Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | lpl2283 |
Symbol | rpoD |
ID | 3115465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Legionella pneumophila str. Lens |
Kingdom | Bacteria |
Replicon accession | NC_006369 |
Strand | + |
Start bp | 2601678 |
End bp | 2603543 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637584060 |
Product | RNA polymerase sigma factor rpoD (sigma-70) |
Protein accession | YP_127618 |
Protein GI | 54295203 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCATGA ATGACCAAGA TCAGCAAAGC TCACAAATTA CGAAAGTCAT TAGCCTGGGT AAAGAACAAG GTTATTTGAC TTACAGTCAA ATTAATGACT TATTACCTAA CATTGTGGAT ACAGAGCATT TTGATGTAAT CATTAGCATG CTGGAAGGCA TGAACATCAA AGTTTTTGAG CTTCCACCCA GTGAAGATGA ACTTGCGCTC TTATTAAATA CTGAGGAAGT CCCAGATATT GAAGAAGCAG CCATGGTACT CGCCTCTGTG GATAAAGAAA CAGGTAGAAC AACTGACCCG GTTCGTATGT ATATGCGCGA AATGGGCACA GTAGAACTGC TGACTCGTGA AGGTGAAATC CGCATTGCCA AACGCATTGA AGAAGGAATT TACCAGGTTC TAAAATCCCT GGCGCATTAT CCGGAAACAG TGCAACTGGT TCTTGAAGAC TATGATCGTT TCCTTGCCGA AGAAATTCGC CTTAATGAAA TCATTAGTGG TTTTGCGGAT GTTGATGAAG AAATAGCACC TGCCACTAAC ATTGGCTCCA TGCTGGATGA AGAGCAACAG GAAGAAATAC TTCTTGATGT GGATGAGGAA GATGAAGACG GCGAAGGTGG CATATCTGAT GTGGATGATG GACCCAATCC TGAGCAAGCG AAGATTTACT TTGATGAACT GCGTGAAGCC TTTGAAAAGG CAATGAAAGC CCTCAAAGAA CATGGCCGTA CGAATAAAAA AACGGTCGAG TTGCTTGATT CCATGTCAGA ATCTTTTCTA AAACTCAAAT TGACTTCCAG GCAAGTTGAT AAATTAACTC GTCATTTTCG CCAATTGCGA AATCATATCC GTGAATTTGA GAGAAGCATT ATGCGTCTTT GCATCGAAAA AGCACGCATC CCCAGAAAAT TGTTTATAGA TACCTTCCCA GGTCAGGAAA CAGATCTAGG CTGGTTAGAA ACCATTATCA GCAAACATGC CAAAAAACTC GATCTTCAGC GTATAGAAGA AAATCGGGAA GAAATACTGC GCTTACAATC CAAATTGGCC TCTTTTGAAA TCGAATATGG TTTAACCATT AGTGAAATCA AAGACATTAA CCGCAAGATG TCTATTGGCG AAGCCAAAGC AAGACGCGCT AAAAAAGAAA TGGTCGAGGC TAACTTGCGT CTCGTGATTT CTATCGCCAA AAAATACACC AACCGCGGTT TGCAGTTTCT TGATTTGATC CAGGAAGGCA ACATTGGCTT GATGAAAGCA GTCGATAAAT TCGAATACCG TCGTGGCTAT AAGTTTTCTA CCTATGCGAC TTGGTGGATT AGACAAGCGA TTACACGCTC CATAGCCGAT CAGGCGCGGA CTATTCGTAT TCCGGTTCAT ATGATTGAAA CAATCAATAA GCTCAATCGT ATTTCTCGCC AAATTTTGCA AGAAACTGGC AGGGAAGCGA CACCGGAAGA ATTGGCCGAA AAAATGGAGC TAAGTGAAGA TAAAATTCGC AAAGTTCTAA AGATAGCCAA AGAGCCTATT TCCATGGAAA CTCCTGTCGG TGATGATGAC GACTCTCATC TGGGTGATTT TATTGAAGAC AACAACATTG AATCGCCAAT CGATATGGCT ACAGCGGAAG GTTTAAGAGA AGCCACTTTA GAAATACTGG AAACCTTGAC CCCACGAGAA GCCAAGGTTC TGCGTATGCG TTTTGGTATC GAAATGAATA CAGACCATAC CCTGGAAGAA GTTGGTAAAC AATTTGACGT AACCCGCGAG CGTATTCGCC AAATCGAAGC AAAAGCACTA CGCAAATTGC GCCACCCTTC ACGTTCAGAA AAGCTAAGAA GCTTCCTTGA AGGAGACGAA GGTTAA
|
Protein sequence | MTMNDQDQQS SQITKVISLG KEQGYLTYSQ INDLLPNIVD TEHFDVIISM LEGMNIKVFE LPPSEDELAL LLNTEEVPDI EEAAMVLASV DKETGRTTDP VRMYMREMGT VELLTREGEI RIAKRIEEGI YQVLKSLAHY PETVQLVLED YDRFLAEEIR LNEIISGFAD VDEEIAPATN IGSMLDEEQQ EEILLDVDEE DEDGEGGISD VDDGPNPEQA KIYFDELREA FEKAMKALKE HGRTNKKTVE LLDSMSESFL KLKLTSRQVD KLTRHFRQLR NHIREFERSI MRLCIEKARI PRKLFIDTFP GQETDLGWLE TIISKHAKKL DLQRIEENRE EILRLQSKLA SFEIEYGLTI SEIKDINRKM SIGEAKARRA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR ISRQILQETG REATPEELAE KMELSEDKIR KVLKIAKEPI SMETPVGDDD DSHLGDFIED NNIESPIDMA TAEGLREATL EILETLTPRE AKVLRMRFGI EMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPSRSE KLRSFLEGDE G
|
| |