Gene CNK00420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCNK00420 
Symbol 
ID3254630 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameCryptococcus neoformans var. neoformans JEC21 
KingdomEukaryota 
Replicon accessionNC_006680 
Strand
Start bp124176 
End bp128574 
Gene Length4399 bp 
Protein Length1277 aa 
Translation table 
GC content52% 
IMG OID638253536 
Productconserved hypothetical protein 
Protein accessionXP_567611 
Protein GI58260402 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0293] 23S rRNA methylase
[COG0515] Serine/threonine protein kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TCTTTACGCA ACAACACCAA AATATCCCAA GCATATCCGC CACTTTGCCA TCTCCCGAAA 
AAGGGGGACA CTCTCGCCTT CCGCCAAACG CCAGTCAAAT TTCATCTCCC CTCCACTCGC
GAAAACAATG CCCACTTCCA AGTCCTCAAT CGATCATAGG GACGTCTACT ATCGCAAGGG
CAAATCCGCA GGCTACCGTG CCCGCTCAGC ATACAAGCTC CTGCATCTCG ACGAGGAATT
CGACCTTTTC ACCAATGTCC ACACCGCGGT CGACCTCTGT GCCGCTCCTG GGAGTTGGAG
CCAGGTTCTG GGGCAAAAGC TGAAACCGAA GAGTAAACAA GGCGGTGAGG GAACCCGAGT
CGTCTCTTGT GATCTACAAC CTATGGTATG TCCCCATGTC CTATGTTTTC ACGATCCTAT
GTCTCCATCG TCATGAAAGT GCTGATCAGA GGGCATGGGG TCGCAGGCGC CTTTACCAAA
TATCACGACG CTACAAACCG ATATCACTCT TCCCTCCACC ATTCCGCTCG TGCTGGATGC
TCTCGGTGGA CGAAAGGCTG ACCTCGTCGT ATGCGACGGT GCTCCTGACG GTAAGCTCCT
TTCATTTCTC CTCTTCTGTC AGCCTTTGTT AACCCAAGCA TACTTCCGTC GCCACGCAGT
GACGGGTGTC CACGATCTCG ACGCCTACCT CCACTCCCAA CTTCTCCTCG CCGCGCTCAC
GCTGTCGTTA ACGCTCATGG CACCCGGCGC GACCCTGATT TTCAAGATCT TTCTCTCTCC
GCTTGATCCC CGGGCAGAGT TTTTGGCTTC GCAGTTGAGG TGTTTCTTCT CCAGTCCGCT
TCCCGAAGAT AAAGAGAAGG AGGACGAATT TGGACAGTAT GCGGAGTTTG AGGAGGAGGG
GGAATATGCG GAAGAGGCAG GACAGGACAA AGGAGATGAG AAGAAGAGGA ATGTGGGAAC
AAAAGGGTAT GATCCACAAG GACGGCGAGG TGGGGTGTGG GTTAGGAAAC CGAGAAGTAG
CCGTCAAGGC AGTGCCGGTA CGTCTACCTC TTCACGCTCT TTCTTTTTTC TCTCTTTTTT
TTCGCTCTTA CCTGACGTGA GGACACAGAG GCTTTCATCG TCTGCCGCAA CTTTTCACCT
TCCTCCCTCC CCCTCCCGCC GACATTCTCC CCCTCGGCTC TTGACAAACT CCGGACCACC
ACAGGAACCC TCACTCTCGA TTCCCTCTCC TCTCTCGTCC CCCAAGACGA AAGCAAAGGT
GAAGAGATTC AGGGTTTCAA AGGAAGTAAA GAGCAAGTGA AGCAGCAATG GCACAGATGG
GAGATGATCA AGGGGTATGT GGGCGGTGGG GATTTGTAAG TTATTATGCA CAAATCGTAC
AATCTGTCAA GGCAGGAAGA AAAAAAAAAT GTTAAGTACA GACTTTAGGT CATCATCATC
TTTCATTCCC TCCCTTTATC CACTCTTACC ACCATCACTA CCAGCACAGA GTCCAAAAAT
GACATTATCA TCCCCTCCCA AACTCCATCT CCCAATGCCA ACCACCCCAC CAAACCTGGT
ACACCATATC CTGAAAACTC CCGAAATCAT CTCCCCACAT TCATCCACTG CAAGTCCCAA
GGCGCTACAG CCCCAACCGA CGCCTGTCGA CGAGCCGCCA GAATATTTTT CTCCCAAGCG
TGCACATATC CAGGCTCTTT TCTTGTCGCC TACGAAAATG AAAGAACACC GACAAGGACA
AGGACAAGGA CAAGGGCAAG GGCAAGATGG TGGAGGCACT TCGAGACAAA GCTCGTTGGA
TTCGTTGACA CCTAATCCAT CGCCTGTTGG GGACGTCGAT TCAACCCGAC CTTGGACTTC
TTCATCGCCT CCATCTTCTT CCATGTCCGC GTCCCCGCCC ACGCCTGTGC CGCCAACAAT
AACAGCACCG CCCCAAGAAA AGACTTCTTT GAGCATTCCT TTGCTGTTAC ATTCAGCGTC
CACCTCCAGT GCTGTTTCTG ATGGCGGCTA CGGCATCCAC GGTGTCCACG GCGTTCACAG
CGTTCACAGC GTCCACAGCG TCCACAGCAG TCGCCCCCAA ACCCCTGCTA CTCTTGGCGT
CATCACCCCA GCCCTAGCGT CACCGGCGCT AAGCTCGAGT AGCAAGACGG ATTTATTCTT
CTCTGCTTCC TCTGCAGAAT TACCTACGCC TCCCCGTGCG TTATCTCCAG CATCTGCTTT
GGACAAGGAA CCTTTTTCTT CTTCTTCTGC TGCTTCTTCG GGTTTGGATG TGAGTGGTAA
TGAGAGAGCT CAATCGACAA CGATGCCTTC TTCTAGCTTC CCCTCCACGG CCACGTCCGG
GGCCGCAAGT TGGAGCGGAA GTGGGATATC CACTGTAAAA CTGAGGTTAC CCACAAGGAA
AGAGAGGTTT CGAGAGACAG TCATCCCGGC CGAAATGAAG GATGAGATGG ATATAGATAG
AAGTAGGGAA GGATGGGGTG CACCGTTCGG AATGGGATTG GGAGCTGGGT TCGAAGAGAT
TAGTACATCT CGGCTGAGGA GTTTATCAAA TCCTATCGCT CCCCCGCCGG CGCATACTGT
CCCTCCAGCA CCACCCGCGC CTCTACCTGC ACCTCTGCCT TCGTCATTCA CAACGCAGAA
TAGCAGTAAT GACGGGGATA GTCGACCGGA ATTTGCCCGA CAGAGTTCTT TGACGCCGAC
AGTGGTATCG CCACAAACAC CCAGGGCTGG TTTCTTTCCC CTCAATAATG CCCGTACCAA
AGCCAATGCG GTGCCGTCTG TTCCATTCCA TCCTTCCCCT TCTGCGGGGG GATATACACC
TCCACCTCCA CCTTGGAAAT TGAGACGTAA AGAATCTCAA CAGCTGGAAA GGGAACACCG
TCAAGCAGGG GTGGATGAGA GTGTGAAAGC TGGGGATGTG ATCGAACCTT GTTTTCCAAA
TACGAATGCG GATAATAATG GTGAACACGA AAAGGAAAAG CGTAAAGAAA GAGTCATCGG
AGGGTGGAGG TTGGTCAAGA AGATGGGAGA AGGAGCTTTC TCAGCAGTTT GGTCGGCCGT
GCCTGCTGGT TCAACACCCT TATCTTCCAC ACCCACCCAC GCGCCCACCG CTACCAGCCT
CCTCGTCGCA CTCAAACTCT TGACCCACCC GTTGCCTGAT CATCGAACAC GTATCGCCTT
TCTCCGAGAA GCTTCCGTCT TGCGACACAT CTCACACCCT TCTATCGTGG GGTACATTGA
TGATTTCTCA ACGGAAAGAC ATGATGTTTT GGTGTTGGAA GCGGCTGGGG GAGGGGAATT
GTTCGAGTTG ATGAGTGAGG AGGAGAATAG GCGGCGGATG ATCTTGCCTG CGCCTGCGCC
GGTAGCTGGT TCAGAAGAGA GTGAAATGGG CTGGGATAAG GATGGTGAAG GTTTTGTGAG
GAGGGTGTTT AGTGAGCTCG TCAAGGCTGT GGGGTGGTTA CATGAGGTTG GTATAGTACA
TCGCGACATC AAGTTGGAGA GTAGGTACCA TTTACATACC TCCATGTTCG AAAAGCTAAT
GGCTTCGGTT AGACATATTG TTCACCACCA ACCCTTTCAT CCTCCCACCT ACAAGCACAT
CCTCCATCCC ACTTCACCTC CTCCCTCCAC CTGGCCAACC ACTCATCAAA CTGACCGACT
TTGGTCTCTC ACGGTTCATT TCCCCCGCTT CACCTCTTCT CTACACACGA TGCGGTTCCG
AAAGCTTTGC AGCGCCAGAG ATCATCATGG GTAAACCATA CGATGGCCGA GAGACAGATG
CCTGGGCATT GGGTGTGGTA CTCTATGGCT TGATCATCGG TGAACTGCCT TTTGATCGGG
AGGAAAGCAT TAAGTTGCCG GACGGGATAG CGACTCCCGG AGGGGGAAAT AGTGAAAGAG
TAAGAGGGAG GAAGAAGATG CACCGGATCG CCAAAGGGGA ATATACCTGG CCATCACCCG
AACCTGCACT CTCTCAAGAT ATCCCAGGTG CCTATGTGCC GGGTACAGCG ACTCCATCAG
CGCGAGCAGT GATTTCCTCA CTTCTTGAGC GTAGCCCTTC AAAGAGAGCG AAACCAAGTG
ATCTGTGGGA GTATGAATGG ATGCTTGGGC CTGGGGGCGT TCCGCGACCT GTGGAAGGGG
CGGGAACGCC ACAGCAAGAG GGAGTGGGAA AAGATAAGGG AAGGGAGGCG TCTGGAAGAG
GGAGAAGGAG GGTGTTGGAT GGATTTTTAG TGGAAGAAGA GAGAATTGAA GATGTCGCAA
TGACAGAACA TTGAAGAGGG TAAAAGGACA CTTATCTTGT TGCAATGGCG TGAATCTTGT
GTTTAGTTTC ATCTTGTCTT GGGTTAGCGT ACCCTTAATG TCTTTGGGTC TATAGTCAAT
CTCATATATT ACCACTGTT
 
Protein sequence
MPTSKSSIDH RDVYYRKGKS AGYRARSAYK LLHLDEEFDL FTNVHTAVDL CAAPGSWSQV 
LGQKLKPKSK QGGEGTRVVS CDLQPMAPLP NITTLQTDIT LPSTIPLVLD ALGGRKADLV
VCDGAPDVTG VHDLDAYLHS QLLLAALTLS LTLMAPGATL IFKIFLSPLD PRAEFLASQL
RCFFSSPLPE DKEKEDEFGQ YAEFEEEGEY AEEAGQDKGD EKKRNVGTKG YDPQGRRGGV
WVRKPRSSRQ GSAEAFIVCR NFSPSSLPLP PTFSPSALDK LRTTTGTLTL DSLSSLVPQD
ESKGEEIQGF KGSKEQVKQQ WHRWEMIKGY VGGGDLKKKK MLSTDFRSSS SFIPSLYPLL
PPSLPAQSPK MTLSSPPKLH LPMPTTPPNL VHHILKTPEI ISPHSSTASP KALQPQPTPV
DEPPEYFSPK RAHIQALFLS PTKMKEHRQG QGQGQGQGQD GGGTSRQSSL DSLTPNPSPV
GDVDSTRPWT SSSPPSSSMS ASPPTPVPPT ITAPPQEKTS LSIPLLLHSA STSSAVSDGG
YGIHGVHGVH SVHSVHSVHS SRPQTPATLG VITPALASPA LSSSSKTDLF FSASSAELPT
PPRALSPASA LDKEPFSSSS AASSGLDVSG NERAQSTTMP SSSFPSTATS GAASWSGSGI
STVKLRLPTR KERFRETVIP AEMKDEMDID RSREGWGAPF GMGLGAGFEE ISTSRLRSLS
NPIAPPPAHT VPPAPPAPLP APLPSSFTTQ NSSNDGDSRP EFARQSSLTP TVVSPQTPRA
GFFPLNNART KANAVPSVPF HPSPSAGGYT PPPPPWKLRR KESQQLEREH RQAGVDESVK
AGDVIEPCFP NTNADNNGEH EKEKRKERVI GGWRLVKKMG EGAFSAVWSA VPAGSTPLSS
TPTHAPTATS LLVALKLLTH PLPDHRTRIA FLREASVLRH ISHPSIVGYI DDFSTERHDV
LVLEAAGGGE LFELMSEEEN RRRMILPAPA PVAGSEESEM GWDKDGEGFV RRVFSELVKA
VGWLHEVGIV HRDIKLENIL FTTNPFILPP TSTSSIPLHL LPPPGQPLIK LTDFGLSRFI
SPASPLLYTR CGSESFAAPE IIMGKPYDGR ETDAWALGVV LYGLIIGELP FDREESIKLP
DGIATPGGGN SERVRGRKKM HRIAKGEYTW PSPEPALSQD IPGAYVPGTA TPSARAVISS
LLERSPSKRA KPSDLWEYEW MLGPGGVPRP VEGAGTPQQE GVGKDKGREA SGRGRRRVLD
GFLVEEERIE DVAMTEH