Gene CNK00540 details

Gene Information

• Locus tag: CNK00540
• ID: 3254488
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006680
• Strand: -
• Start bp: 178627
• End bp: 180642
• Gene Length: 2016 bp
• Protein Length: 535 aa
• GC content: 46%
• IMG OID: 638253542
• Product: hypothetical protein
• Protein accession: XP_567617
• Protein GI: 58260414
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2814] Arabinose efflux permease
• TIGRFAM ID: [TIGR00880] Multidrug resistance protein

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCATTC CAGCAGAGGC ACAAGTAGCT TCTCCACCCA TTTTCACTGA AGACGAGGAA 
GTCGTCTTGG AAGAGGAGGA TGTCGAACAA CCTGATCTGC GTCGAATCGC CACACATCTA 
CATGACCCAG CCTCCACAGC TACGTTGAGC GATGATCAAG CAGGCACAAC TGCCGGACAG 
ACTGTCTTAT CGCATGATCT GGAGAAGGGG GAGGGTCGTA TGGTAGTGGA TTTCGCAGAA 
GGGCATTATG AAGACCCCAA GGAATGGTCG AAAGGAAAGA AATGGTAAGT TTGACACTTC 
ATCTCCTATG CAAGTTGCTG ATTGCAAGTA GGTTTGTCAC CATTGCAACC TCTATACTTT 
GTCTCACAGT CGCTCTTGGT TCCGCTATGC CCACTGGTGA TTTACCTGGA GCTGCTGAAA 
CTCTCCACGT TTCCAATGAA GCTATCTACC TTACTATTGC CCTTTTCGTC GTTGGTTTCG 
GTGTCGGTCC TCTTCTGTTC GCTCCATGTA AGTTCCTTCT TGACAGGTAA CGGATAGTAG 
CATTGACCTT TCACCAGTAT CTGAAGTCAT TGGACGGAAG ACAGTCTACT GCATCAGTAT 
TTTCTTTTAT TTCATCTTCA CCCTCCCGTC ATGTCTCGCG CCCAATATCG CCACAATGTT 
GGCTGGTCGT ATGGTGAGTC ATCGACCTGC AATCCCTCCA GGCCTTGCTG ATGAAGATTT 
TTAGATCGCC GGTATCGCCT CTTCGGCTCC CATGACCAAT GTGGGAGGTA CCATTGCTGA 
TATCTGGTCG GTTGAGGAAC GTGGTATTCC TATGGCTCTT TTCAGTGGTA TGATTTTGTG 
AGTTAAACGA AGCGGTCGAG AGAGACCCCC GCTGATGCCT TTTTTAGCAT GGGACCTTGT 
CTTGGACCAT TGTTTGGTGG TTGGATCGCT TACAAGACCG GACAATGGCG ATGGATTTAC 
TGGGTTTTGT TCATTTTTGT CGGAGTCGTC TTCCTCTTCA CGCTCGTTAT GCCTGAAACT 
CTCGCCCCTG TCCTCCTACG ACGGAAAGCC AAGAAACTAA ACAAGGAGAA CCACGTTGAC 
TCCTATGTTT CGAAACATGA TCTCCACCAC GTTCCCCTTT CCACCACTCT GAAAACTGCC 
ATGATTCGAC CATTCATTCT CATGTTCATG GAACCCATTA TCTTGTTCAT GAGTTTTTAC 
TTATCTTTCG TCTACGCTCT GCTCTATGCC ACTTTCTTCG CCTTCCCAAT TGCTTTCGAA 
GAAATTAGAG GGTGGAATAT GGGTACCACT GGCGTTAGTT TCGTATCTAT CATCGTAAGT 
TGTCTTTTTC CTGTCATTGT AACATTTGTG CTGATTTCAG CCAGATCGGT ATTGCAGCTG 
CCTTGCTCTG TATGCCCTTT CAAGAAAGAA TCTACAAAAA GGCTTGTCGA AATGGTCAAG 
TCCCTGAAGC GAGATTGTAC CCCATGTTAC TTGGTTGTGT GTAAGTACTC CTGTATGGGT 
GCTGTTCAAT CTCTAATGTA GCCATAGCAT CCTCCCAATT GCTCTTTTCA TCTTAGCTTT 
CACATCGTAC CCTGGAATCC ACTGGATTGG ACCTTGTGTC GCTGGTGTGC TTTTCGGATT 
TTCAATGGTT ATCATTTATA TCTCTGCCAA CAGTGTGAGT TTCCATTATT GTATGTCTTT 
TTTTTCCACA CTTTTACTAA CGTCAAACAG TATATTGTTG ATTCCTATGC TTCTTTCGCT 
GCGTCAGCCA TTGCTGCCAA GACACTGATG AGGTCTCTCA TCGGAGCCTC AGTTCCTCTT 
TGGATCACTC AGTTATTTGT GAGTTGTTAA TGACATTTCA CAGGCTGGAA TCTAACTAAC 
TCTTTCTTCA ATCAGCACAA CCTTGGGTTC CAATATGCTG GTCTCTTTTT AGCACTCATA 
TCTTGTGTTA TTATTCCCAT TCCTTGGGTC TTCTTCCTCA AGGGTGCAGC TGTCAGAAAG 
CGATCAAAGA GAGCCGAGAA GTCTGGTACC AATTAA 

 

Protein sequence

MIIPAEAQVA SPPIFTEDEE VVLEEEDVEQ PDLRRIATHL HDPASTATLS DDQAGTTAGQ 
TVLSHDLEKG EGRMVVDFAE GHYEDPKEWS KGKKWFVTIA TSILCLTVAL GSAMPTGDLP 
GAAETLHVSN EAIYLTIALF VVGFGVGPLL FAPLSEVIGR KTVYCISIFF YFIFTLPSCL 
APNIATMLAG RMIAGIASSA PMTNVGGTIA DIWSVEERGI PMALFSGMIF MGPCLGPLFG 
GWIAYKTGQW RWIYWVLFIF VGVVFLFTLV MPETLAPVLL RRKAKKLNKE NHVDSYVSKH 
DLHHVPLSTT LKTAMIRPFI LMFMEPIILF MSFYLSFVYA LLYATFFAFP IAFEEIRGWN 
MGTTGVSFVS IIIGIAAALL CMPFQERIYK KACRNGQVPE ARLYPMLLGC VILPIALFIL 
AFTSYPGIHW IGPCVAGVLF GFSMVIIYIS ANSYIVDSYA SFAASAIAAK TLMRSLIGAS 
VPLWITQLFH NLGFQYAGLF LALISCVIIP IPWVFFLKGA AVRKRSKRAE KSGTN