Gene lpl2283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus taglpl2283 
SymbolrpoD 
ID3115465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLegionella pneumophila str. Lens 
KingdomBacteria 
Replicon accessionNC_006369 
Strand
Start bp2601678 
End bp2603543 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content42% 
IMG OID637584060 
ProductRNA polymerase sigma factor rpoD (sigma-70) 
Protein accessionYP_127618 
Protein GI54295203 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATGA ATGACCAAGA TCAGCAAAGC TCACAAATTA CGAAAGTCAT TAGCCTGGGT 
AAAGAACAAG GTTATTTGAC TTACAGTCAA ATTAATGACT TATTACCTAA CATTGTGGAT
ACAGAGCATT TTGATGTAAT CATTAGCATG CTGGAAGGCA TGAACATCAA AGTTTTTGAG
CTTCCACCCA GTGAAGATGA ACTTGCGCTC TTATTAAATA CTGAGGAAGT CCCAGATATT
GAAGAAGCAG CCATGGTACT CGCCTCTGTG GATAAAGAAA CAGGTAGAAC AACTGACCCG
GTTCGTATGT ATATGCGCGA AATGGGCACA GTAGAACTGC TGACTCGTGA AGGTGAAATC
CGCATTGCCA AACGCATTGA AGAAGGAATT TACCAGGTTC TAAAATCCCT GGCGCATTAT
CCGGAAACAG TGCAACTGGT TCTTGAAGAC TATGATCGTT TCCTTGCCGA AGAAATTCGC
CTTAATGAAA TCATTAGTGG TTTTGCGGAT GTTGATGAAG AAATAGCACC TGCCACTAAC
ATTGGCTCCA TGCTGGATGA AGAGCAACAG GAAGAAATAC TTCTTGATGT GGATGAGGAA
GATGAAGACG GCGAAGGTGG CATATCTGAT GTGGATGATG GACCCAATCC TGAGCAAGCG
AAGATTTACT TTGATGAACT GCGTGAAGCC TTTGAAAAGG CAATGAAAGC CCTCAAAGAA
CATGGCCGTA CGAATAAAAA AACGGTCGAG TTGCTTGATT CCATGTCAGA ATCTTTTCTA
AAACTCAAAT TGACTTCCAG GCAAGTTGAT AAATTAACTC GTCATTTTCG CCAATTGCGA
AATCATATCC GTGAATTTGA GAGAAGCATT ATGCGTCTTT GCATCGAAAA AGCACGCATC
CCCAGAAAAT TGTTTATAGA TACCTTCCCA GGTCAGGAAA CAGATCTAGG CTGGTTAGAA
ACCATTATCA GCAAACATGC CAAAAAACTC GATCTTCAGC GTATAGAAGA AAATCGGGAA
GAAATACTGC GCTTACAATC CAAATTGGCC TCTTTTGAAA TCGAATATGG TTTAACCATT
AGTGAAATCA AAGACATTAA CCGCAAGATG TCTATTGGCG AAGCCAAAGC AAGACGCGCT
AAAAAAGAAA TGGTCGAGGC TAACTTGCGT CTCGTGATTT CTATCGCCAA AAAATACACC
AACCGCGGTT TGCAGTTTCT TGATTTGATC CAGGAAGGCA ACATTGGCTT GATGAAAGCA
GTCGATAAAT TCGAATACCG TCGTGGCTAT AAGTTTTCTA CCTATGCGAC TTGGTGGATT
AGACAAGCGA TTACACGCTC CATAGCCGAT CAGGCGCGGA CTATTCGTAT TCCGGTTCAT
ATGATTGAAA CAATCAATAA GCTCAATCGT ATTTCTCGCC AAATTTTGCA AGAAACTGGC
AGGGAAGCGA CACCGGAAGA ATTGGCCGAA AAAATGGAGC TAAGTGAAGA TAAAATTCGC
AAAGTTCTAA AGATAGCCAA AGAGCCTATT TCCATGGAAA CTCCTGTCGG TGATGATGAC
GACTCTCATC TGGGTGATTT TATTGAAGAC AACAACATTG AATCGCCAAT CGATATGGCT
ACAGCGGAAG GTTTAAGAGA AGCCACTTTA GAAATACTGG AAACCTTGAC CCCACGAGAA
GCCAAGGTTC TGCGTATGCG TTTTGGTATC GAAATGAATA CAGACCATAC CCTGGAAGAA
GTTGGTAAAC AATTTGACGT AACCCGCGAG CGTATTCGCC AAATCGAAGC AAAAGCACTA
CGCAAATTGC GCCACCCTTC ACGTTCAGAA AAGCTAAGAA GCTTCCTTGA AGGAGACGAA
GGTTAA
 
Protein sequence
MTMNDQDQQS SQITKVISLG KEQGYLTYSQ INDLLPNIVD TEHFDVIISM LEGMNIKVFE 
LPPSEDELAL LLNTEEVPDI EEAAMVLASV DKETGRTTDP VRMYMREMGT VELLTREGEI
RIAKRIEEGI YQVLKSLAHY PETVQLVLED YDRFLAEEIR LNEIISGFAD VDEEIAPATN
IGSMLDEEQQ EEILLDVDEE DEDGEGGISD VDDGPNPEQA KIYFDELREA FEKAMKALKE
HGRTNKKTVE LLDSMSESFL KLKLTSRQVD KLTRHFRQLR NHIREFERSI MRLCIEKARI
PRKLFIDTFP GQETDLGWLE TIISKHAKKL DLQRIEENRE EILRLQSKLA SFEIEYGLTI
SEIKDINRKM SIGEAKARRA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA
VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR ISRQILQETG
REATPEELAE KMELSEDKIR KVLKIAKEPI SMETPVGDDD DSHLGDFIED NNIESPIDMA
TAEGLREATL EILETLTPRE AKVLRMRFGI EMNTDHTLEE VGKQFDVTRE RIRQIEAKAL
RKLRHPSRSE KLRSFLEGDE G