Gene CNA02400 details

Gene Information

• Locus tag: CNA02400
• ID: 3253633
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006670
• Strand: +
• Start bp: 628241
• End bp: 630385
• Gene Length: 2145 bp
• Protein Length: 442 aa
• GC content: 53%
• IMG OID: 638252572
• Product: conserved hypothetical protein
• Protein accession: XP_567252
• Protein GI: 58259679
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.00957306
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTCAATCCA TCCTCCGTCC ATCTTTCCTT TTCATCCATC CTCCCCATCC TCCACCCGGA 
CAATCCCGAC TGTCCCGTCC ACCCCGCCGA CAAAGGAGCC TTTGCGATCC CTGTCCCTCT 
GCCGGTCTGT GCGTCGCATA CTTGGCCCTG ATCTCAAGCG TGAGTATACT CTTCTCTCTT 
CTTGTTTAGC AGTCCTGCCC ATGGCTGCCC CGTCCCGTCT CATTCCAACC CTCCGCCCAC 
ATCTACTCAC AGGCTACATA GTGATTTACA CTCTTTCCCT CCACGCTCTT TCATTACTCC 
TCTGCGATCC ACCTCGACTT CCTTCCAAGC CCATCCACAG CCATGCTTGC CACCAATCTC 
ATCTCTCTCG TCCTTGTTCT CCCCACTCTT GCTCTTGCTG GACACAACTC TCCCTTCAAC 
GGCCACTCGC CCTCTCGTAG ACATCACCAC GCTCGCGCCG CATCTTTTGC ACTCACGCAT 
GCCTCTCCCA CGTCCAACGA GCTTCTCAAG CGTACTTACC ACGATGCCAT CGAGCACAAG 
ATGGCGAGGA AGCGGGCCGG CAAAAAGTTC GCTAAGCGAG GTGCGGACGG GTCCCAATGT 
CGAGTAAAGG GGCAGAGCTA TGTCCCCACT GGTGTGAGCA GCACTTCTGC CATCTCGAGT 
ACTGCTGCAT CTTCCATCGC TAGTTCCCCC TCGCCAGCCA GCACGGATGC TATCGCCAGT 
ACTTCCGCCT CGGCTGTGGC CCCTGATTCC AGCGCTAGCG CTAGCACCAG CACAAGTGAT 
GAAAGCGCTC CTACCTCCAG TGCATGGATT GACAACCAAC AAAACTGGGT TGACGCCACG 
TCCTCGTCTG AACAAGCGGC TGCAACTTCG GCATCTTCGT CCTCCCCTTC TTCTAGCTCA 
GGAACGAGCG TCGTCAGTTA TGCCGGCTTG ACTCCCAACG GTAACAAGGC AGGTGTAAGT 
GCTGGTGATT CCCTGCCCTG GGTTGCGTCA AAGTTGGGTT GGTGGTATGG TGCGTGTAAC 
TCTCGCAGTA TTGGTGAAAT GACTTGGAGG CTGACGCTGG CTAACAGACT GGTCTGCCAC 
TCCTTCTGGT GACTGCGGCA GTGCTGTGAC GGTACCAATG CTCTGGGGTG GTGGTATCGC 
TGATGCCACC GACGCCTCTC GTCTTGTCGC ATTCGAGGCC CTCAGCCAGA GTCCTTCGTA 
TATCATTGGA TTTGAGGAGC CCGATTGTGC TGCCGGGTCA GGCAGTTCTG GTCTCGACGT 
TGCCACTGGT GAGTTTCGTT TCATCCGAAA AACAAATTCA CGAGTCTAAC GGTAGCAGGT 
ATTGCGCTTT GGGACTCATT GATTGCGCCC AAGGGCGAGG CCGGCACTAT TCTTGTCGGT 
CCCTCCATGT GCAAGCAAGC TGCCGAATCC GGCTGGCTTG GACCTTTCAT GGAAGGCGTA 
TCTAGGAAGC CGGATATCAT GAACATCCAT GTGAATAAGA ACAGCGCCGC TGGGATCCAG 
CTTGACATTG TGAGTGATTT GCGGATGTGA GATGCGCATT TTATCTGAAC TCGTATTTAG 
GATCATTACT GGAACACTTA CGGTCTCCCT ATCTGGGTGA CAGAGTTTGC GTGTGTAGAC 
GATTCCACCG ACTTTGTCCC TTGTACCGAT CAGGATGAGA TCAACTCATT CATCAATACT 
GCCGTCGACA TTTTTGAGAC CGATTCCCGT ATTGCCGGTT ACGCTTACTC GTAAGTTTCC 
CTATGGGTGG GAACAAAAGG TATGTCAAGG CTGACAGGCT GGTAGAAATG GGTATGGCCT 
CTCTGAGAAT TGGATGATGG TCAAGGATGG CCAGTTATCG TATGTTGCTT CATCTGAATC 
CATCATAAGC TTGAGGCTAA CGGCGACCAC AGCGAGTCCG GCCAGACTTA CCTTGCCGCT 
ATTTCCAAAT ACCACTGATC TGGCACTTAT CTATAGTTGT TCGTTCTTCC AATATGCTCG 
GACGTATTTA TAAATTTATG ATTGAAATTG AAGAAGCCCT CTGGATACCC AAAAACTTGA 
TACCTTTTAT ATACCCTGCC ATCTTTCCGT GTGTCACTTT TCCCTTGCTT GCTAGGTGTA 
CACGGACTAT CTCGTCGATA TCTGGAAATA TATTCTGTTA CGGAT 

 

Protein sequence

MLATNLISLV LVLPTLALAG HNSPFNGHSP SRRHHHARAA SFALTHASPT SNELLKRTYH 
DAIEHKMARK RAGKKFAKRG ADGSQCRVKG QSYVPTGVSS TSAISSTAAS SIASSPSPAS 
TDAIASTSAS AVAPDSSASA STSTSDESAP TSSAWIDNQQ NWVDATSSSE QAAATSASSS 
SPSSSSGTSV VSYAGLTPNG NKAGVSAGDS LPWVASKLGW WYDWSATPSG DCGSAVTVPM 
LWGGGIADAT DASRLVAFEA LSQSPSYIIG FEEPDCAAGS GSSGLDVATG IALWDSLIAP 
KGEAGTILVG PSMCKQAAES GWLGPFMEGV SRKPDIMNIH VNKNSAAGIQ LDIDHYWNTY 
GLPIWVTEFA CVDDSTDFVP CTDQDEINSF INTAVDIFET DSRIAGYAYS NGYGLSENWM 
MVKDGQLSES GQTYLAAISK YH