEWFKMIL DNTDDFIHAL 
SLKGFFQYAS SSIRRSLGYE PEDLLNKNIS EFAHPSDIVP VIRALKDSTQ TIGEEQQPKP 
VHFTFRIRTK NFGYVWVESM GRLVVEAGKG RKAVILSGRV RNMPTLSWGK VAEHGGLAKT 
EFWAKISFQG LLLNLTFGVD KVLGYQAEEI LGRNLFSLLP GGQNTPPSGE HLINNYASAP 
DIAPVAKAIY QTIHDSTHRG ALSIRQKMVH RSGQPVDVIL VFYAPGQAKD KQSPISYSNN 
DESASVNFIG TPNGASTYPV KITDIFVQVK LLSSSPSHQR SVQPPSIASL TQARPLVHLP 
NDNIFEELET GRDSSWQYEL HQMKMTNRRL RDSIAALKEK KAGKAKKRKY NIVDESPENQ 
SEIIDTSLSS QIGGIGF