Gene CNA06440 details

Gene Information

• Locus tag: CNA06440
• ID: 3253959
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006670
• Strand: -
• Start bp: 1748745
• End bp: 1753761
• Gene Length: 5017 bp
• Protein Length: 1513 aa
• GC content: 53%
• IMG OID: 638252965
• Product: nucleoporin nsp1, putative
• Protein accession: XP_566987
• Protein GI: 58259149

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGTCCCCACC ATTCCTCTCC ACACCCCGGT TCCCAGCCCT AACGACAGTG GCCTCCATGT 
CCGACCTCCA CCGCGCCCTC TCGGGCGCAC ATCGGCCCAA CTCGAATCCC AGAATACATA 
GGCATAGCAG TCCCTACAAG AGACCATTAG GCCAAAGCGC TCTGCACCCC TCTTCCACCA 
TGGGTGACCT TGCCAGCCTT GCCGGGCGCG AAACTTCTCC TACGAAGAAA CCCGTCCCTA 
CTTCCAGAGT CCAGAGTCTC GCGTCCGGTG GGAGCCTTAC CAGATCAGGT AGCGAACCGT 
CACTGTTGTC TGGAATAAAG TCTATTTTCA CAAGACCTCT TCAGTGGCTC TCCACACCTG 
GAAAGACAGC AGGAGTATCT AAGCGTGACA GCTTGTCATC CTTTGGTAAC GAACTGGAGG 
ATCCTGAGTC TCCGTCCGAT AGACGAGAAG GCAAGAGGAT ACGAAGGCAC TCACCAGAGC 
CTCGGACGAA CCGGTTTAAC GACCTCGCCA GTGACTACGC ACCAGAGCAT CAGTTTGAAG 
TCCAAGGGCG CGCCGTGTCT GGCTTTATGC TTCCTCCCCT CTCTCCCCAT GTCACCCTCA 
AACCCAAGTC CTCTTTTTCT AATGACAAGA CCGCACACAG AAAGCCTGCC AATTTCTCTA 
GGCCCCTCAC CTCTTCCCAG TCCATGTCAT ATCTCGACCC CCCGTCCAAC GTGCTGCGAT 
CTTCAGCGTA CGGGCAGGCT GTTGCTTCAC CAAAAAAGAC TGGCACATTG ACTCGTTCCA 
AGAGGGTTGA CTTAGCTACA CTTGCAGATG ATGATGCTGG TTTCCAGGAA GATAGTTTAG 
GCAAGGATGA CAGAGGGAAG GAAAAAGAGA TCTGGAGTCC GTGGAAGTCT AAATATGCCG 
GTGCTAATGG AGCTTCATCG ACTGCCGCCG CACAAAAGAA CATTACTCCT GGCCGCAAAA 
CGTTCGCGCA GACATTAGAA GACGGTGATG TAAGATATTC TTTTAGATGA TGAGTCACCA 
TGCTGACACT CCTCAGCATG CTCATCCAAT GGCTTCACCC TTCCGAGGAC TGCCCACTGC 
CTCTCCTCGA CCGCGTCAAC CCAGCACCAT TGGTCTCGGT CGCTCAGCAA CTGCCGCTAA 
CCTGCGGCGT CATGCCAGCG TTGTCTCTGA TCTCAGCATG GCCTCCGCAG GTGACACTGT 
AAGAAGCACC AGCATAAGGA ACCTACGGGA CCTTGAAATT CATTCGCCGC CAGGAGGAAG 
TATAAGTCGT GACAAAGACG ATGATAGGAT GAGTGTTGAA GGAGATAGCA TCAGGCGAAA 
AGAAGGAAGT GTCCTGGTAA GTAACTGAAC CCCACCTGCT CTTCCTTCCC ATTCTATAAT 
CCATGAACTG ACGACTATCA GGATTGGTTC ATGCACGACC AATGGGAAAA ACCCAAATCA 
CCTGCATCTG TGGCTGCCTC CAACAGGTTA GGCACATCAA TGCCTAGAGC TGCCCCGACT 
CCCATGAGAA GGGGCCAGAT GGTTTGGAAT CAGGATGATA AGGTCTTTAT GAGGGAGAGT 
GAACTCAAAG CTTGTGAGTA GTTTACGGGT GTTCTTTGCG TTCCGCAGAA CTTACCTTTT 
TTCCAGCGCA AAGGCCAGCA CCTGTTCACA AAAACGAAGC CGAACGCATT CTTTACACTT 
TGGAAGCCAT GCGTAAAACT CCTCTCACTG ATGCTCGAAA AGGCGACATT CCACCTCTTC 
TCGGCCAATC CTCCCGTACT CTCCGACGAA GCATTAACGT CCCGCTTGCG ACTGCTGCTG 
GTGGTGAAAG TGCCAAACAA AGGAAAGACA AAGAAAGATT TGGTGACTTG GGAGTATCAG 
TCATGATCAG CCCGTATGGT CGGAGAAGGG TAGCTGACAG AGAGGCAAGG GAGGTCAGGA 
AACATAGTCG GATGGAGAGT CAAGGTTAGT TTGCAATGTG CGGCGGCCCA CCTTTGCTGA 
CTATTTACAG AGTATCGACC ATCCCCAACT CCATCGGATG CAAGAAGTGA GACTGCTAGC 
CAGATTTCCG GCGCCCAAAT TGAATATTTG GCGCCTAAGG AATCCTCTCC TTCTCCTTCC 
GCTCCCACTC CCCGCCGATC ATCTCGACTC AATAGAACCA ATGCCGTCGA GGAGACCACC 
CCCAAAGCCA ATAGAAGATC TACCAGAAGA GGCGCTCCAA AACAGCCAGC GCCCGTGCAT 
GAAGAAGAAC CAGTCACGAG GTCATCTAGG TCGACTCGGC GTACCAAGAA AACTGTCGTT 
GAGCGCTCAA CCTCACCTAC TCCCCCTCCG GCTCCGCCTT CAGTACCATC AATCATTGCT 
ACAGCACCTT CTCCGGGTAA GCCCTCTACT TCTGACACAT ATCAGCCTCG AGCGGTCGAT 
CAAATGCCCC GTGGAGGTTC TTCTTTACGC GCCAGGTCCG ATACGTCAAA ACGAACACAC 
CAAAGCGCAG CATCTTACTC TCGATCCCAG ACTCCTCCTA CTTCTGGACG ATATTCTGCC 
AAGGACGAGG ATTTGCCGGA TATGGAAGAG CTAGAAAAAG CTTCCAAGAT TGCATTACCC 
TCTTTCTCCG GCATCTCTTT CGCAGGCTTG AAGCCTTCTG GTGATGAAAA CGCTTCCAAC 
AATACGATGC CCTCAAAGTC TGTGACAACA CCAGCTGCAC CCCTCCCTCC ACTAAGTCTG 
CCGCGTGCTG GTGGGCCTTT GGCCCGACTG GGCGTTGCGT CTACCCGCCC TAGAGCTTCA 
TCTCCTCTCG CTGCTGGTTC TATCGTGGCT GCGCCTGACT CTCCCCCTAC AATGCCTGTG 
CCCAATAAAA ATGACTCGTC TCCACTGGCT AACGGTATTT TCCCCATCTC TGGAGGTACC 
ACAGAGAAAT CTGCTTCGCT CAACCCTACC GGCTCTACCA CACCAGCAGG TAAACCGCCC 
GCCGCTTCTT CCTTCTTCTC CAAAGCTCCT ACTTCCACTG AAGCCGCAAA AAAGCCATCT 
TTCTCTTTCG GCGACTCTTC TAGCAAAGTG TCTGGTGAAA CGATATCTGG TGCTGGAAAA 
GCTGAAGCCG GTAGCATCCC TAACTTTTTT GGGAGTGCCA CCGTGTCGTC CGCTTCTTCA 
ACTAAACAGT CGTCGCCTGT CCCTGTGCCT GCACTTGATT TTGGTGTTCA GAAAAAGGAC 
AGTGGTGAAA AAGCGCCACC AGCAGCCTTG CCCCCACCCA TCGCGTCTGC TAGTGCTTCG 
CCAGCGCCCG TCTTCTCTTT TGGAGCTTCG GTAAACGGGA ACAAGGAGGG GGATAAGGAG 
AAAACTACTG ACTCTGCTGC TTCACCGTTC TCCTTCGGCG GAAAGGAACC AGAAGTTGCA 
AAGAAGGATT CTGCAGCTCC CAGTGGCGGA TTCAGTTTTG GCGTTAAAAA GGATTCAACA 
TCTGGTGGTG AATTTAGCTT TGGGAAGTCG AAGGACAGCC CTGCCGCAGC ATCTAATGCT 
GTTCCCTCTT TTTCAGTGAG TGAAGTCAAC ATGGGGACAG ATTCACGAAC TAATAAGGTG 
TTGCAGTTTT CTGTGTCCAA ACCAGCGGCA TCGGACACTG TTACCAAGTC TCCGTTCTCC 
TTCGGTGCGC CCGCCTCTGA TAAGCCCAAG TCTGATGAAC CATCCAAACC TGCTTTCACG 
TTTGGGCAAT CCAACTCAAG CTCTGCCGCC CCGGATTCTG TCAACTCGTC CCATACCCCC 
TCAAAACCCG CATTCAGTTT CGGTGCGCCC GCTCCTTCCA GCAACACTCC CGCCTCAAAG 
CCTGCCTTTA CATTTGGTGC GAGCAGCTCC ACCACCCCTG TAACAACCCC CACCACAGCT 
GTAGCCAATA AAGATGCAAC TGGGGGTGGG ATCACTGCTC CCAGCACTAC GCCAGCCTTT 
GGAGGCTTCT CATTCGGTAG CCAAGCTGTG AACAAAGCCG AAGATAAAAA GGACGCACCT 
GCGAACCCGT TTGGGGGAAC TTCAAATAAT AATTCAACGT TCACGCTTGG TGGCCCTGCT 
AACAAGTCCA TTGCTGCGAA CGGGACGAGC TCTCCTTTCG GGACTGCTCC AAGCACCGTT 
GCGAATGCAG ACTCTGCCAA GAATCCTTTC GATAATAAAA GTGGGCCCAA TGGGGTCACG 
GCACCAGCTT TCACCTTTGG TGCTCCCGGT AACGCGTCAA TGAAGCCTGC TAATGCAGGC 
GCGTTTGGAT CAAATGTATC GACCGGTAGC CAACCGTTTG TCTTCGGTGC GAGCTCTGTC 
AATGGTGGCT CTACTTCTGC GCCCTTGAAT ACGTTCAAAA CCGATAACGT CGCTAAGCCG 
AGCACTCCCG CTTTCGCCTT CGGGTCGGGT AGTAATGCTA CTCCGGCGTC CAACCCATTC 
AACGCTTCTA CTGCCCCAGC ATCTAATCCT TTTGGTCAGC AGCAAGACCA GAAACCAAAT 
GCGCCGGCTA GCTTTGCTTT CGGTGCGACC AACAACTCCG TCGCTGCGCC AGCATCCAAT 
TCTTCATTTT CCTTTGGACA ACCTATGAAT GCCAGCCCTG CTGCATCCAC TTCCACGTTC 
TCCTTCGGCC AGCCTGCTCA ACAGCAATCC TCAACTCCTG CTGCTCCTTC GTTCTCTTTC 
GGACAGACTG CTGCCCAACC ACAACCAGCG GCGGCGTTCA GTTTTGGCGC GCCTGCCGGT 
GATGCTTCTA GGTTCAAAAG TCCCACGCCC GGGCCAGAAG GGGGATTCAG TTTGGGTGTG 
GCAACAAACG AGGCTGCGCC AGCGAGCCCT GGTGGAAGGA GGGTTAAAGG TTTGCCACGA 
AGGCGATGAT AAGTACTCTG GTAATTGGTT GTATTTCTAT TGTAGCAGCA CGTTCGGGTC 
AGGTGTATAA GGAAGGCTGG AACGTTAGTT TTCCCATAGC ATATAAATTT TTCATTACAT 
TTTCTTCATA AGTAGGGTAT CTTTCCTAAT ATTTTTCCTC ATATATTCGA CGCAAAAACG 
CAATTGCATA CTGTTACAGC AAGGTTTCAT TCGGTTT 

 

Protein sequence

MSDLHRALSG AHRPNSNPRI HRHSSPYKRP LGQSALHPSS TMGDLASLAG RETSPTKKPV 
PTSRVQSLAS GGSLTRSGSE PSLLSGIKSI FTRPLQWLST PGKTAGVSKR DSLSSFGNEL 
EDPESPSDRR EGKRIRRHSP EPRTNRFNDL ASDYAPEHQF EVQGRAVSGF MLPPLSPHVT 
LKPKSSFSND KTAHRKPANF SRPLTSSQSM SYLDPPSNVL RSSAYGQAVA SPKKTGTLTR 
SKRVDLATLA DDDAGFQEDS LGKDDRGKEK EIWSPWKSKY AGANGASSTA AAQKNITPGR 
KTFAQTLEDG DHAHPMASPF RGLPTASPRP RQPSTIGLGR SATAANLRRH ASVVSDLSMA 
SAGDTVRSTS IRNLRDLEIH SPPGGSISRD KDDDRMSVEG DSIRRKEGSV LDWFMHDQWE 
KPKSPASVAA SNRLGTSMPR AAPTPMRRGQ MVWNQDDKVF MRESELKASQ RPAPVHKNEA 
ERILYTLEAM RKTPLTDARK GDIPPLLGQS SRTLRRSINV PLATAAGGES AKQRKDKERF 
GDLGVSVMIS PYGRRRVADR EAREVRKHSR MESQEYRPSP TPSDARSETA SQISGAQIEY 
LAPKESSPSP SAPTPRRSSR LNRTNAVEET TPKANRRSTR RGAPKQPAPV HEEEPVTRSS 
RSTRRTKKTV VERSTSPTPP PAPPSVPSII ATAPSPGKPS TSDTYQPRAV DQMPRGGSSL 
RARSDTSKRT HQSAASYSRS QTPPTSGRYS AKDEDLPDME ELEKASKIAL PSFSGISFAG 
LKPSGDENAS NNTMPSKSVT TPAAPLPPLS LPRAGGPLAR LGVASTRPRA SSPLAAGSIV 
AAPDSPPTMP VPNKNDSSPL ANGIFPISGG TTEKSASLNP TGSTTPAGKP PAASSFFSKA 
PTSTEAAKKP SFSFGDSSSK VSGETISGAG KAEAGSIPNF FGSATVSSAS STKQSSPVPV 
PALDFGVQKK DSGEKAPPAA LPPPIASASA SPAPVFSFGA SVNGNKEGDK EKTTDSAASP 
FSFGGKEPEV AKKDSAAPSG GFSFGVKKDS TSGGEFSFGK SKDSPAAASN AVPSFSVSEV 
NMGTDSRTNK VLQFSVSKPA ASDTVTKSPF SFGAPASDKP KSDEPSKPAF TFGQSNSSSA 
APDSVNSSHT PSKPAFSFGA PAPSSNTPAS KPAFTFGASS STTPVTTPTT AVANKDATGG 
GITAPSTTPA FGGFSFGSQA VNKAEDKKDA PANPFGGTSN NNSTFTLGGP ANKSIAANGT 
SSPFGTAPST VANADSAKNP FDNKSGPNGV TAPAFTFGAP GNASMKPANA GAFGSNVSTG 
SQPFVFGASS VNGGSTSAPL NTFKTDNVAK PSTPAFAFGS GSNATPASNP FNASTAPASN 
PFGQQQDQKP NAPASFAFGA TNNSVAAPAS NSSFSFGQPM NASPAASTST FSFGQPAQQQ 
SSTPAAPSFS FGQTAAQPQP AAAFSFGAPA GDASRFKSPT PGPEGGFSLG VATNEAAPAS 
PGGRRVKGLP RRR