Gene CNA04280 details

Gene Information

• Locus tag: CNA04280
• ID: 3253368
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006670
• Strand: -
• Start bp: 1151724
• End bp: 1153626
• Gene Length: 1903 bp
• Protein Length: 523 aa
• GC content: 48%
• IMG OID: 638252748
• Product: t-complex protein 1, beta subunit (tcp-1-beta), putative
• Protein accession: XP_566776
• Protein GI: 58258727
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0459] Chaperonin GroEL (HSP60 family)
• TIGRFAM ID: [TIGR02341] T-complex protein 1, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.697024
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GCGAAGACTC ACAATATACC ATTTCAGAAA AAAACATAAA TAATGAACGT ATTCGCGGAC 
GAGGTGAGTA AGGTGAAGTA GGTCAGAGGA AGTACTGATC AATGATGTTC AATCCAGGCT 
ACTGAAGAAA GGGGCGAAAA CGCTCGTCTC TCATCCTTCG TTGGTGCCAT GGCCTTGGGT 
GACTTGGTCA AATCAACTTT GGGACCTAAA GGCATGAACA AAATCTTACG TGGGTGCGCA 
AGTTATAGCA GGTGTATATA ATCTGACTGT TTGCCAGAAT CCGCTTCTAA CAGTACCATC 
ACCGTCACCA ACGATGGTGC CACAATTCTC AAATCGATCC ATCTTGACAA TCCCGCCGCC 
AAAATCCTTG TCAACATTTC CAAAGTTCAA GATGATGAAG TCGGCGACGG CACCACCTCT 
GTCTGTGTAC TTGCTTCTGA ACTCTTGCGT GAAGCGGAAA AGCTGGTCAC TGTTCAAAAA 
ATTCACCCTC AAACAGTTGC CGAAGGCTAC CGAATTGCCA GTAGGGCGGC CCTCCAAGCG 
CTCGAGGCGT CTGCTGTAGA CAACAAGAAC GACAACGCCA AGTTCAGGGA GGATCTGTTC 
AACATTGCTA GAACAACTTT GAGTAGTAAG GTACTGGCAC AGGACAAAGA TTACTTTGCA 
AATCTCGCCG TGGATGCTGT GTTGAGGTTG AAGGGATCTA CAGATTTGGA GCATATCCAA 
ATTATCAAGA AAGTCGGAGG GAAGTTGACA GACTCTTATT TGGATGAGGG ATTCATCCTA 
GACAAGACTA TCGCTACCAA TTCTCCTAAG CGAATAGAAA ATGCCAAGAT TTTGATCGCC 
AACACCTGTA TGTTCTTGTC ATCAACTTGT TGAGATTTTG CTGATACAGT ATAGCTATGG 
ACACTGATAA GATCAAAATT TTTGGTGCGA GAGTGCGAGT AGACGGTACT GGGAAGCTTG 
CCGAGCTCGA GCGTGCCGAA AAGGTAAACC ATTGTTTCTT GATTCTAGAT CCAAGGCACT 
ATGTACTGAC TTTTTTGCAG GAGAAGATGA AAGCCAAGGT CCAGGCCATT GCATCCCATG 
GTATCACCTG TTTCGTTAAT CGACAGCTTA TCTACAACTA CCCTGAATCT CTTCTTGCTG 
AGGCCGGTAT CATGTCCATT GAGCACGCGG ACTTTGAAGG TGTCGAGAGA TTGGCCCTTG 
TCACTGGAGG TGACATTGCC TCCACTTTTG ATGCCCCCGA AAAGGTCAAA ATTGGTCGAT 
GTGACGTTAT CGAGGAGATT ATGATTGGTG AGGACAAACT CATCAAATTC TCTGGTGTTG 
CCGCCGGTGA GGCCTGTACT GTCGTCCTTC GTGGCGCCAC CTCGCAAATG GTCGAGGAAG 
CCGAGCGATC TTTGCATGAT GCCCTTTCTG TCCTTTCTCA AACTGTCAAG GAGACTCGTG 
TCACCCTTGG TGGTGGTTGT GCTGAGATGC TCATGTCTTG CCAGGTTGAA GAGGCTGCTC 
GGACTGTCAA GGGTAAGAAA GCCCTTGCAG TCGAAGGGTT CGCCAGGGCT CTCAGGCAGA 
TGCCTACCAT TATTGCCGAC AACGGTGGTT ATGACTCAAG TGATTTGGTG ACCAAGTTAA 
GAGCCGCGCA CTATGAGGGA CAGTCTGATG CTGGCTTGGA TATGGACAAG GGCGAAATTG 
GGTCTATGAG ACAATTGGGA ATCACAGAAT CTTTCAAGTT GAAGAAGCAG GTTGTAGTCA 
GTGCGAGCGA GGCAGCGGAG ATGATTTTGC GGTACGGAAT ACTACTATGA CACCTGTTGT 
AGAAAGATTG CTGATCACCG TTATAGTGTG GATAACATCC TGCGCAGTGC CCCAAGACGG 
CGAGAGGCTC ACTAGAGTGG ATAGGAAATT GTGCACAATA GGC 

 

Protein sequence

MNVFADEATE ERGENARLSS FVGAMALGDL VKSTLGPKGM NKILQSASNS TITVTNDGAT 
ILKSIHLDNP AAKILVNISK VQDDEVGDGT TSVCVLASEL LREAEKLVTV QKIHPQTVAE 
GYRIASRAAL QALEASAVDN KNDNAKFRED LFNIARTTLS SKVLAQDKDY FANLAVDAVL 
RLKGSTDLEH IQIIKKVGGK LTDSYLDEGF ILDKTIATNS PKRIENAKIL IANTSMDTDK 
IKIFGARVRV DGTGKLAELE RAEKEKMKAK VQAIASHGIT CFVNRQLIYN YPESLLAEAG 
IMSIEHADFE GVERLALVTG GDIASTFDAP EKVKIGRCDV IEEIMIGEDK LIKFSGVAAG 
EACTVVLRGA TSQMVEEAER SLHDALSVLS QTVKETRVTL GGGCAEMLMS CQVEEAARTV 
KGKKALAVEG FARALRQMPT IIADNGGYDS SDLVTKLRAA HYEGQSDAGL DMDKGEIGSM 
RQLGITESFK LKKQVVVSAS EAAEMILRVD NILRSAPRRR EAH