| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNK01600 |
|---|
| Symbol | |
|---|
| ID | 3254570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006680 |
|---|
| Strand | + |
|---|
| Start bp | 471376 |
|---|
| End bp | 473405 |
|---|
| Gene Length | 2030 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | 638253649 |
|---|
| Product | RNA binding protein, putative |
|---|
| Protein accession | XP_567834 |
|---|
| Protein GI | 58260848 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1499] NMD protein affecting ribosome stability and mRNA decay |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.20499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGGCAAATAC ACTTTCAACA AAGTATTTAA AATGGTGGCA ATGGAGTACA CCCCAGATGC
AGCGGGGCAG GAGAGCTACA TTCTATGTGC CGACTGTGGG ACAGTCATCT CAAGTGCCAA
CGGCGCTGGA CTTTGTAAGA AATTATCTGC TTGCGACTGG TACAGTAGCT AATGAGAGTT
GGTGAAAGGT GTTGGTTGTT TGAGAAATAC TGTGGATATT ACCGAGGGCA TCCCCAAAGA
AGCCACACTC AACTTTTGTC GAGGATGTGA AAAGTTTTTG TCGCCACCCA ATACCTGGAT
TGCCGTTCAG CCGGAATCTC GAGAGTTGCT TGGTAAGTGA AATGATTGTT GTTGCAATGG
CGCGAGAGCT CATCGCCATT TCATAGCTAT CTGTCTTAAA AAAATCGCCC GGCCTTTGAT
GAAGGTTCGA CTCATCGACG CATCTTTCAT CTGGACCGAA CCCCACTCCC GACGTATCAA
ACTCAAGATT ACAATTCAAA AAGAAGTTCT CGCCCATACT GTCTTGCAAC AAACTTTCGA
GCTTACTCTC GTTGTTCACA CCGGGCAATG TCCTTCGTGT ACAAGGTTAG CAGCAAAAAA
TACCTGGAAA GCCAGTGTAC AAGTTCGACA GAAGGTCACG CACAAGAGAA CCTTTTTGTG
GTTGGAACAG TTGATCTTGA AGCACAATGC CCATAAGTGA GTCTTGCTAT GTTCTGCTGA
AAGGCTCATG CTAATAAAAC GCTGTAGGGA CACAATCAAT ATTGCGGAGA AGAGGGACGG
CTTGGATTTC TTCTATTCCG AGAGGAACAA TGCCATCAAG ATGTGTGAAT TCCTTGCTGG
TGTCGTCCCT GTTAGGTACG GCGTGTTACC GACATCCTGA AAGCGATGGC TCATACATGA
TATTGCAGAG TCAAATCGTC TGAGCAGCTT ATTTCATCCG ATACTCATTC CAACACTTCC
AACTACAAGT TTACTTATTC CGTCGAGATT GTCCCTGTCT GTAAGGATGA TTTGGTCTGC
TTACCCAAGT CACTTGCTCG TGCTTGGGGC AACATTTCGT AAGTTGCAAC TCTATCTCAT
CTGAGATTTG ATCCTAACAT GCCTGCCATC TAGTCCGCTT ACTATTTGCT CCCGTGTGGG
CAACACTATC CACTTGCTTG ACCCAATGAC TCTTCAGCAA ACTGATGTAG CTGCCCCTGT
CTATTGGCGC CAGCCTTTCG ACTCCCTCAC CACCGTTGCG GACCTTGTTG AATTCATTGT
GCTTGACGTT GAGCCTTCAG GGCCAGTCCG AGGCAAATAT GTGCTTGCCG ATGCACAGGT
TACCCGGTCC AGTTCGACAG GTAATAATGC CGATGACGAT GGAATGGGCG ACGATGGTAT
CTACCACACT AGGACTCATT TGGGCGGTAT CCTGCAACCC GGAGACACTG TCCTCGGTTA
TCACCTTACC AACGCCAATT TCAACTCTGA TTCCTTTGAA GCGCTTGAAA GCGGTAGAAT
CCCTGATGTT ATACTCGTCA AGAAGACTTA CCCCAACAGG CGCAAGAAAT CCAGGCCCAG
AAATTGGAAG CTTCGTTCCA TCGCGAAGGA AGCGGAGGAT GTGCAGGATG GTACCGTCGG
TCGAGGTGCC CTGGGAAGGC GAGGAGGTGT GGACCAAAAG AACGTCGAAA GAGACTACGA
ACTATTCTTG CGAGACCTGG AAGAGGACAA AGAGATGCGT GCCGTCATCA ATCTTTACAA
GGCAGATGCG CCAGAGGAAG GAGAAGACGA GGCTATGGCC GTCGAAAAGA AGCCCGGCTC
GGGTCTGCAT GGTGGGAAGA GAAGAAATGG GCTTGCAAAA CAAGCTCAGC ATGGTATGGA
TGTCGATGAC GATGAGGCCG TGGGAGAAGA GGATGAAGAT GACGAGGAAG AGGATTTCCC
TGAAATCGAT ATGGACGAGT TGTTGGAGAA CTTTGAAGAG CTTGACATGG ATGACGGTGC
AGAGGTTCTG TAAACAATCA ATAGTAGTCT TTTTGCCATG TACCGCCGAT
|
|---|
| Protein sequence | MVAMEYTPDA AGQESYILCA DCGTVISSAN GAGLCVGCLR NTVDITEGIP KEATLNFCRG
CEKFLSPPNT WIAVQPESRE LLAICLKKIA RPLMKVRLID ASFIWTEPHS RRIKLKITIQ
KEVLAHTVLQ QTFELTLVVH TGQCPSCTRL AAKNTWKASV QVRQKVTHKR TFLWLEQLIL
KHNAHKDTIN IAEKRDGLDF FYSERNNAIK MCEFLAGVVP VRVKSSEQLI SSDTHSNTSN
YKFTYSVEIV PVCKDDLVCL PKSLARAWGN ISPLTICSRV GNTIHLLDPM TLQQTDVAAP
VYWRQPFDSL TTVADLVEFI VLDVEPSGPV RGKYVLADAQ VTRSSSTGNN ADDDGMGDDG
IYHTRTHLGG ILQPGDTVLG YHLTNANFNS DSFEALESGR IPDVILVKKT YPNRRKKSRP
RNWKLRSIAK EAEDVQDGTV GRGALGRRGG VDQKNVERDY ELFLRDLEED KEMRAVINLY
KADAPEEGED EAMAVEKKPG SGLHGGKRRN GLAKQAQHGM DVDDDEAVGE EDEDDEEEDF
PEIDMDELLE NFEELDMDDG AEVL
|
|---|
| |