| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNA07860 |
|---|
| Symbol | |
|---|
| ID | 3253536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006670 |
|---|
| Strand | + |
|---|
| Start bp | 2169429 |
|---|
| End bp | 2172340 |
|---|
| Gene Length | 2912 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | 638253109 |
|---|
| Product | ATP-dependent RNA helicase ded1, putative |
|---|
| Protein accession | XP_567133 |
|---|
| Protein GI | 58259441 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTTCATTCAA GAAACAAAAA ATCCATATTC ACCACAGTCG CTCTTTTCTA CACCAAGATA
GAGAGCACGC CACACAGAAA ACAGCAACAG CAGATACTCC CTTTGTCAAC ACAAGAAATT
CCTTTATCGC CACTAGAACA CATTATGGCT GCTACCGATG TCAATGGACT CGCGTCCCAA
ATGAGTAAGC TGGTCCCGCT TCTTCGTATC AGAGTGGATA CTGACTTGCC CAGACTCCGT
TAACCTTAAC GGTGCCTCTC AGAAACCTCA GAAACCTGCC TACGTTCCTC CTCACTTGAG
GAACCGTGCC GCTCCCCCCG CCGCTGTCCC TCCTGCGGCC CCCGCTGCCT ACAGGCCATC
TCCCACCGGT CTCCCCACTC CCGCCACCAC CCCTCCTACC AGGCATATTG TGCCTGCCGC
CGTTGCCGAG GACGATGTCG GTGGATGGGG TGCACAACCT CGTGTTAGGA AAACTTTTGA
GCATGGTGCC CCTCCCGGAT TTGGTAGCTG GAAGAATGGC CAGCACGTCG TCGGTGCTAG
GAACACGAGG ATGGAGAAGG AAATGTATGG TGAAGTGGGA GACGGATTGC ACCAGGTGAG
TCGGAACTCC AGTTTTTTTG ATGCAGGAAG CTAGTCTTAC GCGCGGAATT TAGGCCACCG
GTATCAACTT TGATAAGTAC GCCGATATCC CCGTCGAAGT CAGCGGTAAG GGCGTCCCCG
AACCTGTGAC TGAATTTACC AACCCCCCTA TCAACCCCGT CCTTCTCGAG AACGTCAAGT
ACGCTCGATA CGCAACCCCT ACCCCTGTTC AAAAGTACTC CATCCCTATC GTTGCCGATG
GCCGTGATCT TATGGCTTGT GCCCAAACCG GTTCCGGTAA AACTGGTGGT TTCCTTTTCC
CCATCCTTTC AGCTCTCTTC ACCTACGGTC CTTCCACTCC TCCCGTTGAG CAGGACACTG
GCTACGGCTA CAGGAGGACA AAAAAGGTCT ACCCCACCGC CCTTGTTCTT GCCCCTACCC
GAGAACTTGT CTCTCAGATT CACGAAGAAG CTCGTAAATT CGCCTACCGA TCTTGGGTTC
GACCTGCTGT CGTTTACGGT GGTGCCGACA TTGGCTCCCA AATGCGTGCC CTCGACCGAG
GATGTGACCT TCTTTCCGCT ACCCCTGGTC GTCTTGTCGA CTTGATTGAG CGAGGCAAGA
TCAGTCTTGC TAACGTCAAG TACCTCGTTC TTGACGAAGC CGACCGAATG CTCGACATGG
GTTTCGAGCC TCAGATTAGA AGAATCGTTG ATGAGGAAGA CATGCCCGGC GTCCTTGAGC
GTCAGACGCT CATGTTCTCC GCCACCTTCC CTCGAGAGAT CCAGAACCTT GCTCGATCTT
TCCTCAAGGA GTACATCTTC TTGACCGTCG GTCGAGTCGG TTCTACTTCC GAAAACATTA
CCCAGCGTGT TGAGTATGTC GATGACCAGG ACAAGCGCTC TCTGCTTCTC GACTTGCTCC
TTGCCGAACA ATCTGGCGGT TTGATACTTG TCTTTGTCGA GACGAAGCGC ATGGCCGACA
CTCTCTGTGA CTTCCTCTGT TCTCGTCGAC ACAATGCCAC CTCTATCCAC GGTGACCGTA
CCCAGCGCGA ACGTGAAGCT GCTCTCTACG CATTCAAATC CGGTCGAGCC CCCATTCTCG
TTGCTACCGC CGTCGCGGCT CGAGGTCTCG ATATTCCCAA TGTCACTCAC GTCATCCTTT
ACGATCTTCC CAACGATGTT GCCGAGTACA CTCACCGTAT CGGCCGAACT GGTCGTGCAG
GAAACGTCGG AACTTCGACT GCCTTCTTCA ACCGTGGAAA CACCAACATT GGTAAAGATT
TGATTGAGCT CCTCAAAGAG GCGAACCAGG AAGTACCTCA GTGGCTTGTT GAAATCTCCT
CTGAGAGGAG TTATGGTGGT GGTGGTGGTG GTGGGTACAA AGGAAGTCGA GGACGAAGCA
CTGGTGGCGG CGGCGGTGCG AGGTTGGGCG GACGAGATAT GCGTCAAGGT GGCGGTGGGT
ACGGCGGTGG TGGAAGGACT TCTGGGTATG GTGGGGGTTA CGGTGGTGGT GGCGGTGGTG
CCGGATGGGG TAGTGGCGGT GGGTTCCCAC CCGCGGGTGG CGACTCTGGC GCGAGCTGGT
GGTAAGCTGC CATGCTCTCC TGCTAGTCTC CTCTTCCCTT CCATCCCCTC CCCTCCTTCC
TCATTTTCTC CAGTCTTTGA AAGAAAACAG CTCCCAACCT CTCTTCCTTT CGTCCTCGGC
ATTTCAACAC TCTTGTGTTC CATAGAGCTT AGAAATCACG GACGATATAT CATCCCCACC
ATCCATCACC TTCATCATCA ACTCAAAAAA AAAAAGCCGA GATCTTGTAT CCCTCGCACT
TCGATGAATC GAAACGATCC AGAATTATAC GATATTAGAA GGAGACAAGT TTAGAGCATT
TCCCCACCCA CCGCCACCCC TTGTGCCTTG GGATATCCAT TTTCATTCAT GTATCAACAA
TACTTTTCCC GCCCCCCCCC GGCATTTCTT TTGAGGGTTC ATACCCCCTC TAGAATGCTC
TTTTTTCATT CATTCATTTC GATATCAGTT TGATGACCCT TTTTTTCTTT ATTTTCGCCT
TATGTGGATA GACCATTCTC TCTAGCATCA TAGATATATG TTTAATCGAA CGGCAGCGAA
CCTCTTATAT ATGGGGAGTA TTTTATTCAT AGTAACTCTA CCTTTATCAT TTGTGTGTAA
CGACTAGTAA GACAAACTTC CAATCGGGTA TACGGAGGAG AGAAACGAGA CAGTAGCCAA
AAAGCATAAG GGAATGGAAA GGAACTTTGG GAGTTTATCT TGGTGTCGTC AAGGGTGGAG
AGACGTGGAG GGTTGCTTCG TAGATATGCA TA
|
|---|
| Protein sequence | MAATDVNGLA SQMNSVNLNG ASQKPQKPAY VPPHLRNRAA PPAAVPPAAP AAYRPSPTGL
PTPATTPPTR HIVPAAVAED DVGGWGAQPR VRKTFEHGAP PGFGSWKNGQ HVVGARNTRM
EKEMYGEVGD GLHQATGINF DKYADIPVEV SGKGVPEPVT EFTNPPINPV LLENVKYARY
ATPTPVQKYS IPIVADGRDL MACAQTGSGK TGGFLFPILS ALFTYGPSTP PVEQDTGYGY
RRTKKVYPTA LVLAPTRELV SQIHEEARKF AYRSWVRPAV VYGGADIGSQ MRALDRGCDL
LSATPGRLVD LIERGKISLA NVKYLVLDEA DRMLDMGFEP QIRRIVDEED MPGVLERQTL
MFSATFPREI QNLARSFLKE YIFLTVGRVG STSENITQRV EYVDDQDKRS LLLDLLLAEQ
SGGLILVFVE TKRMADTLCD FLCSRRHNAT SIHGDRTQRE REAALYAFKS GRAPILVATA
VAARGLDIPN VTHVILYDLP NDVAEYTHRI GRTGRAGNVG TSTAFFNRGN TNIGKDLIEL
LKEANQEVPQ WLVEISSERS YGGGGGGGYK GSRGRSTGGG GGARLGGRDM RQGGGGYGGG
GRTSGYGGGY GGGGGGAGWG SGGGFPPAGG DSGASWW
|
|---|
| |